The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	389017	404610	2924344	terminase,integrase,coat	Staphylococcus_phage(75.0%)	26	390553:390574	405317:405338
WP_001052483.1|389017_389209_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|389452_389749_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934798.1|389769_390273_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.1	3.5e-60
WP_000897044.1|390324_390567_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
390553:390574	attL	AAAGAAGAACAATAATATATAA	NA	NA	NA	NA
WP_001800370.1|390798_391593_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	30.0	5.6e-28
WP_000270135.1|391630_392845_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
WP_000230361.1|393005_393629_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001611932.1|393777_393942_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001138305.1|393942_394215_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
WP_000784892.1|394226_394400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|394366_394570_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403839.1|394571_394955_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
WP_001103965.1|394955_395282_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	98.1	1.8e-54
WP_001002722.1|395346_396216_+	primase alpha helix C-terminal domain-containing protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	75.8	2.2e-131
WP_000151864.1|396227_397598_+	DNA primase family protein	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	95.0	2.4e-257
WP_001059599.1|397840_398197_+	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
WP_001003076.1|398198_398462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001019280.1|398463_399105_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.8	8.5e-112
WP_001190614.1|399640_399982_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_000214170.1|400012_400666_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
WP_000771359.1|400718_401246_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.1	1.9e-88
WP_025174984.1|401377_401590_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
WP_001281787.1|401586_402156_+|terminase	terminase small subunit	terminase	A0A1W6JQF0	Staphylococcus_phage	97.9	4.6e-101
WP_000801982.1|402432_403401_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_073392942.1|403542_403980_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000813311.1|404097_404610_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
405317:405338	attR	AAAGAAGAACAATAATATATAA	NA	NA	NA	NA
>prophage 2
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	423799	439812	2924344	integrase	Streptococcus_phage(76.92%)	15	419707:419721	435636:435650
419707:419721	attL	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000264071.1|423799_425266_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424966.1|425290_426832_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000237796.1|426899_428093_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000633907.1|428119_428320_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845143.1|428817_429048_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_000804879.1|429044_429467_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	7.5e-48
WP_001227350.1|429997_430351_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_032506803.1|430408_430597_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
WP_000691737.1|430694_432614_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
WP_001791010.1|432629_432746_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000584387.1|432990_433920_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
WP_000768373.1|433936_434959_-	bifunctional lysozyme/C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
WP_000192392.1|434955_436983_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.5	2.3e-195
435636:435650	attR	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000331166.1|436979_439433_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.7	0.0e+00
WP_000723887.1|439416_439812_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
>prophage 3
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	442964	451131	2924344		Streptococcus_phage(85.71%)	10	NA	NA
WP_000870467.1|442964_443459_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.4	2.8e-54
WP_000675717.1|443525_444305_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|444346_444568_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055376.1|444564_444855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426690.1|444851_446036_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	68.1	8.3e-161
WP_001130246.1|446217_447621_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	1.4e-175
WP_000185762.1|447642_448416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234191.1|448425_448803_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000421279.1|448823_449138_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_000181735.1|449337_451131_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
>prophage 4
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	780567	788387	2924344		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|780567_781623_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|781622_782309_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|782283_782757_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|783098_783539_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|783818_784403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|784501_785215_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|785218_785638_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|785639_786308_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|786658_787252_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|787235_788387_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 5
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	800359	815188	2924344		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|800359_801418_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|801768_802311_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|802990_803908_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|803998_804100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|804177_805683_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|806023_806524_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|806543_807410_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|808210_808609_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|808571_810677_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|810794_811766_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|812321_812477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|812515_813487_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|813473_814430_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|814426_815188_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 6
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	893231	916548	2924344	terminase,integrase,coat,transposase	Staphylococcus_phage(80.95%)	32	904276:904294	918837:918855
WP_000868132.1|893231_894317_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_001557544.1|894313_896206_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000361059.1|896212_896590_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000067268.1|896740_897523_+	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_001072197.1|897648_898380_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	48.8	4.2e-54
WP_181875734.1|898437_898497_-	erythromycin resistance leader peptide	NA	NA	NA	NA	NA
WP_001092058.1|898888_899551_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001018962.1|900816_901203_+	topiosmerase	NA	NA	NA	NA	NA
WP_001065801.1|901195_901492_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000571218.1|901741_902767_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|902759_903455_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|903472_904294_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
904276:904294	attL	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000264182.1|904437_905658_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	3.5e-98
WP_000733773.1|905745_906474_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	2.4e-22
WP_001033317.1|906497_907226_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	7.9e-29
WP_000142630.1|907400_908135_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
WP_001063624.1|908284_908497_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	98.6	3.4e-33
WP_001138298.1|908497_908770_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	100.0	3.4e-46
WP_000784885.1|908781_908928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058492.1|908920_909130_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
WP_001103946.1|909132_909426_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	61.8	1.8e-24
WP_001002692.1|909513_910383_+	primase alpha helix C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	97.2	3.8e-163
WP_000432707.1|910399_911857_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.7	1.4e-279
WP_001039172.1|912158_912521_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	96.7	2.9e-64
WP_000998180.1|912522_912807_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	1.6e-49
WP_001019783.1|912803_913445_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.8	2.7e-113
WP_041174166.1|913871_914234_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.1	2.3e-53
WP_000846279.1|914245_914824_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	40.0	3.3e-30
WP_000448776.1|914841_915060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771365.1|915110_915638_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.6e-87
WP_025174984.1|915769_915982_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
WP_001281786.1|915978_916548_+|terminase	terminase small subunit	terminase	A0A1W6JQF0	Staphylococcus_phage	98.4	1.2e-101
918837:918855	attR	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 7
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	1009414	1050492	2924344	transposase,bacteriocin,protease,tRNA	Streptococcus_phage(40.0%)	36	NA	NA
WP_000448927.1|1009414_1010404_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1010698_1011094_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|1011464_1012184_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000082731.1|1013337_1015146_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|1015605_1016412_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214065.1|1016434_1016800_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224622.1|1016903_1017497_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|1017682_1018030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1018046_1018682_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1018698_1019508_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|1019504_1020359_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|1020379_1021765_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395155.1|1021774_1023619_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000195429.1|1023900_1025073_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000933195.1|1025228_1025999_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1026193_1027279_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570698.1|1027620_1029189_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|1029330_1030089_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|1030282_1030792_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154222.1|1030904_1032095_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1032072_1033248_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|1033680_1035162_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1035145_1035406_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049959.1|1035405_1036968_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|1037269_1038073_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014532858.1|1038291_1040616_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|1040632_1041991_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|1042129_1043641_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1044127_1044697_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1044906_1045125_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1045205_1046192_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1046390_1046567_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1046581_1047184_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1048100_1048202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1048211_1048484_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1048527_1050492_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 8
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	1085850	1094323	2924344		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1085850_1086333_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1086319_1087444_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1087447_1088152_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1088151_1088415_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1088416_1089088_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1089080_1091270_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1091248_1092733_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1092725_1093754_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1093756_1094323_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 9
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	1715560	1724603	2924344	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1715560_1716079_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594994.1|1716100_1718374_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	8.9e-63
WP_000749795.1|1718576_1720856_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1721130_1721391_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112046.1|1721409_1722549_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.2	2.4e-85
WP_001019172.1|1722571_1723597_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1723598_1724603_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 10
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	1834802	1913682	2924344	transposase,tRNA	Staphylococcus_phage(89.36%)	72	NA	NA
WP_000195429.1|1834802_1835975_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001791758.1|1836249_1836354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000193898.1|1836488_1837688_-	membrane protein	NA	NA	NA	NA	NA
WP_000383814.1|1837761_1838253_-	DUF948 domain-containing protein	NA	NA	NA	NA	NA
WP_000150163.1|1838326_1839640_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_000118291.1|1839663_1843488_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
WP_001048363.1|1843508_1844105_-|tRNA	DUF4479 domain-containing tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_001091387.1|1844133_1844991_-	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_000811163.1|1845090_1845402_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001024576.1|1845466_1846543_-	M42 family metallopeptidase	NA	NA	NA	NA	NA
WP_000163826.1|1846629_1846941_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_000689580.1|1847065_1847908_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000093392.1|1848432_1848918_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_001266157.1|1849119_1849764_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_000434765.1|1849778_1850570_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000411085.1|1851119_1851968_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_000265417.1|1851971_1853381_-	Mn(2+)-dependent dipeptidase Sapep	NA	NA	NA	NA	NA
WP_001051859.1|1854138_1854516_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_001217125.1|1854532_1855228_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000004335.1|1855224_1856886_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_000285019.1|1857292_1858561_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	100.0	4.1e-57
WP_001050548.1|1858677_1865238_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1865563_1865875_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1865896_1868314_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1868601_1869783_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1869892_1870846_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1870842_1871406_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1871525_1871927_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1873507_1874335_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1874337_1874457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1874568_1875570_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1875691_1876156_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159024.1|1876168_1877350_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_000493892.1|1877360_1877993_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077335.1|1877999_1879043_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	6.3e-197
WP_001261677.1|1879523_1881026_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1881548_1881863_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1881862_1883155_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1883172_1883568_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1883862_1884717_-	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1884992_1885217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|1885329_1886502_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001096491.1|1887577_1888291_-	transaldolase	NA	M1PR54	Cyanophage	35.3	1.2e-18
WP_000091445.1|1888550_1888853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1889108_1889474_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1889470_1889824_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000195429.1|1891002_1892175_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000671052.1|1892420_1892891_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1893003_1893447_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1893433_1893877_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_000195429.1|1894331_1895504_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000453320.1|1896567_1897401_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1897612_1898521_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1898645_1899839_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109900.1|1900209_1901802_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000093392.1|1901937_1902423_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_078055878.1|1902797_1903544_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	2.1e-141
WP_000672014.1|1903548_1904022_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1904087_1904345_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1904341_1905343_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1905347_1906826_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1906984_1907440_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1907742_1908393_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1908473_1909469_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1909544_1910171_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1910211_1910556_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1910653_1911205_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1911422_1912064_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1912177_1912363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1912364_1912541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1912551_1912935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1913538_1913682_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
>prophage 11
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	1946703	2021560	2924344	terminase,integrase,portal,transposase,tail,capsid,holin,tRNA,head,plate	Staphylococcus_phage(80.95%)	86	1989296:1989313	2025024:2025041
WP_000181398.1|1946703_1947174_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379978.1|1947178_1948306_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|1948456_1949179_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649907.1|1949171_1950629_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063582.1|1950886_1951948_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_001549130.1|1952440_1953802_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_031784974.1|1953777_1953891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110013.1|1962216_1962663_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869455.1|1962759_1963710_-	phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
WP_000939521.1|1963715_1964171_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_001011598.1|1964251_1965541_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1965833_1966928_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001791878.1|1967017_1967110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000597238.1|1967118_1968855_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251253.1|1969145_1969688_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284752.1|1969989_1971027_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379098.1|1971178_1972156_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886468.1|1972416_1973253_-	membrane protein	NA	NA	NA	NA	NA
WP_000535834.1|1973261_1974779_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1974793_1975108_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124419.1|1975085_1975904_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1976164_1976974_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163283.1|1977314_1977830_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005408.1|1977960_1978122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100250272.1|1978468_1978549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001148138.1|1979135_1980581_-	SH3 domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	98.5	1.0e-293
WP_000354132.1|1980561_1980999_-|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_000677972.1|1981054_1981450_-	hypothetical protein	NA	Q4ZBW9	Staphylococcus_virus	99.2	6.1e-68
WP_000276669.1|1981455_1982628_-|plate	BppU family phage baseplate upper protein	plate	A0EWN2	Staphylococcus_virus	99.0	1.2e-196
WP_000524037.1|1982640_1984515_-	glucosaminidase domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	99.7	0.0e+00
WP_000466769.1|1984651_1984951_-	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_001790193.1|1984991_1985165_-	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000705893.1|1985168_1985546_-	DUF2977 domain-containing protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
WP_000634520.1|1985545_1987369_-|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.8	0.0e+00
WP_000323261.1|1987368_1989267_-	hypothetical protein	NA	Q4ZBQ2	Staphylococcus_phage	99.8	0.0e+00
WP_001144703.1|1989279_1991166_-|tail	phage tail protein	tail	A0A2I6PCV9	Staphylococcus_phage	99.4	0.0e+00
1989296:1989313	attL	TAATAATCCTTGATTAAC	NA	NA	NA	NA
WP_000560193.1|1991176_1992112_-|tail	phage tail family protein	tail	A7YGW1	Staphylococcus_virus	98.7	4.5e-178
WP_000414232.1|1992126_1995096_-|terminase	terminase	terminase	A0A2H4PQM1	Staphylococcus_phage	98.9	2.6e-264
WP_000204080.1|1995098_1995440_-	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	99.1	7.8e-56
WP_000141081.1|1995460_1995955_-	hypothetical protein	NA	A0A0H4IPX9	Staphylococcus_phage	99.4	1.2e-86
WP_000046067.1|1996016_1996577_-	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000270196.1|1996563_1997001_-	DUF3168 domain-containing protein	NA	A0A0E3T9M9	Staphylococcus_phage	100.0	2.1e-77
WP_001151331.1|1997013_1997427_-	HK97 gp10 family phage protein	NA	A0A0E3XCY8	Staphylococcus_phage	99.3	4.4e-77
WP_000482985.1|1997413_1997749_-|head	phage head closure protein	head	A0A0H4ISR6	Staphylococcus_phage	99.1	1.4e-60
WP_000991902.1|1997741_1998056_-|head,tail	phage head-tail connector protein	head,tail	A0A2H4PQL2	Staphylococcus_phage	99.0	9.8e-53
WP_000278798.1|1998055_1998382_-	Rho termination factor N-terminal domain-containing protein	NA	A0A2H4PQK8	Staphylococcus_phage	98.1	4.7e-50
WP_001135557.1|1998398_1999223_-|capsid	N4-gp56 family major capsid protein	capsid	R4IH32	Staphylococcus_phage	99.6	1.6e-147
WP_000366933.1|1999243_1999840_-	phage scaffolding protein	NA	A0A0H4IP83	Staphylococcus_phage	79.3	1.7e-77
WP_049772008.1|1999937_2000918_-|head	phage head morphogenesis protein	head	A0A2H4PQJ8	Staphylococcus_phage	99.1	2.9e-180
WP_001159671.1|2000856_2002335_-|portal	phage portal protein	portal	A0A0E3T8M2	Staphylococcus_phage	99.4	1.1e-284
WP_001791146.1|2002288_2003497_-|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	99.8	4.0e-235
WP_000594083.1|2003489_2003984_-|terminase	terminase small subunit	terminase	A0A2I6PCU5	Staphylococcus_phage	99.4	4.9e-83
WP_000286968.1|2004338_2004740_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000595256.1|2004740_2004914_-	transcriptional activator RinB	NA	A0A0H3U4U1	Staphylococcus_phage	100.0	9.8e-23
WP_000195784.1|2004910_2005117_-	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_001282077.1|2005113_2005359_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000185680.1|2005395_2005932_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_001065023.1|2005936_2006173_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_001105618.1|2006165_2006450_-	hypothetical protein	NA	S4V9L1	Staphylococcus_phage	100.0	3.2e-47
WP_000695766.1|2006446_2006848_-	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	99.2	2.1e-68
WP_000228426.1|2006860_2007103_-	hypothetical protein	NA	A0A2D1G5G2	Staphylococcus_phage	97.5	1.2e-39
WP_001187254.1|2007720_2007906_-	DUF3113 family protein	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
WP_000049777.1|2007910_2008315_-	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	98.5	2.3e-70
WP_001123680.1|2008324_2008546_-	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	97.3	1.4e-34
WP_001024405.1|2008549_2008765_-	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
WP_001106166.1|2008761_2010003_-	AAA family ATPase	NA	M9NSS7	Staphylococcus_phage	100.0	2.6e-229
WP_001132236.1|2009999_2010356_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	99.2	2.4e-63
WP_001037657.1|2010355_2011111_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_001121810.1|2011103_2011778_-	hypothetical protein	NA	C8CGZ0	Staphylococcus_phage	100.0	4.7e-129
WP_000934775.1|2011791_2012220_-	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	91.5	6.8e-57
WP_000840497.1|2012219_2012873_-	ERF family protein	NA	A0A1J0MFT8	Staphylococcus_phage	61.4	2.6e-68
WP_001004335.1|2012873_2013410_-	host-nuclease inhibitor Gam family protein	NA	A0A0F6N4M6	Staphylococcus_phage	99.4	2.5e-80
WP_000291101.1|2013422_2013683_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	95.3	9.3e-41
WP_000048124.1|2013779_2013941_-	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_000977378.1|2013933_2014155_-	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_001791098.1|2014226_2014892_+	hypothetical protein	NA	Q9G033	Staphylococcus_virus	97.7	5.0e-115
WP_001148585.1|2015005_2015746_-	phage antirepressor KilAC domain-containing protein	NA	A0A0N7E0R7	Staphylococcus_phage	100.0	6.3e-135
WP_000394410.1|2015805_2016288_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000438352.1|2016388_2016568_-	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	100.0	1.7e-25
WP_001002759.1|2016583_2017348_-	phage antirepressor Ant	NA	R4IFK0	Staphylococcus_phage	99.6	2.7e-141
WP_000108122.1|2017347_2017542_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001055143.1|2017804_2018137_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000775187.1|2018153_2018828_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_000661437.1|2018855_2019581_+	PH domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000440838.1|2019612_2020317_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
WP_001145732.1|2020513_2021560_+|integrase	site-specific integrase	integrase	A0A0H3U2V9	Staphylococcus_phage	100.0	4.2e-201
2025024:2025041	attR	TAATAATCCTTGATTAAC	NA	NA	NA	NA
>prophage 12
NC_017341	Staphylococcus aureus subsp. aureus str. JKD6008, complete sequence	2924344	2056970	2161180	2924344	terminase,integrase,portal,transposase,tail,capsid,holin,head,protease	Staphylococcus_phage(91.36%)	127	2134773:2134791	2159164:2159182
WP_000827748.1|2056970_2058137_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2058167_2058494_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2058785_2058959_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2058939_2059542_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2059812_2060634_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2060626_2062096_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2062279_2063356_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2063375_2064170_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2064241_2064349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2064359_2065922_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2066126_2067224_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2067595_2068156_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2068208_2069138_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2069332_2069506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2069557_2070937_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181325.1|2071056_2072085_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2072354_2072756_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2073328_2073502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2073952_2074993_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713060.1|2075049_2075892_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2075888_2076446_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2076505_2077030_-	membrane protein	NA	NA	NA	NA	NA
WP_001106019.1|2077207_2077882_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	100.0	8.1e-129
WP_000611512.1|2077947_2078202_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|2078213_2078969_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920041.1|2079159_2079651_+	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000702262.1|2081148_2081499_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|2081551_2081812_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|2082122_2082302_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001549158.1|2083259_2085014_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001068542.1|2085638_2086925_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|2087124_2087223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|2087465_2087642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|2087905_2088286_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|2088282_2089179_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|2089179_2089860_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|2089856_2090729_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|2090728_2091469_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|2091534_2092098_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001106022.1|2092164_2092839_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	100.0	6.2e-129
WP_000175735.1|2093302_2093788_-	trimethoprim-resistant dihydrofolate reductase DfrC	NA	A0A0N9S8H6	Staphylococcus_phage	100.0	1.1e-90
WP_000282655.1|2093829_2094786_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	100.0	1.1e-190
WP_001106019.1|2094899_2095574_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	100.0	8.1e-129
WP_001791613.1|2096437_2096530_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000403117.1|2096672_2097905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000262986.1|2099443_2099701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000527036.1|2099873_2100353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002484480.1|2100358_2100997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000850931.1|2101102_2101621_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_000748213.1|2101698_2102565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000274669.1|2102678_2102933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001076470.1|2103258_2103870_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000842630.1|2104880_2105681_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000926712.1|2105777_2106056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002484873.1|2106271_2106424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002484872.1|2106410_2106569_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_002484560.1|2108286_2109024_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001807343.1|2109160_2109283_-	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_001077893.1|2109358_2109919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|2110120_2111293_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000393259.1|2111349_2111742_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_001028144.1|2111742_2113182_+	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000195429.1|2113311_2114484_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000622776.1|2114697_2116242_-	quaternary ammonium compound efflux MFS transporter QacA	NA	NA	NA	NA	NA
WP_001807342.1|2116419_2116986_+	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA	NA
WP_000797248.1|2117118_2117304_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001049146.1|2117308_2117647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000583528.1|2117892_2118501_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	34.4	3.6e-19
WP_000495112.1|2118783_2119047_+	DUF4238 domain-containing protein	NA	NA	NA	NA	NA
WP_001106019.1|2119076_2119751_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	100.0	8.1e-129
WP_072482930.1|2120019_2120196_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	3.8e-22
WP_000750412.1|2120304_2121078_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|2121450_2121825_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2121880_2122168_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000058.1|2122213_2122366_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_000582173.1|2122358_2126141_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.7	0.0e+00
WP_000567408.1|2126156_2127641_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001096355.1|2132411_2132762_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|2132811_2133036_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|2133077_2133722_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2133722_2134130_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|2134126_2134531_-	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2134527_2134890_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2134773:2134791	attL	ATAATTTTTCTTCTTTTTC	NA	NA	NA	NA
WP_000150936.1|2134873_2135158_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2135147_2135432_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|2135451_2136597_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000861914.1|2136620_2137358_-|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
WP_000025274.1|2137341_2138529_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2138544_2140206_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2140202_2140547_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2140677_2140977_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590126.1|2141208_2141625_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000265039.1|2141652_2141853_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	98.5	1.4e-28
WP_000595265.1|2141852_2142002_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195820.1|2141998_2142205_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_001066444.1|2142241_2142778_-	dUTP diphosphatase	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
WP_000197967.1|2142770_2143181_-	hypothetical protein	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
WP_001105598.1|2143177_2143687_-	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	100.0	3.2e-93
WP_000982711.1|2143683_2144133_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	2.1e-80
WP_000131366.1|2144197_2144440_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_000101274.1|2144443_2144812_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000401964.1|2144824_2145229_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|2145237_2145456_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148301.1|2145462_2146347_-	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	95.9	3.1e-136
WP_000934770.1|2146376_2146847_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
WP_071621397.1|2146847_2147465_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138481.1|2147545_2148466_-	recombinase RecT	NA	A0A1V0E5D7	Staphylococcus_phage	100.0	1.0e-166
WP_000700565.1|2148467_2150411_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	99.1	0.0e+00
WP_001205732.1|2150419_2150683_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291489.1|2150691_2150952_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000066020.1|2151044_2151206_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120197.1|2151202_2151523_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2151581_2152214_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2152228_2152369_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000388066.1|2152399_2152594_-	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	100.0	1.5e-19
WP_001148618.1|2152610_2153363_-	phage antirepressor KilAC domain-containing protein	NA	A0A1X9H0A0	Staphylococcus_phage	100.0	8.7e-140
WP_000351243.1|2153419_2153959_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_000435341.1|2153982_2154243_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000548578.1|2154255_2154495_-	helix-turn-helix transcriptional regulator	NA	G4KNM9	Staphylococcus_phage	100.0	2.3e-38
WP_000094093.1|2154665_2155373_+	helix-turn-helix transcriptional regulator	NA	G4KNM8	Staphylococcus_phage	100.0	7.7e-130
WP_001049399.1|2155384_2155540_+	hypothetical protein	NA	A0A2I6PDR9	Staphylococcus_phage	100.0	6.3e-21
WP_001089804.1|2155526_2155712_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705238.1|2155911_2156079_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000391618.1|2156218_2156758_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	33.1	9.0e-14
WP_000857198.1|2156930_2157968_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000595323.1|2159086_2160103_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2159164:2159182	attR	ATAATTTTTCTTCTTTTTC	NA	NA	NA	NA
WP_000791407.1|2160124_2161180_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
