bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	4.1|850369|26|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	92.31	26	2	0	1	26	287072	287047	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	287047-287072	CGGGCCCCCAACATAGAAGCTGGCGG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	4.1|850369|26|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	92.31	26	2	0	1	26	812055	812030	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	812030-812055	CGGGGCCCCAACATAGAAGCAGGCGG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	4.1|850369|26|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	92.31	26	2	0	1	26	964336	964311	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	964311-964336	CGGGGCCCCAACACAGAGGCTGGTGG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	5.1|900203|34|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	100.00	34	0	0	1	34	1395572	1395539	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1395539-1395572	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	5.1|900203|34|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	100.00	34	0	0	1	34	1487388	1487421	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1487388-1487421	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	7.1|1184945|26|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	96.15	26	1	0	1	26	287047	287072	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	287047-287072	CGGGCCCCCAACATAGAAGCTGGCGG	1
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	7.1|1184945|26|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	96.15	26	1	0	1	26	812030	812055	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	812030-812055	CGGGGCCCCAACATAGAAGCAGGCGG	1
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	7.1|1184945|26|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	92.31	26	2	0	1	26	812086	812111	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	812086-812111	CGGGGCCCCAACATAAAAGCAGGCGG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.1|2421141|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	1184934	1184902	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1184902-1184934	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.1|2421141|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	1395526	1395494	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1395494-1395526	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.1|2421141|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	1487434	1487466	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1487434-1487466	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.1|2421141|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	2031594	2031626	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2031594-2031626	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.1|2421141|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	2695148	2695180	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2695148-2695180	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.2|2421197|36|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	100.00	36	0	0	1	36	1184881	1184846	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1184846-1184881	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.2|2421197|36|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	97.22	36	1	0	1	36	1853686	1853651	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1853651-1853686	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.2|2421197|36|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	94.44	36	2	0	1	36	287207	287172	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	287172-287207	TAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.2|2421197|36|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	94.44	36	2	0	1	36	1666491	1666526	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1666491-1666526	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.2|2421197|36|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	94.44	36	2	0	1	36	2042338	2042373	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2042338-2042373	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.3|2421256|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	1184934	1184902	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1184902-1184934	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.3|2421256|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	1395526	1395494	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1395494-1395526	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.3|2421256|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	2031594	2031626	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2031594-2031626	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	11.3|2421256|33|NC_017341|CRT	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	93.94	33	2	0	1	33	2695148	2695180	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2695148-2695180	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	12.1|2917660|32|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	96.88	32	1	0	1	32	850505	850536	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	850505-850536	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	12.1|2917660|32|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	96.88	32	1	0	1	32	1110586	1110617	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1110586-1110617	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	12.1|2917660|32|NC_017341|CRISPRCasFinder	NC_017341.1	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	96.88	32	1	0	1	32	1487478	1487509	419000-419100|686715-686807|802460-802542|850339-850424|900179-900260|1100626-1100713|1184915-1185000|1954012-1954139|2295085-2295235|2322304-2322431|2421118-2421311|2917634-2917717	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1487478-1487509	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
