assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	1	606458-606555	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3,casR	Orphan	GGCTCTTTGTCAACAGTTGGGGTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA|515aa|up_0|NC_014376.1_604854_606399_+,NA|92aa|down_0|NC_014376.1_606623_606899_+,NA|992aa|down_9|NC_014376.1_617189_620165_+	NA|399aa|up_9|NC_014376.1_593949_595146_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|216aa|up_8|NC_014376.1_595126_595774_-	pfam09551, Spore_II_R, Stage II sporulation protein R (spore_II_R)	NA|355aa|up_7|NC_014376.1_595871_596936_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|273aa|up_6|NC_014376.1_597061_597880_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|149aa|up_5|NC_014376.1_597893_598340_+	pfam09148, DUF1934, Domain of unknown function (DUF1934)	NA|407aa|up_4|NC_014376.1_598382_599603_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|282aa|up_3|NC_014376.1_599676_600522_-	cd01191, INT_C_like_2, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|287aa|up_2|NC_014376.1_600528_601389_-	cd01191, INT_C_like_2, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|571aa|up_1|NC_014376.1_601618_603331_+	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|515aa|up_0|NC_014376.1_604854_606399_+	NA	NA|92aa|down_0|NC_014376.1_606623_606899_+	NA	NA|428aa|down_1|NC_014376.1_607319_608603_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|381aa|down_2|NC_014376.1_608599_609742_+	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins	NA|263aa|down_3|NC_014376.1_609735_610524_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|241aa|down_4|NC_014376.1_610545_611268_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|379aa|down_5|NC_014376.1_611282_612419_+	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH	NA|390aa|down_6|NC_014376.1_612423_613593_+	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH	NA|780aa|down_7|NC_014376.1_613691_616031_+	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH	NA|90aa|down_8|NC_014376.1_616618_616888_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|992aa|down_9|NC_014376.1_617189_620165_+	NA
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	2	649843-650274	1	CRT	no		csa3,DEDDh,DinG,WYL,cas3,casR	Orphan	GCCGCAGGAAACAGCAATNGCCAGGGA	27	0	0	NA	NA	NA	9	9	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA|163aa|up_9|NC_014376.1_637485_637974_-,NA|73aa|up_8|NC_014376.1_638128_638347_-,NA	NA|163aa|up_9|NC_014376.1_637485_637974_-	NA	NA|73aa|up_8|NC_014376.1_638128_638347_-	NA	NA|645aa|up_7|NC_014376.1_638480_640415_+	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|313aa|up_6|NC_014376.1_640443_641382_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|398aa|up_5|NC_014376.1_641445_642639_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|356aa|up_4|NC_014376.1_642648_643716_+	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases	NA|336aa|up_3|NC_014376.1_643720_644728_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|731aa|up_2|NC_014376.1_644724_646917_+	cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	NA|330aa|up_1|NC_014376.1_646918_647908_+	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|473aa|up_0|NC_014376.1_648006_649425_+	TIGR03023, Sugar_transferase	NA|491aa|down_0|NC_014376.1_652066_653539_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|328aa|down_1|NC_014376.1_653588_654572_-	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|452aa|down_2|NC_014376.1_654887_656243_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|304aa|down_3|NC_014376.1_656389_657301_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|285aa|down_4|NC_014376.1_657300_658155_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|282aa|down_5|NC_014376.1_658164_659010_+	PRK02113, PRK02113, MBL fold metallo-hydrolase	NA|257aa|down_6|NC_014376.1_659023_659794_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|234aa|down_7|NC_014376.1_659817_660519_+	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|296aa|down_8|NC_014376.1_660642_661530_+	pfam01583, APS_kinase, Adenylylsulphate kinase	NA|568aa|down_9|NC_014376.1_661519_663223_+	cd11355, AmyAc_Sucrose_phosphorylase, Alpha amylase catalytic domain found in sucrose phosphorylase (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase)
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	3	961319-961394	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3,casR	Orphan	AGGAACGCCTTACAGGCATCCCTTT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA,NA	NA|408aa|up_9|NC_014376.1_950341_951565_+	PRK05799, PRK05799, oxygen-independent coproporphyrinogen III oxidase	NA|241aa|up_8|NC_014376.1_951674_952397_-	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|189aa|up_7|NC_014376.1_952682_953249_-	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|350aa|up_6|NC_014376.1_953518_954568_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|217aa|up_5|NC_014376.1_954579_955230_+	cd00446, GrpE, nucleotide exchange factor GrpE	NA|621aa|up_4|NC_014376.1_955298_957161_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|379aa|up_3|NC_014376.1_957294_958431_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|185aa|up_2|NC_014376.1_958470_959025_+	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]	NA|249aa|up_1|NC_014376.1_959602_960349_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|319aa|up_0|NC_014376.1_960358_961315_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|246aa|down_0|NC_014376.1_961429_962167_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|385aa|down_1|NC_014376.1_962243_963398_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|393aa|down_2|NC_014376.1_963444_964623_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|78aa|down_3|NC_014376.1_964766_965000_-	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]	NA|455aa|down_4|NC_014376.1_965152_966517_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|87aa|down_5|NC_014376.1_966597_966858_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|147aa|down_6|NC_014376.1_967119_967560_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|94aa|down_7|NC_014376.1_967549_967831_+	pfam06949, DUF1292, Protein of unknown function (DUF1292)	NA|158aa|down_8|NC_014376.1_967930_968404_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|556aa|down_9|NC_014376.1_968419_970087_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	4	1666490-1666564	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3,casR	Orphan	GGGTATCCCTTTATGCCAAAAAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA,NA|106aa|down_1|NC_014376.1_1667421_1667739_+,NA|124aa|down_2|NC_014376.1_1667937_1668309_+,NA|72aa|down_8|NC_014376.1_1674716_1674932_-	NA|142aa|up_9|NC_014376.1_1655566_1655992_+	pfam13782, SpoVAB, Stage V sporulation protein AB	NA|151aa|up_8|NC_014376.1_1656027_1656480_+	pfam03862, SpoVAC_SpoVAEB, SpoVAC/SpoVAEB sporulation membrane protein	NA|341aa|up_7|NC_014376.1_1656512_1657535_+	PRK08304, PRK08304, stage V sporulation protein AD; Validated	NA|119aa|up_6|NC_014376.1_1657617_1657974_+	pfam03862, SpoVAC_SpoVAEB, SpoVAC/SpoVAEB sporulation membrane protein	NA|896aa|up_5|NC_014376.1_1658051_1660739_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|218aa|up_4|NC_014376.1_1660901_1661555_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|614aa|up_3|NC_014376.1_1661798_1663640_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|209aa|up_2|NC_014376.1_1663843_1664470_+	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|168aa|up_1|NC_014376.1_1664698_1665202_+	pfam02572, CobA_CobO_BtuR, ATP:corrinoid adenosyltransferase BtuR/CobO/CobP	NA|295aa|up_0|NC_014376.1_1665570_1666455_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|253aa|down_0|NC_014376.1_1666586_1667345_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|106aa|down_1|NC_014376.1_1667421_1667739_+	NA	NA|124aa|down_2|NC_014376.1_1667937_1668309_+	NA	NA|236aa|down_3|NC_014376.1_1668455_1669163_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|481aa|down_4|NC_014376.1_1669239_1670682_+	PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional	NA|477aa|down_5|NC_014376.1_1670817_1672248_+	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2	NA|298aa|down_6|NC_014376.1_1672325_1673219_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|426aa|down_7|NC_014376.1_1673320_1674598_+	pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase	NA|72aa|down_8|NC_014376.1_1674716_1674932_-	NA	NA|382aa|down_9|NC_014376.1_1675113_1676259_+	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only]
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	5	2198107-2198180	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3,casR	Orphan	TTTTTGGACATAAAGGGATGCCCC	24	1	1	2198131-2198156	NC_014376.1_2411606-2411581	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA|140aa|up_8|NC_014376.1_2189782_2190202_-,NA	NA|480aa|up_9|NC_014376.1_2188160_2189600_-	pfam12700, HlyD_2, HlyD family secretion protein	NA|140aa|up_8|NC_014376.1_2189782_2190202_-	NA	NA|323aa|up_7|NC_014376.1_2190291_2191260_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|132aa|up_6|NC_014376.1_2191274_2191670_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|375aa|up_5|NC_014376.1_2191687_2192812_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|93aa|up_4|NC_014376.1_2192814_2193093_-	PRK13987, PRK13987, cell division topological specificity factor MinE; Provisional	NA|264aa|up_3|NC_014376.1_2193104_2193896_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|222aa|up_2|NC_014376.1_2194015_2194681_-	PRK00513, minC, septum formation inhibitor; Reviewed	NA|955aa|up_1|NC_014376.1_2194701_2197566_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|173aa|up_0|NC_014376.1_2197558_2198077_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|306aa|down_0|NC_014376.1_2198194_2199112_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|232aa|down_1|NC_014376.1_2199112_2199808_-	PRK00024, PRK00024, DNA repair protein RadC	NA|84aa|down_2|NC_014376.1_2199910_2200162_-	pfam14209, DUF4321, Domain of unknown function (DUF4321)	NA|427aa|down_3|NC_014376.1_2200327_2201608_-	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|319aa|down_4|NC_014376.1_2201604_2202561_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|640aa|down_5|NC_014376.1_2202560_2204480_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|885aa|down_6|NC_014376.1_2204651_2207306_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|483aa|down_7|NC_014376.1_2207479_2208928_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|271aa|down_8|NC_014376.1_2209043_2209856_-	pfam06691, DUF1189, Protein of unknown function (DUF1189)	NA|477aa|down_9|NC_014376.1_2210172_2211603_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	6	3328328-3328442	5	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,DinG,WYL,cas3,casR	Unclear	CATTCGCCGTTTGCGCCTACGGGCAGGCTCGTC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA|60aa|up_6|NC_014376.1_3320495_3320675_-,NA|71aa|up_1|NC_014376.1_3325742_3325955_+,NA	NA|337aa|up_9|NC_014376.1_3317046_3318057_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|549aa|up_8|NC_014376.1_3318053_3319700_-	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|173aa|up_7|NC_014376.1_3319960_3320479_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|60aa|up_6|NC_014376.1_3320495_3320675_-	NA	DEDDh|223aa|up_5|NC_014376.1_3320770_3321439_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|208aa|up_4|NC_014376.1_3321613_3322237_-	pfam00912, Transgly, Transglycosylase	NA|296aa|up_3|NC_014376.1_3323953_3324841_+	cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX	NA|174aa|up_2|NC_014376.1_3325038_3325560_-	smart00850, LytTR, LytTr DNA-binding domain	NA|71aa|up_1|NC_014376.1_3325742_3325955_+	NA	NA|680aa|up_0|NC_014376.1_3326020_3328060_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|283aa|down_0|NC_014376.1_3328460_3329309_-	PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional	NA|352aa|down_1|NC_014376.1_3329325_3330381_-	PRK03906, PRK03906, mannonate dehydratase; Provisional	NA|293aa|down_2|NC_014376.1_3330556_3331435_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|113aa|down_3|NC_014376.1_3331447_3331786_-	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]	NA|236aa|down_4|NC_014376.1_3331782_3332490_-	TIGR00346, Uncharacterized_membrane_protein_HI_1738, 4-azaleucine resistance probable transporter AzlC	NA|303aa|down_5|NC_014376.1_3332683_3333592_+	COG1313, PflX, Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]	NA|730aa|down_6|NC_014376.1_3334291_3336481_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|626aa|down_7|NC_014376.1_3336608_3338486_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|168aa|down_8|NC_014376.1_3338509_3339013_-	pfam12641, Flavodoxin_3, Flavodoxin domain	NA|426aa|down_9|NC_014376.1_3339204_3340482_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	7	3788035-3788159	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3,casR	Orphan	CTCTATGGTCAGGCTATCAGCATACGCGCCGTAGCTTT	38	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA|72aa|up_6|NC_014376.1_3778487_3778703_-,NA|141aa|down_4|NC_014376.1_3792596_3793019_-,NA|135aa|down_5|NC_014376.1_3793069_3793474_-,NA|668aa|down_6|NC_014376.1_3793646_3795650_-	DinG|677aa|up_9|NC_014376.1_3767315_3769346_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|165aa|up_8|NC_014376.1_3770097_3770592_-	pfam08281, Sigma70_r4_2, Sigma-70, region 4	NA|2458aa|up_7|NC_014376.1_3771095_3778469_-	smart00257, LysM, Lysin motif	NA|72aa|up_6|NC_014376.1_3778487_3778703_-	NA	NA|659aa|up_5|NC_014376.1_3778787_3780764_-	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|429aa|up_4|NC_014376.1_3780927_3782214_-	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|246aa|up_3|NC_014376.1_3782210_3782948_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|61aa|up_2|NC_014376.1_3782953_3783136_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|169aa|up_1|NC_014376.1_3783397_3783904_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|746aa|up_0|NC_014376.1_3784403_3786641_-	pfam09479, Flg_new, Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA|60aa|down_0|NC_014376.1_3789095_3789275_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|303aa|down_1|NC_014376.1_3789312_3790221_-	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|562aa|down_2|NC_014376.1_3790245_3791931_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|185aa|down_3|NC_014376.1_3791939_3792494_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|141aa|down_4|NC_014376.1_3792596_3793019_-	NA	NA|135aa|down_5|NC_014376.1_3793069_3793474_-	NA	NA|668aa|down_6|NC_014376.1_3793646_3795650_-	NA	NA|97aa|down_7|NC_014376.1_3795948_3796239_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|243aa|down_8|NC_014376.1_3796259_3796988_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|424aa|down_9|NC_014376.1_3796989_3798261_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	8	3805505-3805773	1	PILER-CR	no		csa3,DEDDh,DinG,WYL,cas3,casR	Orphan	CCCGCCACGCCGCCGACATA	20	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA|141aa|up_6|NC_014376.1_3792596_3793019_-,NA|135aa|up_5|NC_014376.1_3793069_3793474_-,NA|668aa|up_4|NC_014376.1_3793646_3795650_-,NA|335aa|down_6|NC_014376.1_3822155_3823160_-,NA|232aa|down_9|NC_014376.1_3825829_3826525_-	NA|303aa|up_9|NC_014376.1_3789312_3790221_-	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|562aa|up_8|NC_014376.1_3790245_3791931_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|185aa|up_7|NC_014376.1_3791939_3792494_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|141aa|up_6|NC_014376.1_3792596_3793019_-	NA	NA|135aa|up_5|NC_014376.1_3793069_3793474_-	NA	NA|668aa|up_4|NC_014376.1_3793646_3795650_-	NA	NA|97aa|up_3|NC_014376.1_3795948_3796239_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|243aa|up_2|NC_014376.1_3796259_3796988_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|424aa|up_1|NC_014376.1_3796989_3798261_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|165aa|up_0|NC_014376.1_3798538_3799033_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|127aa|down_0|NC_014376.1_3807468_3807849_-	pfam00072, Response_reg, Response regulator receiver domain	NA|242aa|down_1|NC_014376.1_3808061_3808787_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|729aa|down_2|NC_014376.1_3808783_3810970_+	pfam09073, BUD22, BUD22	NA|645aa|down_3|NC_014376.1_3810962_3812897_+	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|2335aa|down_4|NC_014376.1_3813558_3820563_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|210aa|down_5|NC_014376.1_3820792_3821422_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|335aa|down_6|NC_014376.1_3822155_3823160_-	NA	NA|275aa|down_7|NC_014376.1_3823174_3823999_-	pfam13529, Peptidase_C39_2, Peptidase_C39 like family	NA|613aa|down_8|NC_014376.1_3823998_3825837_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|232aa|down_9|NC_014376.1_3825829_3826525_-	NA
GCF_000144625.1_ASM14462v1	NC_014376	[Clostridium] saccharolyticum WM1, complete sequence	9	4257716-4257858	7	CRISPRCasFinder	no		csa3,DEDDh,DinG,WYL,cas3,casR	Orphan	AGTGAAGATAAAAGGGCTGTTTTCCAGCCCGTTCATCCGTTTATGAAA	48	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,WYL,cas3,casR	NA|50aa|up_7|NC_014376.1_4249068_4249218_+,NA|80aa|up_6|NC_014376.1_4249246_4249486_+,NA	NA|832aa|up_9|NC_014376.1_4243498_4245994_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|730aa|up_8|NC_014376.1_4246510_4248700_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|50aa|up_7|NC_014376.1_4249068_4249218_+	NA	NA|80aa|up_6|NC_014376.1_4249246_4249486_+	NA	NA|338aa|up_5|NC_014376.1_4249562_4250576_-	pfam14879, DUF4489, Domain of unknown function (DUF4489)	NA|472aa|up_4|NC_014376.1_4251097_4252513_-	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|237aa|up_3|NC_014376.1_4253146_4253857_+	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|237aa|up_2|NC_014376.1_4253939_4254650_+	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|336aa|up_1|NC_014376.1_4255413_4256421_+	PRK10162, PRK10162, acetyl esterase	NA|347aa|up_0|NC_014376.1_4256529_4257570_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|429aa|down_0|NC_014376.1_4257939_4259226_-	cd06174, MFS, Major Facilitator Superfamily	NA|538aa|down_1|NC_014376.1_4259330_4260944_-	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|381aa|down_2|NC_014376.1_4261152_4262295_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|379aa|down_3|NC_014376.1_4262330_4263467_-	PRK12341, PRK12341, acyl-CoA dehydrogenase	NA|258aa|down_4|NC_014376.1_4263528_4264302_-	PRK06494, PRK06494, enoyl-CoA hydratase; Provisional	NA|216aa|down_5|NC_014376.1_4264318_4264966_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|405aa|down_6|NC_014376.1_4264999_4266214_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|395aa|down_7|NC_014376.1_4266245_4267430_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|254aa|down_8|NC_014376.1_4267792_4268554_+	PRK12342, PRK12342, electron transfer flavoprotein	NA|309aa|down_9|NC_014376.1_4268583_4269510_+	PRK11916, PRK11916, electron transfer flavoprotein subunit alpha
