The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	3638969	682392	738935	3638969	tail,integrase,transposase	Paenibacillus_phage(28.57%)	57	674661:674676	699203:699218
674661:674676	attL	CCGTCTGACGCTGTCG	NA	NA	NA	NA
WP_013214694.1|682392_682629_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_150103182.1|682625_682976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013214696.1|683273_684263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041921810.1|684259_684997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013214698.1|685038_686163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049775146.1|686654_688730_-	hypothetical protein	NA	H6WU26	Pseudomonas_phage	32.4	5.5e-27
WP_013214701.1|689169_689853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013214702.1|690305_691160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013214703.1|691203_691926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013214704.1|691922_692675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013214705.1|692850_694098_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A077KET4	Ralstonia_phage	48.2	4.0e-81
WP_013214706.1|694545_695640_+	polyphosphate kinase 2	NA	NA	NA	NA	NA
WP_013214707.1|695726_696143_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_013214708.1|696451_697498_+	threonine-phosphate decarboxylase	NA	A0A142C026	Faustovirus	24.6	1.8e-05
WP_013214709.1|697772_700151_+	TonB-dependent receptor	NA	NA	NA	NA	NA
699203:699218	attR	CCGTCTGACGCTGTCG	NA	NA	NA	NA
WP_013214710.1|700150_701185_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013214711.1|701191_702004_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_013214712.1|702000_702750_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	34.5	1.2e-27
WP_013214713.1|702746_703988_+	NnrS family protein	NA	NA	NA	NA	NA
WP_013214714.1|703984_704956_+	NnrS family protein	NA	NA	NA	NA	NA
WP_013214715.1|704952_705123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013214716.1|705343_706024_-	DsbA family protein	NA	NA	NA	NA	NA
WP_013214717.1|706106_706583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013214718.1|706602_707691_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_013214719.1|708053_708431_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013214720.1|708608_709643_+	radical SAM protein	NA	NA	NA	NA	NA
WP_041921515.1|709668_710733_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013214722.1|710754_712056_+	radical SAM protein	NA	NA	NA	NA	NA
WP_081446217.1|712079_713141_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_013214724.1|713137_713833_+	GMP synthase - glutamine amidotransferase domain-like protein	NA	NA	NA	NA	NA
WP_013214725.1|714006_714384_+	DsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA	NA
WP_013214726.1|714409_715153_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_013214727.1|715199_716600_+	heterodisulfide reductase subunit B	NA	NA	NA	NA	NA
WP_013214728.1|716664_717714_+	CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein	NA	NA	NA	NA	NA
WP_013214729.1|717718_718567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013214730.1|718579_719362_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_041921826.1|719434_720355_+	CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein	NA	NA	NA	NA	NA
WP_013214732.1|720360_720831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013214733.1|720865_721306_+	glycine cleavage system protein H	NA	NA	NA	NA	NA
WP_041921827.1|721327_722722_-	cytochrome P450	NA	I6XNL0	Cotesia_sesamiae_Mombasa_bracovirus	23.3	2.3e-16
WP_081446218.1|722916_723198_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_013214736.1|723295_724351_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_013214737.1|724363_724738_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013214738.1|724795_725131_-	regulatory protein SoxS	NA	NA	NA	NA	NA
WP_041921518.1|725183_725783_-	sulfur oxidation c-type cytochrome SoxX	NA	NA	NA	NA	NA
WP_013214740.1|725829_726663_-	sulfur oxidation c-type cytochrome SoxA	NA	NA	NA	NA	NA
WP_013214741.1|726814_727276_+	thiosulfate oxidation carrier protein SoxY	NA	NA	NA	NA	NA
WP_013214742.1|727313_727643_+	thiosulfate oxidation carrier complex protein SoxZ	NA	NA	NA	NA	NA
WP_013214743.1|727685_729374_+	thiosulfohydrolase SoxB	NA	NA	NA	NA	NA
WP_013214472.1|729603_730869_-|transposase	IS256-like element IS1354 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	26.7	1.2e-27
WP_085985066.1|731030_731868_+|transposase	IS5-like element IS1355 family transposase	transposase	NA	NA	NA	NA
WP_013214745.1|731934_733170_+|transposase	IS701-like element IS1357 family transposase	transposase	NA	NA	NA	NA
WP_013214746.1|733427_734225_-	MEDS domain-containing protein	NA	NA	NA	NA	NA
WP_013214747.1|734915_735782_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_158020949.1|735953_736946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013214749.1|736980_737559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013214472.1|737669_738935_-|transposase	IS256-like element IS1354 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	26.7	1.2e-27
>prophage 2
NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	3638969	1155340	1172485	3638969	head,protease,tail,capsid,portal	Rhodobacter_phage(27.27%)	18	NA	NA
WP_150103340.1|1155340_1157329_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	39.0	1.1e-69
WP_041921563.1|1157338_1157740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215138.1|1158559_1158979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215139.1|1159143_1159848_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	49.0	4.9e-36
WP_013215140.1|1160021_1161263_+|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	41.2	4.9e-71
WP_013215141.1|1161519_1162095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215142.1|1162091_1162424_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_013215143.1|1162420_1162591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215144.1|1162590_1163004_+	DUF3168 domain-containing protein	NA	A1BU61	Staphylococcus_virus	31.0	1.2e-05
WP_013215145.1|1163162_1163576_+|tail	phage major tail protein, TP901-1 family	tail	I3UM07	Rhodobacter_phage	39.4	2.7e-18
WP_013215146.1|1163737_1164118_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_013215147.1|1164117_1164291_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_013215148.1|1164295_1164889_+|tail	phage tail tape measure protein	tail	G9JXH3	Shigella_phage	35.7	1.4e-07
WP_013215149.1|1164901_1165540_+	DUF2460 domain-containing protein	NA	A0A0K1Y6G4	Rhodobacter_phage	47.5	1.2e-46
WP_013215150.1|1165536_1166397_+	DUF2163 domain-containing protein	NA	A0A0K0PVK1	Roseobacter_phage	50.4	8.9e-72
WP_013215151.1|1166400_1166850_+	C40 family peptidase	NA	F4YXU4	Roseobacter_phage	44.4	3.4e-30
WP_013215152.1|1166853_1170801_+	glycoside hydrolase TIM-barrel-like domain-containing protein	NA	A0A0K1LL82	Rhodobacter_phage	42.7	1.1e-252
WP_013215153.1|1171171_1172485_+	TIGR02594 family protein	NA	A0A222YWL8	Escherichia_phage	44.9	2.4e-28
>prophage 3
NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	3638969	1214330	1252924	3638969	head,terminase,tail,capsid,portal,integrase	Vibrio_phage(20.0%)	58	1208302:1208317	1227713:1227728
1208302:1208317	attL	CGCCGCTCGATCTCGA	NA	NA	NA	NA
WP_169305478.1|1214330_1215383_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_013215190.1|1215438_1215771_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_013215191.1|1215790_1216147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013215192.1|1216150_1216372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013215193.1|1216368_1216620_-	Lar family restriction alleviation protein	NA	NA	NA	NA	NA
WP_013215194.1|1216831_1217590_-	hypothetical protein	NA	A0A0E3M3Z6	Verrucomicrobia_phage	45.6	2.1e-45
WP_013215195.1|1217592_1218057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013215199.1|1218808_1219285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150103203.1|1219287_1219698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013215201.1|1220035_1220656_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_169305479.1|1221274_1221913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215204.1|1222152_1222977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215205.1|1222973_1223381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041921880.1|1223599_1224298_+	hypothetical protein	NA	A0A076GD02	Sinorhizobium_phage	49.3	7.2e-48
WP_013215208.1|1224294_1224648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150103344.1|1224740_1226399_+	ATP-dependent helicase	NA	A0A1X9HX80	Ruegeria_phage	44.3	5.8e-120
WP_013215210.1|1226409_1226637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215211.1|1226633_1227158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215212.1|1227150_1227537_+	DUF2312 domain-containing protein	NA	NA	NA	NA	NA
WP_013215213.1|1227546_1227882_+	hypothetical protein	NA	NA	NA	NA	NA
1227713:1227728	attR	CGCCGCTCGATCTCGA	NA	NA	NA	NA
WP_150103205.1|1228181_1229036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215215.1|1229019_1229412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215216.1|1229408_1229948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215217.1|1229944_1230826_+	DNA adenine methylase	NA	Q5QF26	Pseudomonas_virus	55.1	9.7e-82
WP_041921570.1|1230919_1231255_+	hypothetical protein	NA	A0A2I7S754	Vibrio_phage	52.7	2.8e-21
WP_013215220.1|1231404_1231725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215222.1|1232025_1232298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215223.1|1232859_1234128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013215224.1|1234263_1234521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013215225.1|1234531_1234747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013215226.1|1234879_1235086_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_150103206.1|1235088_1235301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215228.1|1235304_1235463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215229.1|1235459_1235717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041921574.1|1235706_1235913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215230.1|1236123_1236351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215231.1|1236347_1236623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215232.1|1236726_1237008_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013215233.1|1237007_1237250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215234.1|1237915_1238056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215235.1|1238145_1238298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215237.1|1238491_1238707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041921576.1|1238717_1239134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215239.1|1239146_1240457_+	peptidoglycan-binding protein	NA	NA	NA	NA	NA
WP_013215241.1|1240639_1240828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215242.1|1240820_1241726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215243.1|1241978_1242590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215244.1|1242589_1244461_+|terminase	phage terminase large subunit family protein	terminase	A0A059WKL6	Vibrio_phage	36.9	2.2e-99
WP_169305480.1|1244479_1244710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215246.1|1244719_1246345_+|portal	phage portal protein	portal	A0A2D1GMV5	Marinobacter_phage	34.1	1.4e-65
WP_013215247.1|1246350_1247640_+	S49 family peptidase	NA	A0A2D1GN02	Marinobacter_phage	35.2	5.4e-49
WP_013215248.1|1247691_1248366_+|head	head decoration protein	head	NA	NA	NA	NA
WP_013215249.1|1248483_1249557_+|capsid	major capsid protein	capsid	Q9JMM2	Wolbachia_phage	40.8	1.8e-58
WP_013215250.1|1249558_1249924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215251.1|1249923_1250322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215252.1|1250325_1251123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215253.1|1251144_1251354_+	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_013215254.1|1251388_1252924_+|tail	Mu tail sheath family protein	tail	B5TK67	Pseudomonas_phage	35.6	2.6e-66
>prophage 4
NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	3638969	1287724	1295397	3638969	tRNA	uncultured_Mediterranean_phage(85.71%)	9	NA	NA
WP_150103346.1|1287724_1288495_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	33.7	4.4e-30
WP_013215288.1|1288534_1289392_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	50.0	1.0e-43
WP_013215289.1|1289570_1289780_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	47.4	4.5e-06
WP_013215290.1|1289814_1290198_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_013215291.1|1290201_1291032_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	45.2	2.4e-50
WP_013215292.1|1291120_1292509_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	1.9e-103
WP_013215293.1|1292508_1292760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013215294.1|1292761_1293526_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.8	1.7e-37
WP_013215296.1|1293810_1295397_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	43.6	1.7e-20
>prophage 5
NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	3638969	1762049	1769605	3638969	tRNA,integrase	Klosneuvirus(16.67%)	6	1768188:1768206	1781218:1781236
WP_013215695.1|1762049_1763612_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	37.9	2.6e-98
WP_013215696.1|1763661_1764783_-	DNA polymerase III subunit delta'	NA	S5WKH4	Pseudomonas_phage	25.7	5.1e-11
WP_013215697.1|1764782_1765412_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	36.8	1.4e-29
WP_013215698.1|1765441_1766635_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.1	2.2e-44
WP_013215699.1|1766743_1767877_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	52.4	3.3e-18
1768188:1768206	attL	CACCCCTTCCGCCAGAAGC	NA	NA	NA	NA
WP_013215700.1|1768348_1769605_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	49.2	8.0e-106
WP_013215700.1|1768348_1769605_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	49.2	8.0e-106
1781218:1781236	attR	CACCCCTTCCGCCAGAAGC	NA	NA	NA	NA
>prophage 6
NC_014313	Hyphomicrobium denitrificans ATCC 51888, complete sequence	3638969	3065270	3077339	3638969	head,protease,tail,capsid,portal	Azospirillum_phage(60.0%)	18	NA	NA
WP_013216920.1|3065270_3067382_-|tail	phage tail tape measure protein, conserved region	tail	NA	NA	NA	NA
WP_013216921.1|3067374_3067608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216922.1|3067604_3067985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216923.1|3068003_3068474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216924.1|3068486_3068882_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_013216925.1|3068968_3069484_-	phage protein, HK97 gp10 family	NA	NA	NA	NA	NA
WP_013216926.1|3069480_3069816_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_013216927.1|3069815_3070391_-|head,tail	phage head-tail connector protein	head,tail	A0A141GEW4	Brucella_phage	30.6	9.0e-12
WP_013216928.1|3070394_3070772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216929.1|3070803_3071217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216930.1|3071258_3071735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216931.1|3071852_3072305_-	hypothetical protein	NA	B0VK34	Azospirillum_phage	53.1	5.2e-31
WP_013216932.1|3072408_3073911_-|capsid	phage major capsid protein	capsid	B0VK33	Azospirillum_phage	34.3	2.1e-36
WP_013216933.1|3073957_3074572_-|head,protease	HK97 family phage prohead protease	head,protease	B0VK32	Azospirillum_phage	41.1	1.5e-25
WP_013216934.1|3074607_3075441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216935.1|3075463_3075742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216936.1|3075723_3075996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013216937.1|3075992_3077339_-|portal	phage portal protein	portal	G3EN97	Psychrobacter_phage	29.8	1.8e-34
