The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	14435	59877	2530294	tRNA,bacteriocin,protease,transposase,integrase	Lactococcus_phage(81.48%)	51	NA	NA
WP_003132167.1|14435_15002_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_011834129.1|15002_18545_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_011675089.1|18861_19131_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_011675090.1|19161_19536_+	septum formation initiator family protein	NA	NA	NA	NA	NA
WP_011675091.1|19535_19859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014734879.1|19999_21337_+	serine hydrolase	NA	NA	NA	NA	NA
WP_011834131.1|21333_22602_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_011834132.1|22582_23134_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	29.7	1.4e-09
WP_011834133.1|23339_25427_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	G8DDJ2	Micromonas_pusilla_virus	49.2	1.6e-106
WP_011834134.1|26493_28317_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_011834135.1|28376_30311_+	transcription antiterminator	NA	NA	NA	NA	NA
WP_011834136.1|30357_30789_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_011834137.1|30937_32104_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_011834138.1|32973_33297_-	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	82.2	1.2e-42
WP_041931235.1|33397_33730_-	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	75.0	3.4e-40
WP_011834140.1|33805_34108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834141.1|34424_35006_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	89.6	7.0e-89
WP_011834142.1|35241_36870_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	98.5	0.0e+00
WP_011834143.1|36880_37675_-	bifunctional DNA primase/polymerase	NA	Q9AZI6	Lactococcus_phage	91.7	2.8e-144
WP_011834144.1|37671_38007_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	95.4	4.2e-54
WP_011834146.1|38254_38494_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	92.4	2.2e-36
WP_011834147.1|38535_38817_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	95.7	1.2e-46
WP_011834148.1|38828_39254_-	hypothetical protein	NA	Q9AZF1	Lactococcus_phage	92.2	2.8e-71
WP_011834149.1|39258_39453_-	DUF1655 domain-containing protein	NA	Q9AZF2	Lactococcus_phage	93.8	5.7e-27
WP_011834150.1|39568_39754_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	42.6	1.2e-05
WP_011834151.1|39836_40163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834152.1|40518_40734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834153.1|40859_41282_+	helix-turn-helix domain-containing protein	NA	A5GZ65	Lactococcus_phage	59.4	2.8e-39
WP_011834154.1|41311_41866_+	hypothetical protein	NA	Q9AZJ8	Lactococcus_phage	92.4	2.4e-102
WP_011834155.1|41976_42207_+	hypothetical protein	NA	Q9AZK0	Lactococcus_phage	85.5	1.2e-15
WP_011834156.1|42279_42474_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	98.4	1.0e-28
WP_014734881.1|42726_42984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834157.1|43097_44423_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_011834158.1|44504_44711_+	hypothetical protein	NA	Q9AZK3	Lactococcus_phage	64.7	6.7e-18
WP_011834159.1|45200_45443_+	hypothetical protein	NA	Q9AZK2	Lactococcus_phage	98.8	5.1e-33
WP_010905058.1|45578_45803_+	hypothetical protein	NA	Q9AZK3	Lactococcus_phage	100.0	4.5e-36
WP_003331415.1|46466_47690_+|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_003331414.1|47701_48460_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_011834160.1|48561_48888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010905061.1|49621_49786_+|bacteriocin	bacteriocin	bacteriocin	Q9AZK6	Lactococcus_phage	100.0	7.9e-22
WP_010905062.1|49907_50213_+|bacteriocin	bacteriocin immunity protein	bacteriocin	Q9AZK7	Lactococcus_phage	100.0	8.3e-49
WP_011834162.1|50462_51647_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	99.5	3.6e-225
WP_014734884.1|52155_52869_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011834164.1|53630_53996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834165.1|54400_54892_+	hypothetical protein	NA	A0A1S5SAH9	Streptococcus_phage	27.7	2.4e-05
WP_014734885.1|54929_55283_+	DUF1648 domain-containing protein	NA	NA	NA	NA	NA
WP_011675106.1|55404_55563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041931237.1|56003_56453_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_050750505.1|56531_56777_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_011834168.1|56869_58492_-	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
WP_003138385.1|58701_59877_-|transposase	IS256-like element IS905 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	32.3	2.5e-32
>prophage 2
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	401441	413597	2530294	tRNA	Streptococcus_phage(30.0%)	14	NA	NA
WP_011675460.1|401441_401759_+	thioredoxin family protein	NA	A0A0K2FIM3	Achromobacter_phage	31.9	9.0e-06
WP_011834456.1|401864_402491_+|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_011834457.1|402652_403993_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011834458.1|404083_404473_+	single-stranded DNA-binding protein	NA	A0A2I2MUI5	uncultured_Caudovirales_phage	42.3	2.0e-23
WP_011834459.1|404591_404876_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	1.1e-13
WP_011834460.1|404962_406591_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.4	5.5e-155
WP_011675466.1|406640_407453_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	1.5e-33
WP_173249647.1|407643_408999_-	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	32.9	1.4e-31
WP_003131580.1|409063_409765_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_011834462.1|409942_410578_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	65.5	4.5e-73
WP_011834463.1|410710_411571_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	45.2	1.1e-64
WP_011834464.1|411620_412403_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_011834465.1|412395_412722_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_011834466.1|412721_413597_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	66.4	7.1e-101
>prophage 3
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	580465	634879	2530294	integrase,tRNA,transposase,protease	Lactococcus_phage(35.0%)	46	608217:608276	613681:613788
WP_011675765.1|580465_581131_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	29.8	2.3e-19
WP_011834608.1|581261_582146_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_011834609.1|582291_582960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011675768.1|583124_584027_+	SPFH domain-containing protein	NA	A0A1V0SL90	Klosneuvirus	35.2	1.8e-35
WP_011834610.1|584275_585292_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	42.9	4.0e-71
WP_011834611.1|585512_586004_-	hypothetical protein	NA	Q9AZF8	Lactococcus_phage	93.3	3.6e-78
WP_011834612.1|586279_586489_-	hypothetical protein	NA	Q9AZF6	Lactococcus_phage	83.6	2.3e-26
WP_011834613.1|586556_586808_-	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	69.6	3.8e-23
WP_162467000.1|586773_587064_-	hypothetical protein	NA	Q9G0E8	Lactococcus_phage	81.8	1.2e-12
WP_014734944.1|587044_587221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834615.1|587514_589122_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_161769936.1|589045_589978_+	glycosyltransferase family 2 protein	NA	V9QJB1	Oenococcus_phage	49.7	6.6e-81
WP_011834617.1|590244_590736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834618.1|590748_591123_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	80.6	7.1e-50
WP_011834619.1|591467_591815_-	XRE family transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	76.3	3.1e-44
WP_011834620.1|592580_593504_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_014734945.1|593496_594198_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014734946.1|594370_596599_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.3	2.3e-79
WP_011834623.1|596722_597235_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.0	5.3e-32
WP_011834624.1|597450_598017_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_041931175.1|598152_599793_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_011834626.1|599853_600324_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_101928132.1|601863_603010_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	41.0	2.3e-46
WP_011834627.1|603241_603697_+	CtsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834628.1|603686_606137_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	33.9	2.4e-122
WP_011834629.1|606271_606829_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010905473.1|607016_608318_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	87.6	4.0e-217
608217:608276	attL	GACCGTATGGCTAAATACAACCAATTGCTTCGTATTGAAGACCAATTGGCTGAAGTTGCT	NA	NA	NA	NA
WP_011834630.1|608406_609342_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142F1N9	Bacillus_phage	27.5	4.0e-25
WP_011834631.1|609468_610101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102032783.1|611480_612592_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	4.7e-49
WP_011834633.1|612671_613352_+	abortive infection protein	NA	NA	NA	NA	NA
WP_011834634.1|613885_614557_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.9e-29
613681:613788	attR	GACCGTATGGCTAAATACAACCAATTGCTTCGTATTGAAGACCAATTGGCTGAAGTTGCTCAATACAAAGGTCTTAAAGCATTCTACAACCTTAAAAAATAAGGTTTA	NA	NA	NA	NA
WP_011834635.1|614558_615632_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011834636.1|615643_616213_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834637.1|616402_617926_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_011834638.1|618119_619037_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_011834639.1|619296_621660_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	31.6	4.7e-107
WP_011834640.1|621788_622448_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_011834641.1|622450_623668_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_003129585.1|623664_623811_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_011834642.1|624187_625450_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_011834643.1|625554_628968_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_011834644.1|629093_630419_+	citrate/2-methylcitrate synthase	NA	NA	NA	NA	NA
WP_011834645.1|630415_632962_+	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_011834646.1|632981_634220_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_011834647.1|634279_634879_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	52.6	7.1e-52
>prophage 4
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	643981	700633	2530294	transposase,bacteriocin	Staphylococcus_phage(16.67%)	53	NA	NA
WP_102032784.1|643981_645093_-|transposase	IS3-like element IS981 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.4	2.8e-49
WP_102032798.1|645147_645948_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011834657.1|646034_647384_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_011834658.1|647599_647872_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_011834662.1|650474_651365_-|transposase	IS982-like element ISLla2 family transposase	transposase	NA	NA	NA	NA
WP_041931256.1|651814_654892_+	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_014734957.1|654891_656511_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	49.7	3.2e-123
WP_063283236.1|657094_657727_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	29.6	8.1e-14
WP_003131454.1|657912_658863_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_011834666.1|660763_661411_+	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
WP_011834667.1|661601_662798_-	amidohydrolase	NA	NA	NA	NA	NA
WP_011834668.1|663862_665119_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_101812836.1|665236_665380_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_011834669.1|665946_666264_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011834671.1|666740_667043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834672.1|667039_667216_-|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_101913470.1|667352_667580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834674.1|667778_668396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834675.1|668672_669353_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	82.7	4.2e-109
WP_011834676.1|669681_669921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834677.1|670080_670578_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011834678.1|670865_671078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834679.1|672331_672523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003140242.1|672574_672751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834680.1|672897_673383_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003331415.1|673631_674855_+|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_003331414.1|674866_675625_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_011834681.1|677386_677533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834682.1|677939_678221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834683.1|678804_678972_+|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011834671.1|678978_679281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834685.1|679532_681395_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.0	4.7e-102
WP_011834687.1|682100_682328_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_031297113.1|682376_682922_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_011834689.1|683007_683697_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834692.1|684373_685390_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppD	NA	G9BWD6	Planktothrix_phage	32.3	3.8e-21
WP_010906164.1|685386_686346_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	NA	G3M9Y6	Bacillus_virus	31.1	1.6e-13
WP_010906163.1|686326_687286_+	murein tripeptide/oligopeptide ABC transporter permease OppB	NA	NA	NA	NA	NA
WP_003140250.1|687295_688180_+	murein tripeptide/oligopeptide ABC transporter permease OppC	NA	NA	NA	NA	NA
WP_011834693.1|688289_690092_+	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011834694.1|690216_692100_+	endopeptidase PepO	NA	E3T4I7	Cafeteria_roenbergensis_virus	31.1	1.8e-72
WP_011834695.1|692402_693722_+|transposase	IS4-like element IS1675 family transposase	transposase	NA	NA	NA	NA
WP_011834696.1|694149_694353_+|bacteriocin	lactococcin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011834697.1|694345_694669_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_011834698.1|695077_695359_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_010890674.1|695529_695832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834700.1|695824_696100_-	DUF2089 family protein	NA	NA	NA	NA	NA
WP_041931261.1|696356_696674_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011834702.1|696670_697498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834703.1|697732_698287_+	recombinase family protein	NA	A0A286S1P7	Klebsiella_phage	49.7	1.8e-41
WP_011834704.1|698630_699236_-	AbiV family abortive infection protein	NA	NA	NA	NA	NA
WP_011834705.1|699248_699428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_102032785.1|699524_700633_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.5	3.3e-34
>prophage 5
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	776264	822742	2530294	tail,protease,capsid,holin,bacteriocin,portal,transposase,head,terminase,integrase	Lactococcus_phage(98.31%)	66	767234:767250	821775:821791
767234:767250	attL	TTTTTAATATAAAAAAC	NA	NA	NA	NA
WP_014734979.1|776264_777743_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.1	5.9e-15
WP_041168731.1|777745_778687_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_011834767.1|778698_779673_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011834768.1|779863_780997_-|integrase	site-specific integrase	integrase	A0A059NT56	Lactococcus_phage	100.0	1.2e-204
WP_011834769.1|781122_781749_-	DUF308 domain-containing protein	NA	A0A059NT54	Lactococcus_phage	100.0	1.2e-70
WP_011834770.1|781805_782243_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059NT76	Lactococcus_phage	100.0	6.3e-82
WP_011834771.1|782239_782737_-	helix-turn-helix transcriptional regulator	NA	A0A059NT51	Lactococcus_phage	100.0	2.2e-83
WP_011834772.1|783138_783948_-	TIGR02391 family protein	NA	A0A059NT45	Lactococcus_phage	100.0	2.8e-152
WP_003129361.1|784101_784353_+	helix-turn-helix transcriptional regulator	NA	A0A059NT65	Lactococcus_phage	100.0	1.9e-38
WP_011834773.1|784367_784586_+	hypothetical protein	NA	A0A059NT62	Lactococcus_phage	100.0	8.6e-32
WP_011834774.1|784595_785309_+	phage antirepressor Ant	NA	A0A059NT90	Lactococcus_phage	100.0	7.0e-131
WP_011834775.1|785321_785558_+	helix-turn-helix domain-containing protein	NA	A0A059NT59	Lactococcus_phage	100.0	4.3e-37
WP_011834776.1|785711_785945_+	hypothetical protein	NA	A0A059NT46	Lactococcus_phage	100.0	1.8e-35
WP_011834777.1|785899_786178_-	hypothetical protein	NA	A0A059NT68	Lactococcus_phage	100.0	1.1e-47
WP_002819828.1|786283_786532_+	hypothetical protein	NA	A0A059NT64	Lactococcus_phage	100.0	1.0e-36
WP_011834778.1|786528_786705_+	putative transcriptional regulator	NA	A0A059NT92	Lactococcus_phage	100.0	2.2e-25
WP_011834779.1|786809_787328_+	host-nuclease inhibitor Gam family protein	NA	A0A059NT60	Lactococcus_phage	100.0	6.9e-88
WP_011834780.1|787336_788056_+	AAA family ATPase	NA	A0A059NT47	Lactococcus_phage	100.0	4.4e-133
WP_011834781.1|788055_788559_+	hypothetical protein	NA	A0A059NT72	Lactococcus_phage	100.0	9.1e-93
WP_011834782.1|788694_789534_+	phage replisome organiser protein	NA	A0A059NT67	Lactococcus_phage	100.0	1.1e-132
WP_011834783.1|789543_790428_+	ATP-binding protein	NA	A0A059NT94	Lactococcus_phage	100.0	1.6e-164
WP_011834784.1|790424_790589_+	hypothetical protein	NA	A0A059NT61	Lactococcus_phage	100.0	1.9e-23
WP_014734980.1|790578_790998_+	hypothetical protein	NA	A0A059NT48	Lactococcus_phage	100.0	4.6e-74
WP_011834786.1|790998_791238_+	DUF1031 domain-containing protein	NA	A0A059NT75	Lactococcus_phage	100.0	1.4e-38
WP_011834787.1|791343_791868_+	hypothetical protein	NA	A0A059NT70	Lactococcus_phage	100.0	5.5e-93
WP_011676933.1|791881_792088_+	DUF1125 domain-containing protein	NA	A0A1P8BL00	Lactococcus_phage	100.0	2.4e-31
WP_011834788.1|792080_792629_+	DUF1642 domain-containing protein	NA	A0A059NT63	Lactococcus_phage	100.0	2.2e-100
WP_011834789.1|792625_793045_+	dUTP diphosphatase	NA	A0A059NT49	Lactococcus_phage	100.0	3.9e-73
WP_011834790.1|793047_793386_+	hypothetical protein	NA	A0A059NT79	Lactococcus_phage	100.0	8.6e-55
WP_011834791.1|793382_794063_+	hypothetical protein	NA	A0A059NT73	Lactococcus_phage	100.0	1.3e-129
WP_011834792.1|794142_794361_+	hypothetical protein	NA	A0A059NT96	Lactococcus_phage	100.0	2.9e-35
WP_011834793.1|794357_794531_+	DUF1660 domain-containing protein	NA	A0A059NT66	Lactococcus_phage	100.0	6.4e-30
WP_003131928.1|794885_795311_+	DUF722 domain-containing protein	NA	A0A059NT50	Lactococcus_phage	100.0	1.3e-76
WP_003331415.1|795487_796711_+|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_003331414.1|796722_797481_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_011834794.1|797861_798374_+|terminase	terminase small subunit	terminase	A0A059NT97	Lactococcus_phage	100.0	6.0e-84
WP_011834795.1|798363_799599_+|terminase	PBSX family phage terminase large subunit	terminase	A0A059NT69	Lactococcus_phage	100.0	2.6e-242
WP_011834796.1|799608_801117_+|portal	phage portal protein	portal	A0A059NT52	Lactococcus_phage	100.0	3.9e-264
WP_014734981.1|801073_801238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102032787.1|801267_801510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834797.1|801506_801794_+|protease	ribosomal-processing cysteine protease Prp	protease	A0A059NT85	Lactococcus_phage	100.0	1.7e-48
WP_011834798.1|801799_802897_+|capsid	minor capsid protein	capsid	A0A059NT80	Lactococcus_phage	100.0	4.3e-204
WP_011834799.1|802929_803460_+	hypothetical protein	NA	A0A059NT98	Lactococcus_phage	100.0	4.9e-97
WP_011834800.1|803519_803678_+	hypothetical protein	NA	A0A059NT71	Lactococcus_phage	100.0	2.6e-22
WP_011834801.1|803674_803947_-	DUF3892 domain-containing protein	NA	A0A059NT53	Lactococcus_phage	100.0	1.4e-39
WP_011834802.1|804123_804750_+	DUF4355 domain-containing protein	NA	A0A059NT87	Lactococcus_phage	100.0	2.7e-78
WP_011834803.1|804761_805880_+	Ig-like domain-containing protein	NA	A0A059NT82	Lactococcus_phage	100.0	1.1e-175
WP_011834804.1|805900_806233_+|head,tail	phage head-tail connector protein	head,tail	A0A059NT99	Lactococcus_phage	100.0	1.3e-55
WP_011834805.1|806213_806567_+	hypothetical protein	NA	A0A059NT74	Lactococcus_phage	100.0	4.9e-61
WP_011676912.1|806550_807099_+	hypothetical protein	NA	A0A059NT55	Lactococcus_phage	100.0	6.0e-98
WP_011834806.1|807098_807461_+	hypothetical protein	NA	A0A059NT89	Lactococcus_phage	100.0	1.0e-61
WP_011834807.1|807473_807887_+|tail	major tail protein	tail	A0A059NT84	Lactococcus_phage	100.0	1.6e-71
WP_011834808.1|807963_808374_+	hypothetical protein	NA	A0A059NTA0	Lactococcus_phage	100.0	1.3e-68
WP_014734984.1|808397_808769_+	hypothetical protein	NA	A0A059NT78	Lactococcus_phage	100.0	1.1e-47
WP_011834810.1|808800_813501_+|tail	tail protein	tail	A0A059NT57	Lactococcus_phage	100.0	0.0e+00
WP_011834811.1|813512_813878_+	hypothetical protein	NA	A0A059NT91	Lactococcus_phage	100.0	1.4e-63
WP_011834812.1|813889_816427_+	hypothetical protein	NA	A0A059NT86	Lactococcus_phage	100.0	0.0e+00
WP_011676905.1|816423_816561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011834813.1|816560_818054_+	hypothetical protein	NA	A0A059NTA1	Lactococcus_phage	100.0	2.2e-280
WP_011834814.1|818134_818440_+	hypothetical protein	NA	A0A059NT81	Lactococcus_phage	100.0	2.8e-52
WP_011834815.1|818426_818651_+|holin	holin	holin	A0A059NT58	Lactococcus_phage	100.0	1.1e-34
WP_011834816.1|818647_819937_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A059NT93	Lactococcus_phage	100.0	3.3e-248
WP_011834817.1|820118_821078_+	Abi family protein	NA	A0A059NT88	Lactococcus_phage	100.0	2.2e-180
WP_173249648.1|821349_821505_+|holin	bacteriophage holin	holin	A0A059NTA2	Lactococcus_phage	98.0	2.2e-21
WP_011834819.1|822009_822432_+|bacteriocin	garvicin Q family class II bacteriocin	bacteriocin	NA	NA	NA	NA
821775:821791	attR	GTTTTTTATATTAAAAA	NA	NA	NA	NA
WP_011834820.1|822436_822742_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 6
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	946657	955598	2530294	transposase	Synechococcus_phage(33.33%)	6	NA	NA
WP_102032788.1|946657_948050_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	45.0	5.9e-57
WP_011834921.1|948431_949238_+	hypothetical protein	NA	A0A1P8BMN5	Lactococcus_phage	47.6	2.2e-11
WP_011834922.1|949425_952029_+	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	32.7	1.4e-123
WP_011834923.1|952212_953235_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.5	2.4e-60
WP_011676469.1|953263_953812_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	32.0	1.5e-19
WP_014734995.1|954002_955598_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	34.1	6.6e-12
>prophage 7
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	1027015	1035810	2530294	transposase	Bacillus_phage(33.33%)	8	NA	NA
WP_011834981.1|1027015_1028569_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	37.8	3.5e-34
WP_011676390.1|1028558_1029269_-	response regulator transcription factor	NA	A0A1V0SGR9	Hokovirus	30.1	5.3e-06
WP_011676389.1|1029452_1029788_+	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_011834982.1|1030574_1031105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164845598.1|1031215_1032599_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	41.8	1.1e-55
WP_102032790.1|1032673_1033775_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.4	1.7e-38
WP_003331414.1|1033816_1034575_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_011834984.1|1034586_1035810_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	99.8	2.4e-232
>prophage 8
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	1225797	1232278	2530294	transposase	Lactococcus_phage(83.33%)	10	NA	NA
WP_011835138.1|1225797_1226655_+	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	30.6	1.2e-28
WP_011835139.1|1227402_1227603_+	hypothetical protein	NA	Q9AZK6	Lactococcus_phage	55.8	2.6e-06
WP_003132324.1|1227733_1227934_+	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	50.8	8.2e-13
WP_011835124.1|1228211_1228412_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	93.9	2.4e-28
WP_011835140.1|1228927_1229167_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011835141.1|1229196_1229757_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_011835142.1|1229766_1229955_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_011835143.1|1229975_1230236_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_003331414.1|1230284_1231043_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_003331415.1|1231054_1232278_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
>prophage 9
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	1506723	1520405	2530294		Bacillus_virus(25.0%)	12	NA	NA
WP_011835376.1|1506723_1509198_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.8	1.8e-96
WP_011835377.1|1509522_1509972_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011835378.1|1509968_1510802_-	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	1.2e-20
WP_014735065.1|1510794_1511331_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_011835380.1|1511437_1513372_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.2	5.4e-125
WP_011835381.1|1513650_1514292_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_011675987.1|1514465_1514684_+	redoxin NrdH	NA	C3U2K9	Lactococcus_phage	47.6	5.8e-12
WP_011835382.1|1514685_1515108_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	36.4	2.3e-12
WP_011835383.1|1515244_1517413_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.7	5.6e-256
WP_011675984.1|1517697_1518675_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	65.7	6.0e-117
WP_011835384.1|1518784_1519720_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011835385.1|1519712_1520405_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.8	1.2e-31
>prophage 10
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	2019552	2111342	2530294	tRNA,tail,holin,capsid,protease,head,portal,transposase,terminase,integrase	Lactococcus_phage(73.77%)	110	2064138:2064160	2108316:2108338
WP_011835755.1|2019552_2021430_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_011676860.1|2021814_2022378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835756.1|2022510_2022879_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_014735129.1|2022992_2023394_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_011835758.1|2023386_2024733_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2L2DK39	Acanthamoeba_polyphaga_mimivirus	30.9	8.8e-50
WP_011676864.1|2024745_2025339_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_011835759.1|2025352_2025952_-	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_011835760.1|2026057_2026828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835761.1|2027095_2029396_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_011835762.1|2029676_2030822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835763.1|2031186_2032152_+	ribose-phosphate diphosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	1.8e-36
WP_011676870.1|2032256_2032688_-	universal stress protein	NA	NA	NA	NA	NA
WP_041931211.1|2032987_2034112_+	cysteine desulfurase	NA	H7BUW1	unidentified_phage	37.1	3.1e-32
WP_011835765.1|2034137_2034482_+	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_003132374.1|2034570_2035758_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.4	2.0e-34
WP_011835766.1|2036001_2036184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835767.1|2036242_2036359_+	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_011835768.1|2036418_2039217_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	26.2	8.7e-84
WP_011835770.1|2039663_2040599_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_014735130.1|2040655_2041447_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_011676877.1|2041443_2041719_-	YggT family protein	NA	NA	NA	NA	NA
WP_011835772.1|2041718_2042309_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_011835773.1|2042342_2043020_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_011835774.1|2043016_2044276_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_011835775.1|2044305_2045676_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_011835776.1|2045837_2046707_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.3	1.7e-14
WP_011835777.1|2046823_2047552_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	A0A2D1A6G0	Rhodococcus_phage	27.7	6.1e-05
WP_011835778.1|2047715_2048816_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_011835779.1|2048953_2049799_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	33.7	4.0e-32
WP_011835780.1|2049810_2051136_-	MFS transporter	NA	NA	NA	NA	NA
WP_011835781.1|2051250_2052129_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011835782.1|2052144_2052549_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011676889.1|2052628_2053939_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	31.7	1.5e-62
WP_011835784.1|2054067_2054742_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_011835785.1|2054759_2055263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835787.1|2055399_2056080_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_011676893.1|2056107_2056386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835788.1|2056378_2056963_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_011835789.1|2057063_2058440_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	35.7	1.2e-30
WP_011835790.1|2058660_2059452_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	33.2	1.1e-31
WP_010906184.1|2059535_2059805_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_011835791.1|2059975_2061853_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	32.4	9.8e-23
WP_011835792.1|2061852_2062629_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_011835793.1|2062751_2064026_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
2064138:2064160	attL	AACGTAACTAAAAACGTAACTAA	NA	NA	NA	NA
WP_011835794.1|2065233_2066091_-	lysozyme	NA	Q8LTJ6	Lactococcus_phage	88.6	2.8e-102
WP_011835795.1|2066092_2066554_-|holin	phage holin	holin	Q8LTJ7	Lactococcus_phage	89.7	1.2e-46
WP_011835796.1|2066569_2066917_-	hypothetical protein	NA	Q38132	Lactococcus_phage	99.1	7.5e-54
WP_011835797.1|2066929_2067166_-	hypothetical protein	NA	Q38320	Lactococcus_phage	93.6	3.2e-32
WP_011835798.1|2067181_2072035_-	serine/threonine protein phosphatase	NA	Q38319	Lactococcus_phage	50.3	0.0e+00
WP_050750512.1|2072031_2072976_-	hypothetical protein	NA	Q38318	Lactococcus_phage	73.7	1.6e-135
WP_011835800.1|2073037_2073685_-|tail	phage tail family protein	tail	Q38318	Lactococcus_phage	75.4	1.3e-86
WP_011835801.1|2073681_2078829_-|tail	phage tail tape measure protein	tail	Q8LTK2	Lactococcus_phage	91.5	0.0e+00
WP_011835802.1|2079051_2079468_-|tail	phage tail assembly chaperone	tail	Q8LTK3	Lactococcus_phage	98.6	3.0e-65
WP_011835803.1|2079612_2080206_-|tail	phage tail protein	tail	Q94MA4	Lactococcus_phage	100.0	8.4e-106
WP_011835804.1|2080236_2080632_-	DUF806 family protein	NA	Q9AZS3	Lactococcus_phage	99.2	5.7e-66
WP_011835805.1|2080628_2081135_-	HK97 gp10 family phage protein	NA	Q8LTK6	Lactococcus_phage	98.2	1.3e-86
WP_011835806.1|2081136_2081487_-|head	phage head closure protein	head	Q8LTK7	Lactococcus_phage	94.8	3.4e-54
WP_011835807.1|2081461_2081785_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q94MA8	Lactococcus_phage	98.1	7.7e-53
WP_011835808.1|2081985_2083200_-|capsid	phage major capsid protein	capsid	Q9AZS7	Lactococcus_phage	99.8	3.1e-219
WP_010905934.1|2083211_2083919_-|protease	Clp protease ClpP	protease	Q9AZS8	Lactococcus_phage	100.0	1.4e-120
WP_014735131.1|2083961_2085140_-|portal	phage portal protein	portal	Q77P35	Lactococcus_phage	99.2	2.0e-223
WP_011835810.1|2085136_2085346_-	DUF1056 family protein	NA	Q9AZT0	Lactococcus_phage	98.6	1.5e-28
WP_011835811.1|2085314_2086913_-|terminase	terminase large subunit	terminase	Q8LTL2	Lactococcus_phage	97.0	6.9e-304
WP_011835812.1|2088535_2088934_-|terminase	phage terminase small subunit P27 family	terminase	Q8LTL3	Lactococcus_phage	38.8	4.9e-17
WP_011835813.1|2089115_2089634_-	HNH endonuclease	NA	Q94M78	Lactococcus_phage	97.1	2.5e-98
WP_011835814.1|2089637_2089928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835815.1|2090304_2090706_-	RinA family protein	NA	Q9AZZ1	Lactococcus_phage	99.2	1.2e-68
WP_011835816.1|2090788_2090974_-	hypothetical protein	NA	Q8LTL6	Lactococcus_phage	98.3	1.6e-26
WP_011835817.1|2090970_2091279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014735134.1|2091280_2091460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003331414.1|2091710_2092469_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	100.0	5.3e-137
WP_003331415.1|2092480_2093704_-|transposase	IS21-like element IS712 family transposase	transposase	A0A059NT83	Lactococcus_phage	100.0	4.9e-233
WP_014735135.1|2093759_2093903_-	hypothetical protein	NA	Q8LTL7	Lactococcus_phage	90.0	6.9e-14
WP_011835819.1|2094263_2094473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014735136.1|2094521_2094722_-	DUF1660 domain-containing protein	NA	A0A1P8BKA6	Lactococcus_phage	84.8	2.5e-30
WP_011835820.1|2094718_2094949_-	hypothetical protein	NA	A0A1P8BMS6	Lactococcus_phage	46.2	5.7e-10
WP_011835821.1|2094967_2095306_-	DUF1140 family protein	NA	A0A1B1IMW5	Lactococcus_phage	95.5	3.3e-54
WP_011835822.1|2095306_2095726_-	dUTP diphosphatase	NA	Q9MBX9	Lactococcus_phage	98.6	1.6e-71
WP_011835823.1|2095722_2096280_-	DUF1642 domain-containing protein	NA	Q9AZU5	Lactococcus_phage	47.3	4.2e-22
WP_011835824.1|2096295_2096532_-	hypothetical protein	NA	A0A023J2W2	Lactococcus_phage	55.7	2.8e-12
WP_014735137.1|2096512_2096707_-	hypothetical protein	NA	A0A1P8BKQ8	Lactococcus_phage	91.5	2.9e-23
WP_011835825.1|2096703_2096901_-	DUF1125 domain-containing protein	NA	NA	NA	NA	NA
WP_011835826.1|2096901_2097168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835827.1|2097148_2097481_-	hypothetical protein	NA	Q9G0E0	Lactococcus_phage	85.3	2.8e-10
WP_011835830.1|2098127_2098367_-	DUF1031 domain-containing protein	NA	A0A059NT75	Lactococcus_phage	98.7	2.3e-38
WP_011835831.1|2098363_2098738_-	DUF1064 domain-containing protein	NA	Q9AZV2	Lactococcus_phage	97.6	5.2e-61
WP_011835832.1|2098734_2099460_-	hypothetical protein	NA	A0A1P8BKN5	Lactococcus_phage	97.9	1.4e-131
WP_011835833.1|2099459_2100242_-	phage replisome organiser protein	NA	A0A1P8BKN4	Lactococcus_phage	95.4	8.2e-125
WP_011835834.1|2100370_2100796_-	single-stranded DNA-binding protein	NA	Q9MC32	Lactococcus_phage	97.9	8.0e-74
WP_011835835.1|2100788_2100923_-	translation initiation factor	NA	Q0ILF6	Lactococcus_phage	93.2	2.4e-16
WP_011835836.1|2101175_2101547_-	hypothetical protein	NA	Q0ILF6	Lactococcus_phage	100.0	3.3e-68
WP_011835837.1|2101555_2101951_-	hypothetical protein	NA	A0A1P8BL23	Lactococcus_phage	99.2	2.5e-69
WP_011835838.1|2102049_2102292_-	hypothetical protein	NA	A0A1B1IMF7	Lactococcus_phage	97.5	3.7e-36
WP_187287215.1|2102378_2102777_+	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	35.2	2.2e-17
WP_011835840.1|2102769_2102973_-	hypothetical protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	39.2	9.8e-06
WP_011835841.1|2103068_2103338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835842.1|2103351_2104110_-	phage repressor protein/antirepressor Ant	NA	A0A1B1IMQ3	Lactococcus_phage	72.2	4.4e-91
WP_011835843.1|2104122_2104371_-	helix-turn-helix transcriptional regulator	NA	J7KK54	Streptococcus_phage	51.7	2.2e-07
WP_011835844.1|2104475_2104712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835845.1|2104683_2104905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014735140.1|2105279_2105477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835847.1|2105760_2106258_+	helix-turn-helix domain-containing protein	NA	J7KJ52	Streptococcus_phage	50.4	1.7e-22
WP_011835848.1|2106263_2106698_+	zinc peptidase	NA	NA	NA	NA	NA
WP_011835849.1|2106711_2107047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014735141.1|2107114_2108296_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	47.5	2.0e-90
WP_011676957.1|2108590_2109097_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
2108316:2108338	attR	AACGTAACTAAAAACGTAACTAA	NA	NA	NA	NA
WP_011676958.1|2109106_2109295_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_011676959.1|2109305_2109866_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_011676960.1|2109893_2110136_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011835851.1|2110370_2111342_-|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
>prophage 11
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	2213441	2228382	2530294	terminase,integrase	Lactococcus_phage(87.5%)	21	2210232:2210247	2228468:2228483
2210232:2210247	attL	TTTTAACATAGTTCTA	NA	NA	NA	NA
WP_011835936.1|2213441_2213774_-	hypothetical protein	NA	Q9AZE0	Lactococcus_phage	90.7	4.8e-50
WP_011835937.1|2213773_2214214_-|terminase	terminase small subunit	terminase	Q9AZI3	Lactococcus_phage	89.0	8.3e-58
WP_011677047.1|2214346_2214889_-	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	82.2	9.3e-51
WP_011835938.1|2215105_2216734_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	91.9	1.4e-296
WP_011835939.1|2216744_2217539_-	bifunctional DNA primase/polymerase	NA	Q9AZI6	Lactococcus_phage	95.8	1.8e-151
WP_011835940.1|2217535_2217871_-	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	95.4	4.2e-54
WP_011835941.1|2217940_2218180_-	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	87.3	5.3e-35
WP_011835942.1|2218217_2218499_-	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	93.5	2.5e-44
WP_011835945.1|2218720_2218924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011835946.1|2218920_2219442_-	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	78.9	7.0e-72
WP_011835947.1|2219700_2220366_-	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	48.7	1.2e-47
WP_014735153.1|2220528_2220750_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011835948.1|2220920_2221463_+	helix-turn-helix transcriptional regulator	NA	A0A0P0IV68	Lactobacillus_phage	50.8	3.3e-08
WP_014735154.1|2221684_2221915_+	hypothetical protein	NA	Q9AZK0	Lactococcus_phage	84.2	3.5e-15
WP_014735155.1|2221987_2222182_+	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	93.8	2.5e-27
WP_011835949.1|2222363_2223098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835950.1|2223303_2223489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835951.1|2223675_2224740_+	hypothetical protein	NA	A0A141E0C6	Streptococcus_phage	54.6	1.6e-102
WP_011835952.1|2225391_2225706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011835953.1|2226509_2226704_+	hypothetical protein	NA	Q9AZK6	Lactococcus_phage	62.3	3.7e-10
WP_011835954.1|2227200_2228382_+|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	46.2	3.1e-91
2228468:2228483	attR	TTTTAACATAGTTCTA	NA	NA	NA	NA
>prophage 12
NC_017949	Lactococcus lactis subsp. cremoris NZ9000, complete sequence	2530294	2480188	2492765	2530294	integrase	Lactococcus_phage(92.31%)	16	2480846:2480861	2489836:2489851
WP_011836143.1|2480188_2482189_-	ATP-dependent DNA helicase RecG	NA	B2CRJ8	Acidianus_filamentous_virus	24.0	2.1e-07
2480846:2480861	attL	TTCAGAAAACTGTTCA	NA	NA	NA	NA
WP_041931367.1|2482327_2482654_-	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_011836145.1|2482742_2483921_-|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	46.8	3.6e-92
WP_011836146.1|2484448_2485051_-	helix-turn-helix transcriptional regulator	NA	A0A1P8BMN9	Lactococcus_phage	59.1	1.5e-12
WP_014735188.1|2485212_2485416_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011836147.1|2485434_2486127_+	Bro-N domain-containing protein	NA	Q9AZJ5	Lactococcus_phage	47.8	1.1e-19
WP_011836148.1|2486380_2486914_+	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	62.1	2.0e-50
WP_011836149.1|2486906_2487188_+	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	94.6	6.1e-46
WP_011836150.1|2487230_2487470_+	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	91.1	6.3e-36
WP_011836152.1|2487717_2488047_+	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	95.4	2.9e-55
WP_011836153.1|2488155_2488950_+	bifunctional DNA primase/polymerase	NA	Q9AZI6	Lactococcus_phage	94.7	1.5e-150
WP_011836154.1|2488960_2490589_+	DNA primase	NA	Q9AZI5	Lactococcus_phage	92.3	3.4e-298
2489836:2489851	attR	TGAACAGTTTTCTGAA	NA	NA	NA	NA
WP_011836155.1|2490816_2491359_+	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	71.4	4.2e-59
WP_011836156.1|2491631_2491934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011836157.1|2492007_2492418_+	DUF722 domain-containing protein	NA	Q9AZI2	Lactococcus_phage	94.9	8.2e-68
WP_011836158.1|2492441_2492765_+	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	89.7	7.4e-48
