assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	1	13802-13936	1	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	AGTTCCGTAGGAACGACAGATACTAACAACGGGTTTCAACCCGGTGA	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|72aa|down_0|NC_020449.1_14348_14564_-	NA|419aa|up_9|NC_020449.1_3783_5040_+	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|166aa|up_8|NC_020449.1_5036_5534_+	cd06971, PgpA, Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism	NA|114aa|up_7|NC_020449.1_5542_5884_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|187aa|up_6|NC_020449.1_5880_6441_+	PRK00150, def, peptide deformylase; Reviewed	NA|315aa|up_5|NC_020449.1_6440_7385_+	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_4|NC_020449.1_7381_8134_+	pfam01976, DUF116, Protein of unknown function DUF116	NA|279aa|up_3|NC_020449.1_8146_8983_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|908aa|up_2|NC_020449.1_8979_11703_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|336aa|up_1|NC_020449.1_11709_12717_+	pfam04055, Radical_SAM, Radical SAM superfamily	NA|263aa|up_0|NC_020449.1_12883_13672_-	cd03394, PAP2_like_5, PAP2_like_5 proteins	NA|72aa|down_0|NC_020449.1_14348_14564_-	NA	NA|448aa|down_1|NC_020449.1_14875_16219_+	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|297aa|down_2|NC_020449.1_16551_17442_+	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair]	NA|279aa|down_3|NC_020449.1_17438_18275_+	cd18093, SpoU-like_TrmJ, SAM-dependent tRNA methylase related to TrmJ	NA|910aa|down_4|NC_020449.1_18296_21026_+	pfam01364, Peptidase_C25, Peptidase family C25	NA|275aa|down_5|NC_020449.1_21713_22538_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|67aa|down_6|NC_020449.1_22571_22772_+	pfam11297, DUF3098, Protein of unknown function (DUF3098)	NA|293aa|down_7|NC_020449.1_22773_23652_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|284aa|down_8|NC_020449.1_23655_24507_+	pfam05681, Fumerase, Fumarate hydratase (Fumerase)	NA|168aa|down_9|NC_020449.1_24510_25014_+	PRK06842, PRK06842, Fe-S-containing hydro-lyase
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	2	78926-79013	2	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	ATGCACCCGTTATGAATACCTATAT	25	1	1	78951-78988	NC_020449.1_424852-424815	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|120aa|up_1|NC_020449.1_77785_78145_+,NA|103aa|up_0|NC_020449.1_78147_78456_-,NA|146aa|down_0|NC_020449.1_80281_80719_+,NA|249aa|down_1|NC_020449.1_80708_81455_+,NA|666aa|down_2|NC_020449.1_82262_84260_+,NA|419aa|down_4|NC_020449.1_87405_88662_+,NA|204aa|down_5|NC_020449.1_89398_90010_+	NA|327aa|up_9|NC_020449.1_61197_62178_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|1066aa|up_8|NC_020449.1_62427_65625_-	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|456aa|up_7|NC_020449.1_66973_68341_+	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]	NA|1087aa|up_6|NC_020449.1_68356_71617_+	pfam13861, FLgD_tudor, FlgD Tudor-like domain	NA|256aa|up_5|NC_020449.1_73542_74310_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|717aa|up_4|NC_020449.1_74320_76471_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|172aa|up_3|NC_020449.1_76661_77177_+	pfam13592, HTH_33, Winged helix-turn helix	NA|187aa|up_2|NC_020449.1_77158_77719_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|120aa|up_1|NC_020449.1_77785_78145_+	NA	NA|103aa|up_0|NC_020449.1_78147_78456_-	NA	NA|146aa|down_0|NC_020449.1_80281_80719_+	NA	NA|249aa|down_1|NC_020449.1_80708_81455_+	NA	NA|666aa|down_2|NC_020449.1_82262_84260_+	NA	NA|778aa|down_3|NC_020449.1_84294_86628_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|419aa|down_4|NC_020449.1_87405_88662_+	NA	NA|204aa|down_5|NC_020449.1_89398_90010_+	NA	NA|933aa|down_6|NC_020449.1_90058_92857_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|855aa|down_7|NC_020449.1_92953_95518_-	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin	NA|57aa|down_8|NC_020449.1_95682_95853_-	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|406aa|down_9|NC_020449.1_96006_97224_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	3	226242-226799	1	CRT	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	GCTAANGGACTAANNTCACTTATCTGGTTA	30	1	3	226536-226571|226536-226571|226536-226571	NC_020449.1_222696-222731|NC_020449.1_220803-220838|NC_020449.1_221001-221036	NA	8	8	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|54aa|up_6|NC_020449.1_207095_207257_-,NA|150aa|up_0|NC_020449.1_219784_220234_-,NA|445aa|down_0|NC_020449.1_230264_231599_-,NA|219aa|down_1|NC_020449.1_232368_233025_-,NA|154aa|down_2|NC_020449.1_233059_233521_-,NA|496aa|down_3|NC_020449.1_233508_234996_-,NA|117aa|down_5|NC_020449.1_237958_238309_+,NA|117aa|down_8|NC_020449.1_239991_240342_-,NA|98aa|down_9|NC_020449.1_240356_240650_-	NA|336aa|up_9|NC_020449.1_203905_204913_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|293aa|up_8|NC_020449.1_205605_206484_-	COG4866, COG4866, Uncharacterized conserved protein [Function unknown]	NA|139aa|up_7|NC_020449.1_206487_206904_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|54aa|up_6|NC_020449.1_207095_207257_-	NA	NA|1067aa|up_5|NC_020449.1_208061_211262_-	COG4946, COG4946, Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]	NA|315aa|up_4|NC_020449.1_211458_212403_+	pfam03783, CsgG, Curli production assembly/transport component CsgG	NA|125aa|up_3|NC_020449.1_212386_212761_+	pfam16068, DUF4810, Domain of unknown function (DUF4810)	NA|229aa|up_2|NC_020449.1_212772_213459_+	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799)	NA|1851aa|up_1|NC_020449.1_214230_219783_-	smart00089, PKD, Repeats in polycystic kidney disease 1 (PKD1) and other proteins	NA|150aa|up_0|NC_020449.1_219784_220234_-	NA	NA|445aa|down_0|NC_020449.1_230264_231599_-	NA	NA|219aa|down_1|NC_020449.1_232368_233025_-	NA	NA|154aa|down_2|NC_020449.1_233059_233521_-	NA	NA|496aa|down_3|NC_020449.1_233508_234996_-	NA	NA|993aa|down_4|NC_020449.1_234995_237974_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|117aa|down_5|NC_020449.1_237958_238309_+	NA	NA|262aa|down_6|NC_020449.1_238293_239079_-	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|273aa|down_7|NC_020449.1_239075_239894_-	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|117aa|down_8|NC_020449.1_239991_240342_-	NA	NA|98aa|down_9|NC_020449.1_240356_240650_-	NA
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	4	270391-270509	3	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	GTAGGAACGACAGATACTAACAAAGGGTTTT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|150aa|up_6|NC_020449.1_260178_260628_-,NA|179aa|up_5|NC_020449.1_260644_261181_-,NA|417aa|down_9|NC_020449.1_286020_287271_-	NA|150aa|up_9|NC_020449.1_258837_259287_-	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins	NA|84aa|up_8|NC_020449.1_259279_259531_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|207aa|up_7|NC_020449.1_259586_260207_-	pfam11363, DUF3164, Protein of unknown function (DUF3164)	NA|150aa|up_6|NC_020449.1_260178_260628_-	NA	NA|179aa|up_5|NC_020449.1_260644_261181_-	NA	NA|233aa|up_4|NC_020449.1_261189_261888_-	pfam13401, AAA_22, AAA domain	NA|688aa|up_3|NC_020449.1_261898_263962_-	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|188aa|up_2|NC_020449.1_263948_264512_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|243aa|up_1|NC_020449.1_264933_265662_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|1295aa|up_0|NC_020449.1_266342_270227_+	cd07302, CHD, cyclase homology domain	NA|1312aa|down_0|NC_020449.1_270799_274735_+	TIGR03296, hypothetical_protein, M6 family metalloprotease domain	NA|389aa|down_1|NC_020449.1_274989_276156_-	cd03798, GT4_WlbH-like, Bordetella parapertussis WlbH and similar proteins	NA|425aa|down_2|NC_020449.1_276152_277427_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|251aa|down_3|NC_020449.1_277423_278176_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|488aa|down_4|NC_020449.1_278172_279636_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|483aa|down_5|NC_020449.1_279628_281077_-	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown]	NA|447aa|down_6|NC_020449.1_281073_282414_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|191aa|down_7|NC_020449.1_282863_283436_-	cd02062, Nitro_FMN_reductase, nitroreductase family protein	NA|666aa|down_8|NC_020449.1_284023_286021_-	COG5426, COG5426, Uncharacterized membrane protein [Function unknown]	NA|417aa|down_9|NC_020449.1_286020_287271_-	NA
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	5	320579-320677	4	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TAACGACGGTTTTTAACCCGGCGAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|59aa|up_0|NC_020449.1_320149_320326_-,NA	NA|110aa|up_9|NC_020449.1_309966_310296_+	PRK05583, PRK05583, ribosomal protein L7Ae family protein; Provisional	NA|847aa|up_8|NC_020449.1_310292_312833_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|162aa|up_7|NC_020449.1_312832_313318_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|335aa|up_6|NC_020449.1_313397_314402_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|294aa|up_5|NC_020449.1_314376_315258_+	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like	NA|304aa|up_4|NC_020449.1_315369_316281_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|644aa|up_3|NC_020449.1_316329_318261_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|318aa|up_2|NC_020449.1_318270_319224_+	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional	NA|262aa|up_1|NC_020449.1_319328_320114_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|59aa|up_0|NC_020449.1_320149_320326_-	NA	NA|790aa|down_0|NC_020449.1_321934_324304_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|857aa|down_1|NC_020449.1_324428_326999_+	pfam13646, HEAT_2, HEAT repeats	NA|214aa|down_2|NC_020449.1_326995_327637_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|255aa|down_3|NC_020449.1_327661_328426_+	pfam13614, AAA_31, AAA domain	NA|286aa|down_4|NC_020449.1_328437_329295_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|357aa|down_5|NC_020449.1_329291_330362_+	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|375aa|down_6|NC_020449.1_330597_331722_+	cd05683, M20_peptT_like, M20 Peptidase T like enzymes specifically cleave tripeptides	NA|250aa|down_7|NC_020449.1_331722_332472_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|263aa|down_8|NC_020449.1_332465_333254_+	PRK00450, dapF, diaminopimelate epimerase; Provisional	NA|207aa|down_9|NC_020449.1_333241_333862_+	pfam13413, HTH_25, Helix-turn-helix domain
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	6	385220-385527	5	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	AAAAAGTTCCGTAGGAACGACAGATATTAACAACGGGTTTTAACCC	46	0	0	NA	NA	NA	3	3	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA	NA|300aa|up_9|NC_020449.1_371937_372837_+	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	NA|426aa|up_8|NC_020449.1_372841_374119_+	cd01116, P_permease, Permease P (pink-eyed dilution)	NA|1174aa|up_7|NC_020449.1_374441_377963_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|71aa|up_6|NC_020449.1_378465_378678_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|297aa|up_5|NC_020449.1_378670_379561_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|145aa|up_4|NC_020449.1_379557_379992_+	PRK00601, dut, dUTP diphosphatase	NA|304aa|up_3|NC_020449.1_379994_380906_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|188aa|up_2|NC_020449.1_381814_382378_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|354aa|up_1|NC_020449.1_382370_383432_+	pfam16125, DUF4837, Domain of unknown function (DUF4837)	NA|582aa|up_0|NC_020449.1_383428_385174_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|859aa|down_0|NC_020449.1_386145_388722_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|427aa|down_1|NC_020449.1_389446_390727_-	TIGR00442, hisS, histidyl-tRNA synthetase	NA|256aa|down_2|NC_020449.1_391071_391839_-	pfam09573, RE_TaqI, TaqI restriction endonuclease	NA|472aa|down_3|NC_020449.1_391843_393259_-	pfam12950, TaqI_C, TaqI-like C-terminal specificity domain	NA|124aa|down_4|NC_020449.1_393728_394100_+	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|168aa|down_5|NC_020449.1_394104_394608_+	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|250aa|down_6|NC_020449.1_394621_395371_+	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|151aa|down_7|NC_020449.1_395375_395828_-	pfam00731, AIRC, AIR carboxylase	NA|223aa|down_8|NC_020449.1_395831_396500_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|167aa|down_9|NC_020449.1_396595_397096_+	pfam04390, LptE, Lipopolysaccharide-assembly
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	7	423695-423818	6	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	CAGATGCATATAATTGTCAACAATAATTGGAGGAATCAG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|350aa|down_8|NC_020449.1_434250_435300_+,NA|509aa|down_9|NC_020449.1_435303_436830_+	NA|343aa|up_9|NC_020449.1_415820_416849_-	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|168aa|up_8|NC_020449.1_416841_417345_-	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|128aa|up_7|NC_020449.1_417341_417725_-	pfam02152, FolB, Dihydroneopterin aldolase	NA|137aa|up_6|NC_020449.1_417721_418132_-	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC	NA|160aa|up_5|NC_020449.1_418133_418613_-	TIGR02199, rfaE_dom_II, rfaE bifunctional protein, domain II	NA|331aa|up_4|NC_020449.1_418599_419592_-	TIGR02198, Uncharacterized_sugar_kinase_BU060, rfaE bifunctional protein, domain I	NA|461aa|up_3|NC_020449.1_419732_421115_-	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]	NA|211aa|up_2|NC_020449.1_421124_421757_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|450aa|up_1|NC_020449.1_421743_423093_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|123aa|up_0|NC_020449.1_423175_423544_-	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein	NA|284aa|down_0|NC_020449.1_423951_424803_-	pfam13565, HTH_32, Homeodomain-like domain	NA|818aa|down_1|NC_020449.1_425852_428306_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|173aa|down_2|NC_020449.1_428489_429008_-	pfam02417, Chromate_transp, Chromate transporter	NA|178aa|down_3|NC_020449.1_429004_429538_-	pfam02417, Chromate_transp, Chromate transporter	NA|356aa|down_4|NC_020449.1_429540_430608_-	pfam04551, GcpE, GcpE protein	NA|362aa|down_5|NC_020449.1_430638_431724_-	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)	NA|352aa|down_6|NC_020449.1_432095_433151_-	TIGR04317, W_rSAM_matur, tungsten cofactor oxidoreducase radical SAM maturase	NA|82aa|down_7|NC_020449.1_433311_433557_-	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|350aa|down_8|NC_020449.1_434250_435300_+	NA	NA|509aa|down_9|NC_020449.1_435303_436830_+	NA
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	8	632605-632687	7	CRISPRCasFinder	no	cas3	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Unclear	CGCGGTGAAGTTTTGACTCTAAACCGAC	28	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|143aa|up_6|NC_020449.1_621150_621579_-,NA|201aa|up_5|NC_020449.1_621579_622182_-,NA|216aa|up_0|NC_020449.1_631102_631750_-,NA|185aa|down_3|NC_020449.1_649890_650445_-,NA|122aa|down_6|NC_020449.1_656339_656705_-,NA|169aa|down_7|NC_020449.1_656994_657501_-,NA|93aa|down_8|NC_020449.1_658366_658645_+	NA|45aa|up_9|NC_020449.1_614244_614379_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	cas3|1128aa|up_8|NC_020449.1_615186_618570_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|726aa|up_7|NC_020449.1_618970_621148_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|143aa|up_6|NC_020449.1_621150_621579_-	NA	NA|201aa|up_5|NC_020449.1_621579_622182_-	NA	NA|470aa|up_4|NC_020449.1_622178_623588_-	sd00006, TPR, Tetratricopeptide repeat	NA|246aa|up_3|NC_020449.1_623568_624306_-	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain	NA|366aa|up_2|NC_020449.1_624308_625406_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|726aa|up_1|NC_020449.1_628917_631095_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|216aa|up_0|NC_020449.1_631102_631750_-	NA	NA|193aa|down_0|NC_020449.1_633293_633872_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1965aa|down_1|NC_020449.1_636280_642175_-	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein	NA|2076aa|down_2|NC_020449.1_643614_649842_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|185aa|down_3|NC_020449.1_649890_650445_-	NA	NA|596aa|down_4|NC_020449.1_651185_652973_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|1042aa|down_5|NC_020449.1_653208_656334_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|122aa|down_6|NC_020449.1_656339_656705_-	NA	NA|169aa|down_7|NC_020449.1_656994_657501_-	NA	NA|93aa|down_8|NC_020449.1_658366_658645_+	NA	NA|188aa|down_9|NC_020449.1_658754_659318_+	PRK00529, PRK00529, elongation factor P; Validated
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	9	643066-643149	8	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TGATGTTTTGACTCTAAACCGACCCTTTT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|143aa|up_8|NC_020449.1_621150_621579_-,NA|201aa|up_7|NC_020449.1_621579_622182_-,NA|216aa|up_2|NC_020449.1_631102_631750_-,NA|185aa|down_1|NC_020449.1_649890_650445_-,NA|122aa|down_4|NC_020449.1_656339_656705_-,NA|169aa|down_5|NC_020449.1_656994_657501_-,NA|93aa|down_6|NC_020449.1_658366_658645_+,NA|69aa|down_8|NC_020449.1_659330_659537_+	NA|726aa|up_9|NC_020449.1_618970_621148_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|143aa|up_8|NC_020449.1_621150_621579_-	NA	NA|201aa|up_7|NC_020449.1_621579_622182_-	NA	NA|470aa|up_6|NC_020449.1_622178_623588_-	sd00006, TPR, Tetratricopeptide repeat	NA|246aa|up_5|NC_020449.1_623568_624306_-	cd16272, RNaseZ_MBL-fold, Ribonuclease Z; MBL-fold metallo-hydrolase domain	NA|366aa|up_4|NC_020449.1_624308_625406_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|726aa|up_3|NC_020449.1_628917_631095_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|216aa|up_2|NC_020449.1_631102_631750_-	NA	NA|193aa|up_1|NC_020449.1_633293_633872_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1965aa|up_0|NC_020449.1_636280_642175_-	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein	NA|2076aa|down_0|NC_020449.1_643614_649842_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|185aa|down_1|NC_020449.1_649890_650445_-	NA	NA|596aa|down_2|NC_020449.1_651185_652973_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|1042aa|down_3|NC_020449.1_653208_656334_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|122aa|down_4|NC_020449.1_656339_656705_-	NA	NA|169aa|down_5|NC_020449.1_656994_657501_-	NA	NA|93aa|down_6|NC_020449.1_658366_658645_+	NA	NA|188aa|down_7|NC_020449.1_658754_659318_+	PRK00529, PRK00529, elongation factor P; Validated	NA|69aa|down_8|NC_020449.1_659330_659537_+	NA	NA|1046aa|down_9|NC_020449.1_659818_662956_+	TIGR03296, hypothetical_protein, M6 family metalloprotease domain
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	10	683361-683906	1	PILER-CR	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TTTTCCGAGGGGTTTACACACCCATCGCTATTATTGTGTCGCCCTGACGGGCTTT	55	0	0	NA	NA	NA	5	5	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|69aa|up_9|NC_020449.1_659330_659537_+,NA|301aa|up_7|NC_020449.1_663070_663973_+,NA|120aa|up_5|NC_020449.1_668240_668600_+,NA|644aa|up_2|NC_020449.1_677641_679573_-,NA|101aa|up_1|NC_020449.1_679591_679894_-,NA|377aa|down_0|NC_020449.1_684073_685204_-,NA|133aa|down_2|NC_020449.1_687094_687493_-	NA|69aa|up_9|NC_020449.1_659330_659537_+	NA	NA|1046aa|up_8|NC_020449.1_659818_662956_+	TIGR03296, hypothetical_protein, M6 family metalloprotease domain	NA|301aa|up_7|NC_020449.1_663070_663973_+	NA	NA|1405aa|up_6|NC_020449.1_663986_668201_+	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins	NA|120aa|up_5|NC_020449.1_668240_668600_+	NA	NA|1193aa|up_4|NC_020449.1_670671_674250_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|810aa|up_3|NC_020449.1_675252_677682_-	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein	NA|644aa|up_2|NC_020449.1_677641_679573_-	NA	NA|101aa|up_1|NC_020449.1_679591_679894_-	NA	NA|737aa|up_0|NC_020449.1_680543_682754_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|377aa|down_0|NC_020449.1_684073_685204_-	NA	NA|621aa|down_1|NC_020449.1_685216_687079_-	pfam13941, MutL, MutL protein	NA|133aa|down_2|NC_020449.1_687094_687493_-	NA	NA|236aa|down_3|NC_020449.1_687494_688202_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|229aa|down_4|NC_020449.1_688173_688860_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|84aa|down_5|NC_020449.1_688864_689116_-	pfam02700, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase	NA|1114aa|down_6|NC_020449.1_689231_692573_-	PRK13909, PRK13909, RecB-like helicase	NA|941aa|down_7|NC_020449.1_692569_695392_-	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|508aa|down_8|NC_020449.1_695514_697038_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|282aa|down_9|NC_020449.1_697914_698760_+	cd01144, BtuF, Cobalamin binding protein BtuF
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	11	748794-748879	9	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TCATCCTGTTCATCCCCTACCTATT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|57aa|down_0|NC_020449.1_748886_749057_-,NA|120aa|down_2|NC_020449.1_751233_751593_+,NA|149aa|down_3|NC_020449.1_752234_752681_+	NA|401aa|up_9|NC_020449.1_729453_730656_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|216aa|up_8|NC_020449.1_730652_731300_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|474aa|up_7|NC_020449.1_731695_733117_+	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|1818aa|up_6|NC_020449.1_733182_738636_+	cd10913, Peptidase_C25_N_gingipain, gingipain subgroup of the Peptidase C25 family N-terminal domain	NA|374aa|up_5|NC_020449.1_739359_740481_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|327aa|up_4|NC_020449.1_740480_741461_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|621aa|up_3|NC_020449.1_741697_743560_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|825aa|up_2|NC_020449.1_744063_746538_-	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]	NA|349aa|up_1|NC_020449.1_746534_747581_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|372aa|up_0|NC_020449.1_747593_748709_-	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|57aa|down_0|NC_020449.1_748886_749057_-	NA	NA|555aa|down_1|NC_020449.1_749311_750976_-	cd10931, CE4_u7, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily	NA|120aa|down_2|NC_020449.1_751233_751593_+	NA	NA|149aa|down_3|NC_020449.1_752234_752681_+	NA	NA|125aa|down_4|NC_020449.1_752773_753148_+	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins	NA|257aa|down_5|NC_020449.1_753217_753988_+	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose	NA|354aa|down_6|NC_020449.1_753992_755054_+	TIGR02622, CDP-glucose_46-dehydratase, CDP-glucose 4,6-dehydratase	NA|188aa|down_7|NC_020449.1_755043_755607_+	cd00438, cupin_RmlC, RmlC carbohydrate epimerase, involved in dTDP-L-rhamnose production	NA|439aa|down_8|NC_020449.1_755596_756913_+	PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional	NA|240aa|down_9|NC_020449.1_756927_757647_+	cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	12	802543-802646	10	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TAACAACGGGTTTTAACCCGGTGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|350aa|down_6|NC_020449.1_810183_811233_-,NA|422aa|down_7|NC_020449.1_811545_812811_+	NA|123aa|up_9|NC_020449.1_793828_794197_+	TIGR04256, conserved_hypothetical_protein, GxxExxY protein	NA|255aa|up_8|NC_020449.1_794228_794993_+	cd10931, CE4_u7, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily	NA|278aa|up_7|NC_020449.1_795120_795954_+	cd10941, CE4_PuuE_HpPgdA_like_2, Putative catalytic domain of uncharacterized prokaryotic polysaccharide deacetylases similar to bacterial PuuE allantoinases and Helicobacter pylori peptidoglycan deacetylase (HpPgdA)	NA|153aa|up_6|NC_020449.1_796124_796583_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|331aa|up_5|NC_020449.1_796598_797591_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|229aa|up_4|NC_020449.1_797597_798284_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|310aa|up_3|NC_020449.1_798689_799619_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|132aa|up_2|NC_020449.1_799678_800074_+	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily	NA|132aa|up_1|NC_020449.1_800150_800546_+	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily	NA|533aa|up_0|NC_020449.1_800581_802180_+	pfam02397, Bac_transf, Bacterial sugar transferase	NA|535aa|down_0|NC_020449.1_803269_804874_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|587aa|down_1|NC_020449.1_805354_807115_+	smart00060, FN3, Fibronectin type 3 domain	NA|68aa|down_2|NC_020449.1_807164_807368_+	TIGR04256, conserved_hypothetical_protein, GxxExxY protein	NA|132aa|down_3|NC_020449.1_807741_808137_+	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily	NA|68aa|down_4|NC_020449.1_808213_808417_+	TIGR04256, conserved_hypothetical_protein, GxxExxY protein	NA|389aa|down_5|NC_020449.1_808747_809914_-	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism]	NA|350aa|down_6|NC_020449.1_810183_811233_-	NA	NA|422aa|down_7|NC_020449.1_811545_812811_+	NA	NA|128aa|down_8|NC_020449.1_812871_813255_+	cd16372, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family	NA|711aa|down_9|NC_020449.1_813265_815398_+	pfam01314, AFOR_C, Aldehyde ferredoxin oxidoreductase, domains 2 & 3
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	13	868451-868529	11	CRISPRCasFinder	no	csa3	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Type I-A	ATCTGTGAAATCTGTGAGAGGTAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|183aa|up_9|NC_020449.1_855757_856306_+,NA	NA|183aa|up_9|NC_020449.1_855757_856306_+	NA	NA|301aa|up_8|NC_020449.1_856318_857221_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|303aa|up_7|NC_020449.1_857222_858131_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|144aa|up_6|NC_020449.1_858127_858559_+	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|431aa|up_5|NC_020449.1_858558_859851_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|298aa|up_4|NC_020449.1_860209_861103_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|853aa|up_3|NC_020449.1_861992_864551_-	cd07538, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporters	NA|351aa|up_2|NC_020449.1_864759_865812_+	COG1420, HrcA, Transcriptional regulator of heat shock gene [Transcription]	NA|186aa|up_1|NC_020449.1_865808_866366_+	cd00446, GrpE, nucleotide exchange factor GrpE	NA|653aa|up_0|NC_020449.1_866366_868325_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|386aa|down_0|NC_020449.1_868545_869703_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|234aa|down_1|NC_020449.1_869708_870410_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|79aa|down_2|NC_020449.1_870657_870894_+	pfam14358, DUF4405, Domain of unknown function (DUF4405)	NA|351aa|down_3|NC_020449.1_871203_872256_-	pfam02606, LpxK, Tetraacyldisaccharide-1-P 4'-kinase	NA|126aa|down_4|NC_020449.1_872256_872634_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|294aa|down_5|NC_020449.1_872630_873512_-	cd01414, SAICAR_synt_Sc, non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase	NA|313aa|down_6|NC_020449.1_873521_874460_-	COG0322, UvrC, Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]	NA|267aa|down_7|NC_020449.1_875079_875880_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|302aa|down_8|NC_020449.1_875876_876782_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|396aa|down_9|NC_020449.1_876778_877966_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	14	947197-947337	12	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TTTACGAGGGGCTTACGCCACCATCGCTATCATTGTGTCGCCCT	44	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|50aa|up_5|NC_020449.1_936358_936508_+,NA|412aa|up_1|NC_020449.1_944410_945646_+,NA|108aa|down_1|NC_020449.1_949758_950082_+	NA|341aa|up_9|NC_020449.1_929658_930681_-	pfam09084, NMT1, NMT1/THI5 like	NA|531aa|up_8|NC_020449.1_931253_932846_-	PRK05380, pyrG, CTP synthetase; Validated	NA|415aa|up_7|NC_020449.1_932858_934103_-	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]	NA|399aa|up_6|NC_020449.1_934668_935865_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|50aa|up_5|NC_020449.1_936358_936508_+	NA	NA|535aa|up_4|NC_020449.1_938545_940150_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|108aa|up_3|NC_020449.1_943414_943738_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|91aa|up_2|NC_020449.1_943742_944015_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|412aa|up_1|NC_020449.1_944410_945646_+	NA	NA|212aa|up_0|NC_020449.1_945629_946265_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|668aa|down_0|NC_020449.1_947629_949633_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|108aa|down_1|NC_020449.1_949758_950082_+	NA	NA|143aa|down_2|NC_020449.1_950078_950507_+	pfam00334, NDK, Nucleoside diphosphate kinase	NA|292aa|down_3|NC_020449.1_951323_952199_-	sd00006, TPR, Tetratricopeptide repeat	NA|1013aa|down_4|NC_020449.1_952202_955241_-	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41	NA|431aa|down_5|NC_020449.1_955369_956662_-	pfam03961, FapA, Flagellar Assembly Protein A	NA|230aa|down_6|NC_020449.1_956654_957344_-	cd16833, YfiH, protein of unknown function YfiH	NA|437aa|down_7|NC_020449.1_957340_958651_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|453aa|down_8|NC_020449.1_958653_960012_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|175aa|down_9|NC_020449.1_960019_960544_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	15	964886-964970	13	CRISPRCasFinder	no	cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Type III-D,Type III-B,Type III-C,Type III-A	GTGTTCTCGGTGGCTAAAAAATGAA	25	0	0	NA	NA	NA	1	1	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|171aa|down_3|NC_020449.1_971248_971761_-,NA|146aa|down_5|NC_020449.1_972079_972517_+,NA|151aa|down_6|NC_020449.1_972547_973000_+	NA|292aa|up_9|NC_020449.1_951323_952199_-	sd00006, TPR, Tetratricopeptide repeat	NA|1013aa|up_8|NC_020449.1_952202_955241_-	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41	NA|431aa|up_7|NC_020449.1_955369_956662_-	pfam03961, FapA, Flagellar Assembly Protein A	NA|230aa|up_6|NC_020449.1_956654_957344_-	cd16833, YfiH, protein of unknown function YfiH	NA|437aa|up_5|NC_020449.1_957340_958651_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|453aa|up_4|NC_020449.1_958653_960012_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|175aa|up_3|NC_020449.1_960019_960544_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|639aa|up_2|NC_020449.1_960550_962467_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|183aa|up_1|NC_020449.1_962778_963327_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|483aa|up_0|NC_020449.1_963307_964756_-	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|818aa|down_0|NC_020449.1_965207_967661_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|462aa|down_1|NC_020449.1_968492_969878_-	pfam13148, DUF3987, Protein of unknown function (DUF3987)	NA|344aa|down_2|NC_020449.1_969867_970899_-	smart00943, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal	NA|171aa|down_3|NC_020449.1_971248_971761_-	NA	NA|55aa|down_4|NC_020449.1_971841_972006_+	pfam03154, Atrophin-1, Atrophin-1 family	NA|146aa|down_5|NC_020449.1_972079_972517_+	NA	NA|151aa|down_6|NC_020449.1_972547_973000_+	NA	NA|90aa|down_7|NC_020449.1_973217_973487_-	pfam00872, Transposase_mut, Transposase, Mutator family	cas6|315aa|down_8|NC_020449.1_973612_974557_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas10|836aa|down_9|NC_020449.1_974726_977234_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	16	992831-998746	2,14,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Type III-D,Type III-B,Type III-C,Type III-A	ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC,ATTGAAATAAACTTGACCCGTTTGAGGGGATTGTGAC,ATTGAAATAAACTTGACCCGTTTGAGGGGATTG,ATTGAAATAAACTTGACCCGTTTGAGGGGATTGAGAC	37,37,33,37	0	0	NA	NA	NA:NA:NA:NA	75,77,77,75	77	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|300aa|up_6|NC_020449.1_985440_986340_-,NA|271aa|up_5|NC_020449.1_986356_987169_-,NA|454aa|up_3|NC_020449.1_989551_990913_+,NA|83aa|up_0|NC_020449.1_992570_992819_+,NA|274aa|down_3|NC_020449.1_1002813_1003635_+,NA|384aa|down_4|NC_020449.1_1003644_1004796_+,NA|111aa|down_5|NC_020449.1_1004811_1005144_+,NA|223aa|down_8|NC_020449.1_1010355_1011024_+,NA|82aa|down_9|NC_020449.1_1011099_1011345_-	csm6|364aa|up_9|NC_020449.1_980490_981582_+	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csx1|688aa|up_8|NC_020449.1_981573_983637_-	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively	NA|507aa|up_7|NC_020449.1_983645_985166_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|300aa|up_6|NC_020449.1_985440_986340_-	NA	NA|271aa|up_5|NC_020449.1_986356_987169_-	NA	PrimPol|631aa|up_4|NC_020449.1_987649_989542_+	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown]	NA|454aa|up_3|NC_020449.1_989551_990913_+	NA	cas1|345aa|up_2|NC_020449.1_990912_991947_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|97aa|up_1|NC_020449.1_992096_992387_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|83aa|up_0|NC_020449.1_992570_992819_+	NA	NA|397aa|down_0|NC_020449.1_1000031_1001222_+	TIGR04012, poly_gGlu_PgsB, poly-gamma-glutamate synthase PgsB/CapB	NA|148aa|down_1|NC_020449.1_1001230_1001674_+	pfam14102, Caps_synth_CapC, Capsule biosynthesis CapC	NA|375aa|down_2|NC_020449.1_1001676_1002801_+	TIGR04332, hypothetical_protein, poly-gamma-glutamate system protein	NA|274aa|down_3|NC_020449.1_1002813_1003635_+	NA	NA|384aa|down_4|NC_020449.1_1003644_1004796_+	NA	NA|111aa|down_5|NC_020449.1_1004811_1005144_+	NA	NA|336aa|down_6|NC_020449.1_1005146_1006154_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|983aa|down_7|NC_020449.1_1007331_1010280_+	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|223aa|down_8|NC_020449.1_1010355_1011024_+	NA	NA|82aa|down_9|NC_020449.1_1011099_1011345_-	NA
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	17	1094500-1094613	15	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	AGTTCCGTAGGAACGACAGATATTAAC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|222aa|down_2|NC_020449.1_1096604_1097270_+,NA|204aa|down_4|NC_020449.1_1098314_1098926_-,NA|175aa|down_5|NC_020449.1_1098909_1099434_-	NA|439aa|up_9|NC_020449.1_1078536_1079853_-	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA|200aa|up_8|NC_020449.1_1079849_1080449_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|160aa|up_7|NC_020449.1_1080445_1080925_-	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|251aa|up_6|NC_020449.1_1080933_1081686_-	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|686aa|up_5|NC_020449.1_1081999_1084057_-	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|90aa|up_4|NC_020449.1_1084348_1084618_+	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|224aa|up_3|NC_020449.1_1084674_1085346_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|431aa|up_2|NC_020449.1_1085345_1086638_+	pfam11013, DUF2851, Protein of unknown function (DUF2851)	NA|1111aa|up_1|NC_020449.1_1086884_1090217_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|1252aa|up_0|NC_020449.1_1090227_1093983_+	pfam07669, Eco57I, Eco57I restriction-modification methylase	NA|440aa|down_0|NC_020449.1_1095031_1096351_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|84aa|down_1|NC_020449.1_1096337_1096589_+	pfam13707, RloB, RloB-like protein	NA|222aa|down_2|NC_020449.1_1096604_1097270_+	NA	NA|156aa|down_3|NC_020449.1_1097812_1098280_-	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component	NA|204aa|down_4|NC_020449.1_1098314_1098926_-	NA	NA|175aa|down_5|NC_020449.1_1098909_1099434_-	NA	NA|114aa|down_6|NC_020449.1_1099433_1099775_-	cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic SMC3 proteins	NA|156aa|down_7|NC_020449.1_1099896_1100364_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|566aa|down_8|NC_020449.1_1100360_1102058_-	pfam13623, SurA_N_2, SurA N-terminal domain	NA|869aa|down_9|NC_020449.1_1102054_1104661_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	18	1247568-1247691	16	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	AACCCGGTGAAAAAGAATCCAGGATATTTATTTCTT	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|263aa|down_0|NC_020449.1_1248787_1249576_-	NA|203aa|up_9|NC_020449.1_1236162_1236771_+	PRK01558, PRK01558, V-type ATP synthase subunit E; Provisional	NA|296aa|up_8|NC_020449.1_1236774_1237662_+	pfam10962, DUF2764, Protein of unknown function (DUF2764)	NA|585aa|up_7|NC_020449.1_1237675_1239430_+	PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional	NA|441aa|up_6|NC_020449.1_1239429_1240752_+	PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional	NA|200aa|up_5|NC_020449.1_1240748_1241348_+	PRK02195, PRK02195, V-type ATP synthase subunit D; Provisional	NA|596aa|up_4|NC_020449.1_1241344_1243132_+	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|157aa|up_3|NC_020449.1_1243191_1243662_+	PRK06558, PRK06558, V-type ATP synthase subunit K; Validated	NA|291aa|up_2|NC_020449.1_1243736_1244609_-	PRK09039, PRK09039, peptidoglycan -binding protein	NA|468aa|up_1|NC_020449.1_1244693_1246097_+	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]	NA|252aa|up_0|NC_020449.1_1246093_1246849_+	COG1381, RecO, Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]	NA|263aa|down_0|NC_020449.1_1248787_1249576_-	NA	NA|290aa|down_1|NC_020449.1_1249572_1250442_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|1100aa|down_2|NC_020449.1_1250535_1253835_-	NF033455, BREX_6_MTaseX, BREX-6 system adenine-specific DNA-methyltransferase PglX	NA|1117aa|down_3|NC_020449.1_1253825_1257176_-	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family	NA|459aa|down_4|NC_020449.1_1257833_1259210_-	pfam13349, DUF4097, Putative adhesin	NA|120aa|down_5|NC_020449.1_1259206_1259566_-	pfam09862, DUF2089, Protein of unknown function (DUF2089)	NA|189aa|down_6|NC_020449.1_1260054_1260621_+	pfam06695, Sm_multidrug_ex, Putative small multi-drug export protein	NA|382aa|down_7|NC_020449.1_1260617_1261763_+	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed	NA|216aa|down_8|NC_020449.1_1261755_1262403_+	cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374	NA|761aa|down_9|NC_020449.1_1262876_1265159_-	pfam01640, Peptidase_C10, Peptidase C10 family
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	19	1323976-1324285	3	CRT	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	ACAAAGAGAAAAAGAGATAAAG	22	0	0	NA	NA	NA	6	6	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|144aa|down_0|NC_020449.1_1325614_1326046_-	NA|67aa|up_9|NC_020449.1_1318986_1319187_-	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed	NA|140aa|up_8|NC_020449.1_1319183_1319603_-	PRK09203, rplP, 50S ribosomal protein L16; Reviewed	NA|216aa|up_7|NC_020449.1_1319615_1320263_-	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed	NA|115aa|up_6|NC_020449.1_1320273_1320618_-	PRK00565, rplV, 50S ribosomal protein L22; Reviewed	NA|93aa|up_5|NC_020449.1_1320628_1320907_-	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed	NA|276aa|up_4|NC_020449.1_1320923_1321751_-	PRK09374, rplB, 50S ribosomal protein L2; Validated	NA|96aa|up_3|NC_020449.1_1321762_1322050_-	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|212aa|up_2|NC_020449.1_1322046_1322682_-	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|211aa|up_1|NC_020449.1_1322692_1323325_-	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|109aa|up_0|NC_020449.1_1323327_1323654_-	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|144aa|down_0|NC_020449.1_1325614_1326046_-	NA	NA|457aa|down_1|NC_020449.1_1326069_1327440_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|290aa|down_2|NC_020449.1_1327436_1328306_-	PRK05457, PRK05457, protease HtpX	NA|448aa|down_3|NC_020449.1_1328670_1330014_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|405aa|down_4|NC_020449.1_1330198_1331413_+	TIGR01885, Ornithine_aminotransferase, ornithine aminotransferase	NA|295aa|down_5|NC_020449.1_1331457_1332342_+	PRK00089, era, GTPase Era; Reviewed	NA|2131aa|down_6|NC_020449.1_1332369_1338762_-	TIGR04189, gliding_motility-related_protein, cell surface protein SprA	NA|273aa|down_7|NC_020449.1_1338772_1339591_-	PRK13318, PRK13318, type III pantothenate kinase	NA|727aa|down_8|NC_020449.1_1340279_1342460_-	cd07302, CHD, cyclase homology domain	NA|224aa|down_9|NC_020449.1_1342474_1343146_-	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	20	1389375-1389453	17	CRISPRCasFinder	no	RT	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Unclear	AATAGAACGCAGATAACTGGATCAAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|65aa|up_6|NC_020449.1_1383944_1384139_-,NA|266aa|up_5|NC_020449.1_1384355_1385153_+,NA|389aa|up_4|NC_020449.1_1385278_1386445_+,NA|233aa|up_3|NC_020449.1_1386441_1387140_+,NA|277aa|up_2|NC_020449.1_1387136_1387967_+,NA|213aa|up_1|NC_020449.1_1387963_1388602_+,NA|83aa|down_5|NC_020449.1_1396320_1396569_+	NA|173aa|up_9|NC_020449.1_1381942_1382461_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|116aa|up_8|NC_020449.1_1382432_1382780_-	pfam07085, DRTGG, DRTGG domain	NA|227aa|up_7|NC_020449.1_1383070_1383751_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|65aa|up_6|NC_020449.1_1383944_1384139_-	NA	NA|266aa|up_5|NC_020449.1_1384355_1385153_+	NA	NA|389aa|up_4|NC_020449.1_1385278_1386445_+	NA	NA|233aa|up_3|NC_020449.1_1386441_1387140_+	NA	NA|277aa|up_2|NC_020449.1_1387136_1387967_+	NA	NA|213aa|up_1|NC_020449.1_1387963_1388602_+	NA	NA|247aa|up_0|NC_020449.1_1388611_1389352_+	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	RT|344aa|down_0|NC_020449.1_1389918_1390950_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|111aa|down_1|NC_020449.1_1390942_1391275_-	cd16376, Avd_like, diversity-generating retroelement protein bAvd and similar proteins	NA|147aa|down_2|NC_020449.1_1391264_1391705_-	pfam00570, HRDC, HRDC domain	NA|276aa|down_3|NC_020449.1_1393142_1393970_-	pfam13860, FlgD_ig, FlgD Ig-like domain	NA|570aa|down_4|NC_020449.1_1394598_1396308_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|83aa|down_5|NC_020449.1_1396320_1396569_+	NA	NA|368aa|down_6|NC_020449.1_1396569_1397673_-	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|534aa|down_7|NC_020449.1_1397672_1399274_-	TIGR02397, DNA_polymerase_III_subunit_gamma, DNA polymerase III, subunit gamma and tau	NA|407aa|down_8|NC_020449.1_1399417_1400638_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|446aa|down_9|NC_020449.1_1401102_1402440_+	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	21	1426599-1426738	18	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	GGAAAAAAGTTCCGGAGGAACGACAGATATTAACAACGGGTTTTAACCCGGTG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|323aa|up_2|NC_020449.1_1424152_1425121_+,NA|220aa|up_1|NC_020449.1_1425108_1425768_+,NA|216aa|up_0|NC_020449.1_1425778_1426426_+,NA	NA|933aa|up_9|NC_020449.1_1411257_1414056_-	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|536aa|up_8|NC_020449.1_1414049_1415657_-	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA|711aa|up_7|NC_020449.1_1415882_1418015_+	pfam13861, FLgD_tudor, FlgD Tudor-like domain	NA|150aa|up_6|NC_020449.1_1418250_1418700_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|60aa|up_5|NC_020449.1_1418956_1419136_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|342aa|up_4|NC_020449.1_1419746_1420772_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|1045aa|up_3|NC_020449.1_1421000_1424135_+	TIGR03296, hypothetical_protein, M6 family metalloprotease domain	NA|323aa|up_2|NC_020449.1_1424152_1425121_+	NA	NA|220aa|up_1|NC_020449.1_1425108_1425768_+	NA	NA|216aa|up_0|NC_020449.1_1425778_1426426_+	NA	NA|158aa|down_0|NC_020449.1_1427011_1427485_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|711aa|down_1|NC_020449.1_1428084_1430217_+	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|155aa|down_2|NC_020449.1_1430209_1430674_+	pfam02130, UPF0054, Uncharacterized protein family UPF0054	NA|422aa|down_3|NC_020449.1_1430676_1431942_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|212aa|down_4|NC_020449.1_1432007_1432643_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|119aa|down_5|NC_020449.1_1432639_1432996_+	COG5652, COG5652, Predicted integral membrane protein [Function unknown]	NA|239aa|down_6|NC_020449.1_1432982_1433699_+	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents	NA|175aa|down_7|NC_020449.1_1433695_1434220_+	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I	NA|683aa|down_8|NC_020449.1_1434216_1436265_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|390aa|down_9|NC_020449.1_1436283_1437453_+	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	22	1486615-1498952	4,19,4	PILER-CR,CRISPRCasFinder,CRT	no	cas4,cas2,cas1,cas3,cas5,cas7b,cas8b1,cas6	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Type I-B	GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC,GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC,GTTTCAATCCTTGATTTAATGGACTGTAGAGTAAAAAC	38,38,38	0	0	NA	NA	I-B:I-B:I-B	166,166,166	166	TypeI-B	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|165aa|up_6|NC_020449.1_1476710_1477205_+,NA|85aa|up_0|NC_020449.1_1485678_1485933_-,NA|94aa|down_8|NC_020449.1_1508494_1508776_-	NA|408aa|up_9|NC_020449.1_1470461_1471685_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|248aa|up_8|NC_020449.1_1471662_1472406_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|1355aa|up_7|NC_020449.1_1472421_1476486_+	pfam04357, TamB, TamB, inner membrane protein subunit of TAM complex	NA|165aa|up_6|NC_020449.1_1476710_1477205_+	NA	NA|310aa|up_5|NC_020449.1_1477854_1478784_-	TIGR00300, TIGR00300, TIGR00300 family protein	NA|194aa|up_4|NC_020449.1_1478731_1479313_-	pfam02677, DUF208, Uncharacterized BCR, COG1636	NA|382aa|up_3|NC_020449.1_1479458_1480604_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|378aa|up_2|NC_020449.1_1481175_1482309_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|409aa|up_1|NC_020449.1_1482729_1483956_-	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|85aa|up_0|NC_020449.1_1485678_1485933_-	NA	cas4|197aa|down_0|NC_020449.1_1499422_1500013_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|97aa|down_1|NC_020449.1_1500009_1500300_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|353aa|down_2|NC_020449.1_1500293_1501352_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas3|804aa|down_3|NC_020449.1_1501351_1503763_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|260aa|down_4|NC_020449.1_1503759_1504539_-	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7b|290aa|down_5|NC_020449.1_1504551_1505421_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|682aa|down_6|NC_020449.1_1505413_1507459_-	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|224aa|down_7|NC_020449.1_1507455_1508127_-	pfam17262, DUF5328, Family of unknown function (DUF5328)	NA|94aa|down_8|NC_020449.1_1508494_1508776_-	NA	NA|329aa|down_9|NC_020449.1_1509265_1510252_-	pfam02169, LPP20, LPP20 lipoprotein
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	23	1574372-1574468	20	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	GTTAAAATATATGAGCTCGTCAGCT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|304aa|up_4|NC_020449.1_1566332_1567244_+,NA|370aa|up_2|NC_020449.1_1568256_1569366_+,NA|798aa|up_0|NC_020449.1_1570068_1572462_+,NA|332aa|down_4|NC_020449.1_1579755_1580751_+,NA|309aa|down_9|NC_020449.1_1585424_1586351_-	NA|875aa|up_9|NC_020449.1_1557899_1560524_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|633aa|up_8|NC_020449.1_1560537_1562436_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|548aa|up_7|NC_020449.1_1563642_1565286_-	TIGR03904, putative_radical_SAM_protein_YgiQ, uncharacterized radical SAM protein YgiQ	NA|71aa|up_6|NC_020449.1_1565350_1565563_-	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|119aa|up_5|NC_020449.1_1565976_1566333_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|304aa|up_4|NC_020449.1_1566332_1567244_+	NA	NA|315aa|up_3|NC_020449.1_1567308_1568253_+	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed	NA|370aa|up_2|NC_020449.1_1568256_1569366_+	NA	NA|226aa|up_1|NC_020449.1_1569378_1570056_+	pfam04773, FecR, FecR protein	NA|798aa|up_0|NC_020449.1_1570068_1572462_+	NA	NA|217aa|down_0|NC_020449.1_1574829_1575480_-	pfam13707, RloB, RloB-like protein	NA|436aa|down_1|NC_020449.1_1575460_1576768_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|353aa|down_2|NC_020449.1_1577424_1578483_+	cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|416aa|down_3|NC_020449.1_1578497_1579745_+	TIGR03820, lys_2_3_AblA, lysine-2,3-aminomutase	NA|332aa|down_4|NC_020449.1_1579755_1580751_+	NA	NA|315aa|down_5|NC_020449.1_1580755_1581700_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|415aa|down_6|NC_020449.1_1581696_1582941_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|242aa|down_7|NC_020449.1_1583353_1584079_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|450aa|down_8|NC_020449.1_1584075_1585425_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|309aa|down_9|NC_020449.1_1585424_1586351_-	NA
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	24	1591856-1591969	21	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TAACGACGGGTTTTAACCCGGCGAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|332aa|up_9|NC_020449.1_1579755_1580751_+,NA|309aa|up_4|NC_020449.1_1585424_1586351_-,NA|363aa|up_0|NC_020449.1_1590001_1591090_+,NA|112aa|down_2|NC_020449.1_1594350_1594686_+	NA|332aa|up_9|NC_020449.1_1579755_1580751_+	NA	NA|315aa|up_8|NC_020449.1_1580755_1581700_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|415aa|up_7|NC_020449.1_1581696_1582941_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|242aa|up_6|NC_020449.1_1583353_1584079_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|450aa|up_5|NC_020449.1_1584075_1585425_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|309aa|up_4|NC_020449.1_1585424_1586351_-	NA	NA|180aa|up_3|NC_020449.1_1586347_1586887_-	pfam09819, ABC_cobalt, ABC-type cobalt transport system, permease component	NA|158aa|up_2|NC_020449.1_1586886_1587360_-	COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism]	NA|636aa|up_1|NC_020449.1_1587821_1589729_+	pfam14885, GHL15, Hypothetical glycosyl hydrolase family 15	NA|363aa|up_0|NC_020449.1_1590001_1591090_+	NA	NA|135aa|down_0|NC_020449.1_1592190_1592595_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|403aa|down_1|NC_020449.1_1592587_1593796_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|112aa|down_2|NC_020449.1_1594350_1594686_+	NA	NA|919aa|down_3|NC_020449.1_1594886_1597643_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|243aa|down_4|NC_020449.1_1597742_1598471_-	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|126aa|down_5|NC_020449.1_1598634_1599012_+	TIGR00320, Desulfoferrodoxin_homolog, desulfoferrodoxin	NA|197aa|down_6|NC_020449.1_1599032_1599623_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|47aa|down_7|NC_020449.1_1599643_1599784_+	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|151aa|down_8|NC_020449.1_1599865_1600318_+	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|225aa|down_9|NC_020449.1_1600314_1600989_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	25	1610523-1610646	22	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TCTCTTTATTTTCCATCTCTCCATCTCGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|119aa|up_1|NC_020449.1_1608016_1608373_-,NA	NA|126aa|up_9|NC_020449.1_1598634_1599012_+	TIGR00320, Desulfoferrodoxin_homolog, desulfoferrodoxin	NA|197aa|up_8|NC_020449.1_1599032_1599623_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|47aa|up_7|NC_020449.1_1599643_1599784_+	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|151aa|up_6|NC_020449.1_1599865_1600318_+	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|225aa|up_5|NC_020449.1_1600314_1600989_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|1389aa|up_4|NC_020449.1_1601132_1605299_+	pfam04231, Endonuclease_1, Endonuclease I	NA|231aa|up_3|NC_020449.1_1606535_1607228_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|254aa|up_2|NC_020449.1_1607227_1607989_-	pfam02405, MlaE, Permease MlaE	NA|119aa|up_1|NC_020449.1_1608016_1608373_-	NA	NA|306aa|up_0|NC_020449.1_1608414_1609332_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|156aa|down_0|NC_020449.1_1610711_1611179_+	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|438aa|down_1|NC_020449.1_1611190_1612504_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_2|NC_020449.1_1613069_1613843_-	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA|465aa|down_3|NC_020449.1_1613839_1615234_-	PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed	NA|350aa|down_4|NC_020449.1_1615233_1616283_-	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional	NA|210aa|down_5|NC_020449.1_1616279_1616909_-	smart00935, OmpH, Outer membrane protein (OmpH-like)	NA|485aa|down_6|NC_020449.1_1616939_1618394_-	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|448aa|down_7|NC_020449.1_1618390_1619734_-	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|418aa|down_8|NC_020449.1_1623422_1624676_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|570aa|down_9|NC_020449.1_1624700_1626410_-	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	26	1707974-1708072	23	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	GGAAGGCAAGTGAAAATTGTGAGTCAAAAAAGGA	34	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|245aa|down_0|NC_020449.1_1708087_1708822_+	NA|224aa|up_9|NC_020449.1_1698232_1698904_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|177aa|up_8|NC_020449.1_1698900_1699431_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|77aa|up_7|NC_020449.1_1699431_1699662_-	pfam13083, KH_4, KH domain	NA|98aa|up_6|NC_020449.1_1699688_1699982_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|441aa|up_5|NC_020449.1_1700098_1701421_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|311aa|up_4|NC_020449.1_1701417_1702350_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|192aa|up_3|NC_020449.1_1702346_1702922_-	cd09895, NGN_SP_UpxY, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), UpxY	NA|467aa|up_2|NC_020449.1_1702924_1704325_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|744aa|up_1|NC_020449.1_1704348_1706580_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|90aa|up_0|NC_020449.1_1706857_1707127_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|245aa|down_0|NC_020449.1_1708087_1708822_+	NA	NA|353aa|down_1|NC_020449.1_1708833_1709892_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|246aa|down_2|NC_020449.1_1710179_1710917_-	TIGR04571, LmtA_Leptospira, lipid A Kdo2 1-phosphate O-methyltransferase	NA|405aa|down_3|NC_020449.1_1711151_1712366_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|397aa|down_4|NC_020449.1_1712700_1713891_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|404aa|down_5|NC_020449.1_1713887_1715099_+	TIGR02967, guanine_deaminase, guanine deaminase	NA|210aa|down_6|NC_020449.1_1715219_1715849_+	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type	NA|71aa|down_7|NC_020449.1_1716181_1716394_-	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|206aa|down_8|NC_020449.1_1716397_1717015_-	PRK08644, PRK08644, sulfur carrier protein ThiS adenylyltransferase ThiF	NA|250aa|down_9|NC_020449.1_1717011_1717761_-	PRK14494, PRK14494, putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	27	1790402-1790494	24	CRISPRCasFinder	no	DinG	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Type IV-A	GGGAATGCAACCGTTATGAATACCTATAT	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|343aa|down_0|NC_020449.1_1791719_1792748_+,NA|148aa|down_1|NC_020449.1_1793527_1793971_-,NA|241aa|down_2|NC_020449.1_1794678_1795401_-	NA|359aa|up_9|NC_020449.1_1773994_1775071_+	PRK00064, recF, recombination protein F; Reviewed	NA|411aa|up_8|NC_020449.1_1775067_1776300_+	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily	NA|353aa|up_7|NC_020449.1_1776477_1777536_+	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|594aa|up_6|NC_020449.1_1777559_1779341_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|201aa|up_5|NC_020449.1_1779307_1779910_+	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|423aa|up_4|NC_020449.1_1779906_1781175_+	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme	NA|260aa|up_3|NC_020449.1_1781297_1782077_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|307aa|up_2|NC_020449.1_1782073_1782994_-	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	DinG|961aa|up_1|NC_020449.1_1783011_1785894_-	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	NA|1428aa|up_0|NC_020449.1_1785909_1790193_-	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]	NA|343aa|down_0|NC_020449.1_1791719_1792748_+	NA	NA|148aa|down_1|NC_020449.1_1793527_1793971_-	NA	NA|241aa|down_2|NC_020449.1_1794678_1795401_-	NA	NA|1010aa|down_3|NC_020449.1_1801570_1804600_-	pfam13860, FlgD_ig, FlgD Ig-like domain	NA|241aa|down_4|NC_020449.1_1805476_1806199_-	PRK13189, PRK13189, peroxiredoxin; Provisional	NA|343aa|down_5|NC_020449.1_1807022_1808051_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|331aa|down_6|NC_020449.1_1808070_1809063_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|383aa|down_7|NC_020449.1_1809072_1810221_-	cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	NA|448aa|down_8|NC_020449.1_1811142_1812486_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|349aa|down_9|NC_020449.1_1812496_1813543_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	28	1804939-1805060	25	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	GGAACTCTTTCTTAACAAAAGAGATAAGTTGTTT	34	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|343aa|up_3|NC_020449.1_1791719_1792748_+,NA|148aa|up_2|NC_020449.1_1793527_1793971_-,NA|241aa|up_1|NC_020449.1_1794678_1795401_-,NA	NA|201aa|up_9|NC_020449.1_1779307_1779910_+	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|423aa|up_8|NC_020449.1_1779906_1781175_+	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme	NA|260aa|up_7|NC_020449.1_1781297_1782077_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|307aa|up_6|NC_020449.1_1782073_1782994_-	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	DinG|961aa|up_5|NC_020449.1_1783011_1785894_-	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	NA|1428aa|up_4|NC_020449.1_1785909_1790193_-	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]	NA|343aa|up_3|NC_020449.1_1791719_1792748_+	NA	NA|148aa|up_2|NC_020449.1_1793527_1793971_-	NA	NA|241aa|up_1|NC_020449.1_1794678_1795401_-	NA	NA|1010aa|up_0|NC_020449.1_1801570_1804600_-	pfam13860, FlgD_ig, FlgD Ig-like domain	NA|241aa|down_0|NC_020449.1_1805476_1806199_-	PRK13189, PRK13189, peroxiredoxin; Provisional	NA|343aa|down_1|NC_020449.1_1807022_1808051_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|331aa|down_2|NC_020449.1_1808070_1809063_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|383aa|down_3|NC_020449.1_1809072_1810221_-	cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	NA|448aa|down_4|NC_020449.1_1811142_1812486_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|349aa|down_5|NC_020449.1_1812496_1813543_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|425aa|down_6|NC_020449.1_1813539_1814814_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|391aa|down_7|NC_020449.1_1814800_1815973_-	cd03798, GT4_WlbH-like, Bordetella parapertussis WlbH and similar proteins	NA|580aa|down_8|NC_020449.1_1816134_1817874_-	pfam13290, CHB_HEX_C_1, Chitobiase/beta-hexosaminidase C-terminal domain	NA|267aa|down_9|NC_020449.1_1817879_1818680_-	pfam01148, CTP_transf_1, Cytidylyltransferase family
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	29	1851804-1851890	26	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	ATTTTCACCATCTCACTATTTTGCCATCTC	30	1	2	1851834-1851860|1851834-1851860	NC_020449.1_1851793-1851819|NC_020449.1_1851875-1851901	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|192aa|down_6|NC_020449.1_1859462_1860038_-,NA|279aa|down_8|NC_020449.1_1860499_1861336_-	NA|486aa|up_9|NC_020449.1_1838854_1840312_+	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain	NA|314aa|up_8|NC_020449.1_1840265_1841207_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|336aa|up_7|NC_020449.1_1841355_1842363_+	pfam09084, NMT1, NMT1/THI5 like	NA|269aa|up_6|NC_020449.1_1842368_1843175_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|430aa|up_5|NC_020449.1_1844611_1845901_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|397aa|up_4|NC_020449.1_1845946_1847137_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|780aa|up_3|NC_020449.1_1847133_1849473_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|155aa|up_2|NC_020449.1_1849469_1849934_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|299aa|up_1|NC_020449.1_1849933_1850830_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|271aa|up_0|NC_020449.1_1850844_1851657_-	pfam04199, Cyclase, Putative cyclase	NA|466aa|down_0|NC_020449.1_1851937_1853335_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|506aa|down_1|NC_020449.1_1853328_1854846_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|305aa|down_2|NC_020449.1_1854856_1855771_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|447aa|down_3|NC_020449.1_1857084_1858425_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|218aa|down_4|NC_020449.1_1858443_1859097_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|105aa|down_5|NC_020449.1_1859078_1859393_-	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|192aa|down_6|NC_020449.1_1859462_1860038_-	NA	NA|149aa|down_7|NC_020449.1_1860056_1860503_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|279aa|down_8|NC_020449.1_1860499_1861336_-	NA	NA|79aa|down_9|NC_020449.1_1861336_1861573_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	30	1856199-1856314	27	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	GAAGAACCTACAAAACTATCCTTCTTTT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA,NA|192aa|down_3|NC_020449.1_1859462_1860038_-,NA|279aa|down_5|NC_020449.1_1860499_1861336_-	NA|269aa|up_9|NC_020449.1_1842368_1843175_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|430aa|up_8|NC_020449.1_1844611_1845901_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|397aa|up_7|NC_020449.1_1845946_1847137_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|780aa|up_6|NC_020449.1_1847133_1849473_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|155aa|up_5|NC_020449.1_1849469_1849934_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|299aa|up_4|NC_020449.1_1849933_1850830_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|271aa|up_3|NC_020449.1_1850844_1851657_-	pfam04199, Cyclase, Putative cyclase	NA|466aa|up_2|NC_020449.1_1851937_1853335_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|506aa|up_1|NC_020449.1_1853328_1854846_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|305aa|up_0|NC_020449.1_1854856_1855771_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|447aa|down_0|NC_020449.1_1857084_1858425_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|218aa|down_1|NC_020449.1_1858443_1859097_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|105aa|down_2|NC_020449.1_1859078_1859393_-	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|192aa|down_3|NC_020449.1_1859462_1860038_-	NA	NA|149aa|down_4|NC_020449.1_1860056_1860503_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|279aa|down_5|NC_020449.1_1860499_1861336_-	NA	NA|79aa|down_6|NC_020449.1_1861336_1861573_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|148aa|down_7|NC_020449.1_1861582_1862026_-	pfam00436, SSB, Single-strand binding protein family	NA|96aa|down_8|NC_020449.1_1862036_1862324_-	pfam01250, Ribosomal_S6, Ribosomal protein S6	NA|199aa|down_9|NC_020449.1_1862323_1862920_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	31	2003680-2003830	28	CRISPRCasFinder	no	cas3	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Unclear	GATAGCGATGGTGGCGTAAGCCCCTCGAAAAATGTAAGCCCCGACTTCTTTT	52	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|217aa|up_6|NC_020449.1_1997182_1997833_-,NA|215aa|up_2|NC_020449.1_2001447_2002092_-,NA|63aa|down_5|NC_020449.1_2010596_2010785_+	NA|351aa|up_9|NC_020449.1_1994274_1995327_-	pfam04231, Endonuclease_1, Endonuclease I	NA|203aa|up_8|NC_020449.1_1995339_1995948_-	PRK13937, PRK13937, phosphoheptose isomerase; Provisional	NA|360aa|up_7|NC_020449.1_1995961_1997041_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|217aa|up_6|NC_020449.1_1997182_1997833_-	NA	NA|408aa|up_5|NC_020449.1_1997822_1999046_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|310aa|up_4|NC_020449.1_1999133_2000063_-	cd06590, RNase_HII_bacteria_HIII_like, Bacterial type 2 ribonuclease, HII and HIII-like	NA|427aa|up_3|NC_020449.1_2000055_2001336_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|215aa|up_2|NC_020449.1_2001447_2002092_-	NA	NA|177aa|up_1|NC_020449.1_2002147_2002678_-	cd16896, LT_Slt70-like, uncharacterized lytic transglycosylase subfamily with similarity to Slt70	NA|162aa|up_0|NC_020449.1_2002817_2003303_-	cd01045, Ferritin_like_AB, Uncharacterized family of ferritin-like proteins found in archaea and bacteria	NA|200aa|down_0|NC_020449.1_2004347_2004947_+	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains	NA|317aa|down_1|NC_020449.1_2004946_2005897_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|299aa|down_2|NC_020449.1_2006151_2007048_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|486aa|down_3|NC_020449.1_2007051_2008509_-	COG0281, SfcA, Malic enzyme [Energy production and conversion]	NA|518aa|down_4|NC_020449.1_2009023_2010577_+	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit	NA|63aa|down_5|NC_020449.1_2010596_2010785_+	NA	NA|662aa|down_6|NC_020449.1_2010798_2012784_+	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|124aa|down_7|NC_020449.1_2013092_2013464_+	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|179aa|down_8|NC_020449.1_2013618_2014155_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|274aa|down_9|NC_020449.1_2014120_2014942_+	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	32	2074426-2074545	29	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	TCGCCCTGCGGGCTTTGAAAAAATCTCAAC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|254aa|up_1|NC_020449.1_2072319_2073081_-,NA|322aa|up_0|NC_020449.1_2073074_2074040_-,NA	NA|451aa|up_9|NC_020449.1_2063216_2064569_-	PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional	NA|578aa|up_8|NC_020449.1_2064569_2066303_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|88aa|up_7|NC_020449.1_2066303_2066567_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|330aa|up_6|NC_020449.1_2066535_2067525_-	TIGR00679, HPr_kinase/phosphorylase, Hpr(Ser) kinase/phosphatase	NA|179aa|up_5|NC_020449.1_2067741_2068278_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|469aa|up_4|NC_020449.1_2068293_2069700_-	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|486aa|up_3|NC_020449.1_2069700_2071158_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|250aa|up_2|NC_020449.1_2071154_2071904_-	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system	NA|254aa|up_1|NC_020449.1_2072319_2073081_-	NA	NA|322aa|up_0|NC_020449.1_2073074_2074040_-	NA	NA|360aa|down_0|NC_020449.1_2074579_2075659_-	pfam13100, OstA_2, OstA-like protein	NA|185aa|down_1|NC_020449.1_2075652_2076207_-	TIGR04409, LptC_YrbK, LPS export ABC transporter periplasmic protein LptC	NA|187aa|down_2|NC_020449.1_2076166_2076727_-	cd01630, HAD_KDO-like, haloacid dehalogenase-like (HAD) hydrolase, similar to Escherichia coli 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) phosphatase KdsC, and rainbow trout N-acylneuraminate cytidylyltransferase	NA|265aa|down_3|NC_020449.1_2076748_2077543_-	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|389aa|down_4|NC_020449.1_2077574_2078741_-	cd18079, S-AdoMet_synt, S-adenosylmethionine synthetase	NA|517aa|down_5|NC_020449.1_2079322_2080873_+	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit	NA|280aa|down_6|NC_020449.1_2080883_2081723_+	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|238aa|down_7|NC_020449.1_2081726_2082440_+	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|379aa|down_8|NC_020449.1_2082435_2083572_+	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|307aa|down_9|NC_020449.1_2083609_2084530_+	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains
GCF_000146065.2_ASM14606v1	NC_020449	Candidatus Cloacimonas acidaminovorans str. Evry, complete genome	33	2242767-2242903	30	CRISPRCasFinder	no		cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	Orphan	AGGGCGACACAATGATGTAGAGGGTGCGTAAGCCCCTCG	39	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csm6,csx1,PrimPol,cas1,cas2,RT,cas4,cas5,cas7b,cas8b1,DinG	NA|387aa|up_5|NC_020449.1_2234745_2235906_+,NA	NA|412aa|up_9|NC_020449.1_2229675_2230911_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|360aa|up_8|NC_020449.1_2230910_2231990_+	TIGR00765, tRNA_processing_ribonuclease_BN_RNase_BN	NA|516aa|up_7|NC_020449.1_2231986_2233534_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|335aa|up_6|NC_020449.1_2233769_2234774_+	PRK11524, PRK11524, adenine-specific DNA-methyltransferase	NA|387aa|up_5|NC_020449.1_2234745_2235906_+	NA	NA|572aa|up_4|NC_020449.1_2236347_2238063_+	TIGR00705, Protease_4, signal peptide peptidase SppA, 67K type	NA|506aa|up_3|NC_020449.1_2238135_2239653_+	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|101aa|up_2|NC_020449.1_2239661_2239964_-	pfam04023, FeoA, FeoA domain	NA|727aa|up_1|NC_020449.1_2239944_2242125_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|153aa|up_0|NC_020449.1_2242114_2242573_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|225aa|down_0|NC_020449.1_2242991_2243666_-	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|641aa|down_1|NC_020449.1_2243887_2245810_+	pfam16120, DUF4836, Domain of unknown function (DUF4836)	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
