assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000143145.1_ASM14314v1	NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	1	1334687-1334929	1	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh	Orphan	TGATCCCGATAACGACGGCACGCT	24	0	0	NA	NA	NA	3	3	Orphan	cas3,PD-DExK,csa3,DEDDh	NA|340aa|up_9|NC_014313.1_1323320_1324340_+,NA|107aa|up_1|NC_014313.1_1333203_1333524_+,NA|112aa|down_0|NC_014313.1_1335577_1335913_-,NA|193aa|down_5|NC_014313.1_1339440_1340019_-,NA|327aa|down_7|NC_014313.1_1341009_1341990_-	NA|340aa|up_9|NC_014313.1_1323320_1324340_+	NA	NA|134aa|up_8|NC_014313.1_1324877_1325279_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|470aa|up_7|NC_014313.1_1325259_1326669_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|180aa|up_6|NC_014313.1_1326671_1327211_-	pfam02566, OsmC, OsmC-like protein	NA|219aa|up_5|NC_014313.1_1327314_1327971_-	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|423aa|up_4|NC_014313.1_1327960_1329229_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|422aa|up_3|NC_014313.1_1329623_1330889_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|609aa|up_2|NC_014313.1_1331040_1332867_-	cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF)	NA|107aa|up_1|NC_014313.1_1333203_1333524_+	NA	NA|206aa|up_0|NC_014313.1_1333689_1334307_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|112aa|down_0|NC_014313.1_1335577_1335913_-	NA	NA|327aa|down_1|NC_014313.1_1335934_1336915_-	cd14789, Tiki, Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues	NA|319aa|down_2|NC_014313.1_1336940_1337897_-	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	NA|181aa|down_3|NC_014313.1_1337893_1338436_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|335aa|down_4|NC_014313.1_1338439_1339444_-	pfam13519, VWA_2, von Willebrand factor type A domain	NA|193aa|down_5|NC_014313.1_1339440_1340019_-	NA	NA|335aa|down_6|NC_014313.1_1340008_1341013_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|327aa|down_7|NC_014313.1_1341009_1341990_-	NA	NA|286aa|down_8|NC_014313.1_1341989_1342847_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|336aa|down_9|NC_014313.1_1342843_1343851_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]
GCF_000143145.1_ASM14314v1	NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	2	2253454-2253559	2	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh	Orphan	CCGCCAGCACAGGCGTGTGTCGTCGTTCTTCGCA	34	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh	NA|207aa|up_4|NC_014313.1_2243630_2244251_-,NA|480aa|up_1|NC_014313.1_2249704_2251144_-,NA|96aa|down_4|NC_014313.1_2256074_2256362_-,NA|96aa|down_6|NC_014313.1_2257466_2257754_+,NA|77aa|down_9|NC_014313.1_2260413_2260644_-	NA|318aa|up_9|NC_014313.1_2239581_2240535_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|174aa|up_8|NC_014313.1_2240755_2241277_-	PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional	NA|123aa|up_7|NC_014313.1_2241650_2242019_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|138aa|up_6|NC_014313.1_2242095_2242509_+	cd08355, TioX_like, Micromonospora sp	NA|132aa|up_5|NC_014313.1_2243182_2243578_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|207aa|up_4|NC_014313.1_2243630_2244251_-	NA	NA|1044aa|up_3|NC_014313.1_2245521_2248653_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|158aa|up_2|NC_014313.1_2249050_2249524_+	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|480aa|up_1|NC_014313.1_2249704_2251144_-	NA	NA|449aa|up_0|NC_014313.1_2251130_2252477_-	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|115aa|down_0|NC_014313.1_2253734_2254079_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|99aa|down_1|NC_014313.1_2254305_2254602_-	PLN02451, PLN02451, homoserine kinase	NA|236aa|down_2|NC_014313.1_2254934_2255642_+	PRK15219, PRK15219, carbonic anhydrase; Provisional	NA|93aa|down_3|NC_014313.1_2255667_2255946_-	cd03684, ClC_3_like, ClC-3-like chloride channel proteins	NA|96aa|down_4|NC_014313.1_2256074_2256362_-	NA	NA|282aa|down_5|NC_014313.1_2256569_2257415_+	PRK06914, PRK06914, SDR family oxidoreductase	NA|96aa|down_6|NC_014313.1_2257466_2257754_+	NA	NA|394aa|down_7|NC_014313.1_2257889_2259071_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|440aa|down_8|NC_014313.1_2259067_2260387_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|77aa|down_9|NC_014313.1_2260413_2260644_-	NA
GCF_000143145.1_ASM14314v1	NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	3	2256456-2256530	3	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh	Orphan	CGCTTCGCAGAGCCGGCCGCAAGGT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh	NA|207aa|up_9|NC_014313.1_2243630_2244251_-,NA|480aa|up_6|NC_014313.1_2249704_2251144_-,NA|96aa|up_0|NC_014313.1_2256074_2256362_-,NA|96aa|down_1|NC_014313.1_2257466_2257754_+,NA|77aa|down_4|NC_014313.1_2260413_2260644_-,NA|92aa|down_7|NC_014313.1_2263209_2263485_-,NA|94aa|down_9|NC_014313.1_2264377_2264659_+	NA|207aa|up_9|NC_014313.1_2243630_2244251_-	NA	NA|1044aa|up_8|NC_014313.1_2245521_2248653_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|158aa|up_7|NC_014313.1_2249050_2249524_+	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|480aa|up_6|NC_014313.1_2249704_2251144_-	NA	NA|449aa|up_5|NC_014313.1_2251130_2252477_-	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|115aa|up_4|NC_014313.1_2253734_2254079_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|99aa|up_3|NC_014313.1_2254305_2254602_-	PLN02451, PLN02451, homoserine kinase	NA|236aa|up_2|NC_014313.1_2254934_2255642_+	PRK15219, PRK15219, carbonic anhydrase; Provisional	NA|93aa|up_1|NC_014313.1_2255667_2255946_-	cd03684, ClC_3_like, ClC-3-like chloride channel proteins	NA|96aa|up_0|NC_014313.1_2256074_2256362_-	NA	NA|282aa|down_0|NC_014313.1_2256569_2257415_+	PRK06914, PRK06914, SDR family oxidoreductase	NA|96aa|down_1|NC_014313.1_2257466_2257754_+	NA	NA|394aa|down_2|NC_014313.1_2257889_2259071_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|440aa|down_3|NC_014313.1_2259067_2260387_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|77aa|down_4|NC_014313.1_2260413_2260644_-	NA	NA|326aa|down_5|NC_014313.1_2261115_2262093_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|290aa|down_6|NC_014313.1_2262330_2263200_+	pfam01904, DUF72, Protein of unknown function DUF72	NA|92aa|down_7|NC_014313.1_2263209_2263485_-	NA	NA|134aa|down_8|NC_014313.1_2263579_2263981_-	PLN03138, PLN03138, Protein TOC75; Provisional	NA|94aa|down_9|NC_014313.1_2264377_2264659_+	NA
GCF_000143145.1_ASM14314v1	NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	4	2611083-2611159	4	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh	Orphan	CGGGGAGCCGGCCGCCAGCGCGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh	NA|218aa|up_1|NC_014313.1_2609838_2610492_-,NA|67aa|up_0|NC_014313.1_2610773_2610974_-,NA|92aa|down_0|NC_014313.1_2611220_2611496_-,NA|143aa|down_6|NC_014313.1_2618878_2619307_+,NA|142aa|down_8|NC_014313.1_2620255_2620681_-	NA|110aa|up_9|NC_014313.1_2599610_2599940_-	pfam00816, Histone_HNS, H-NS histone family	NA|197aa|up_8|NC_014313.1_2600423_2601014_+	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|612aa|up_7|NC_014313.1_2601100_2602936_+	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1	NA|450aa|up_6|NC_014313.1_2603073_2604423_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|99aa|up_5|NC_014313.1_2604435_2604732_-	pfam14020, DUF4236, Protein of unknown function (DUF4236)	NA|479aa|up_4|NC_014313.1_2604856_2606293_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|627aa|up_3|NC_014313.1_2606516_2608397_+	cd03677, MM_CoA_mutase_beta, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Beta subunit-like subfamily; contains bacterial proteins similar to the beta subunit of MCMs from Propionbacterium shermanni and Streptomyces cinnamonensis, which are alpha/beta heterodimers	NA|456aa|up_2|NC_014313.1_2608482_2609850_+	cd01034, EriC_like, ClC chloride channel family	NA|218aa|up_1|NC_014313.1_2609838_2610492_-	NA	NA|67aa|up_0|NC_014313.1_2610773_2610974_-	NA	NA|92aa|down_0|NC_014313.1_2611220_2611496_-	NA	NA|313aa|down_1|NC_014313.1_2611571_2612510_-	pfam05675, DUF817, Protein of unknown function (DUF817)	NA|725aa|down_2|NC_014313.1_2612713_2614888_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|636aa|down_3|NC_014313.1_2614952_2616860_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|153aa|down_4|NC_014313.1_2617151_2617610_+	cd04223, N2OR_C, The C-terminal cupredoxin domain of Nitrous-oxide reductase	NA|314aa|down_5|NC_014313.1_2617619_2618561_-	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|143aa|down_6|NC_014313.1_2618878_2619307_+	NA	NA|222aa|down_7|NC_014313.1_2619424_2620090_-	pfam07813, LTXXQ, LTXXQ motif family protein	NA|142aa|down_8|NC_014313.1_2620255_2620681_-	NA	NA|541aa|down_9|NC_014313.1_2620839_2622462_-	pfam05990, DUF900, Alpha/beta hydrolase of unknown function (DUF900)
GCF_000143145.1_ASM14314v1	NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	5	3300768-3300902	5	CRISPRCasFinder	no		cas3,PD-DExK,csa3,DEDDh	Orphan	GGTTGCTCGTCTTGCTCCGGTGCGCATCGGCAGCGAGCC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,csa3,DEDDh	NA|122aa|up_9|NC_014313.1_3289306_3289672_-,NA|139aa|up_8|NC_014313.1_3289695_3290112_-,NA|210aa|down_8|NC_014313.1_3312223_3312853_-	NA|122aa|up_9|NC_014313.1_3289306_3289672_-	NA	NA|139aa|up_8|NC_014313.1_3289695_3290112_-	NA	NA|317aa|up_7|NC_014313.1_3290263_3291214_-	PRK05246, PRK05246, glutathione synthetase; Provisional	NA|745aa|up_6|NC_014313.1_3291388_3293623_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|219aa|up_5|NC_014313.1_3293726_3294383_+	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|468aa|up_4|NC_014313.1_3294429_3295833_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|323aa|up_3|NC_014313.1_3295901_3296870_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|339aa|up_2|NC_014313.1_3296897_3297914_+	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|471aa|up_1|NC_014313.1_3297953_3299366_-	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|445aa|up_0|NC_014313.1_3299369_3300704_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|987aa|down_0|NC_014313.1_3300965_3303926_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|300aa|down_1|NC_014313.1_3304033_3304933_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|400aa|down_2|NC_014313.1_3305044_3306244_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|215aa|down_3|NC_014313.1_3306447_3307092_+	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|324aa|down_4|NC_014313.1_3307157_3308129_-	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|368aa|down_5|NC_014313.1_3308314_3309418_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|199aa|down_6|NC_014313.1_3309713_3310310_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|260aa|down_7|NC_014313.1_3311305_3312085_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|210aa|down_8|NC_014313.1_3312223_3312853_-	NA	NA|616aa|down_9|NC_014313.1_3312908_3314756_-	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed
