assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000092965.1_ASM9296v1	NC_014209	Thermoanaerobacter mathranii subsp. mathranii str. A3, complete genome	1	21980-25625	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas8b1	Unclear	ATTTACATCCCTCATAGTTCAGATAAAAC,ATTTACATCCCTCATAGTTCAGATAAAAC,ATTTACATCCCTCATAGTTCAGATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	55,55,55	55	Unclear	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas8b1	NA|160aa|up_4|NC_014209.1_18401_18881_+,NA|93aa|up_3|NC_014209.1_18890_19169_+,NA|116aa|up_2|NC_014209.1_19232_19580_+,NA|62aa|up_1|NC_014209.1_19693_19879_+,NA	NA|806aa|up_9|NC_014209.1_11015_13433_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|119aa|up_8|NC_014209.1_14010_14367_+	TIGR01547, Uncharacterized_protein_YqaT, phage terminase, large subunit, PBSX family	NA|479aa|up_7|NC_014209.1_14408_15845_+	pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like	NA|317aa|up_6|NC_014209.1_15851_16802_+	pfam06152, Phage_min_cap2, Phage minor capsid protein 2	NA|468aa|up_5|NC_014209.1_16900_18304_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|160aa|up_4|NC_014209.1_18401_18881_+	NA	NA|93aa|up_3|NC_014209.1_18890_19169_+	NA	NA|116aa|up_2|NC_014209.1_19232_19580_+	NA	NA|62aa|up_1|NC_014209.1_19693_19879_+	NA	NA|347aa|up_0|NC_014209.1_20069_21110_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas2|88aa|down_0|NC_014209.1_25832_26096_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NC_014209.1_26286_27267_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|171aa|down_2|NC_014209.1_27272_27785_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|778aa|down_3|NC_014209.1_27804_30138_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|249aa|down_4|NC_014209.1_30127_30874_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|310aa|down_5|NC_014209.1_30876_31806_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|549aa|down_6|NC_014209.1_31798_33445_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|262aa|down_7|NC_014209.1_33473_34259_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|342aa|down_8|NC_014209.1_34429_35455_-	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|168aa|down_9|NC_014209.1_36065_36569_+	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed
GCF_000092965.1_ASM9296v1	NC_014209	Thermoanaerobacter mathranii subsp. mathranii str. A3, complete genome	2	791663-793751	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas8b1	Type III-C,Type III-A, Type III-C?,Type III-B,Type III-D	GTTTTTAGCCTACCTATAAGGAATTGAAAC,GTTTTTAGCCTACCTATAAGGAATTGAAAC,GTTTTTAGCCTACCTATAAGGAATTGAAACNNN,GTTTTTAGCCTACCTATAAGGAATTGAAAC	30,30,33,30	0	0	NA	NA	NA:NA:NA:NA	29,29,31,29	31	TypeIII-C,TypeIII-A,TypeIII-C?,TypeIII-B,TypeIII-D	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas8b1	NA,NA	NA|384aa|up_9|NC_014209.1_774960_776112_+	pfam09661, DUF2398, Protein of unknown function (DUF2398)	NA|1389aa|up_8|NC_014209.1_776104_780271_+	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein	NA|441aa|up_7|NC_014209.1_780263_781586_+	TIGR02679, conserved_hypothetical_protein, TIGR02679 family protein	cmr1gr7|444aa|up_6|NC_014209.1_781929_783261_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|134aa|up_5|NC_014209.1_783244_783646_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	cmr4gr7|323aa|up_4|NC_014209.1_785221_786190_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|136aa|up_3|NC_014209.1_786186_786594_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|268aa|up_2|NC_014209.1_786583_787387_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cas10|907aa|up_1|NC_014209.1_787534_790255_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|357aa|up_0|NC_014209.1_790258_791329_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	NA|332aa|down_0|NC_014209.1_795103_796099_+	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|290aa|down_1|NC_014209.1_796559_797429_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|177aa|down_2|NC_014209.1_797470_798001_+	PRK06934, PRK06934, flavodoxin; Provisional	NA|147aa|down_3|NC_014209.1_798030_798471_+	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain	NA|131aa|down_4|NC_014209.1_798611_799004_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|163aa|down_5|NC_014209.1_799367_799856_+	pfam06695, Sm_multidrug_ex, Putative small multi-drug export protein	NA|669aa|down_6|NC_014209.1_800274_802281_+	pfam03030, H_PPase, Inorganic H+ pyrophosphatase	NA|147aa|down_7|NC_014209.1_802424_802865_+	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC	NA|503aa|down_8|NC_014209.1_803010_804519_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|180aa|down_9|NC_014209.1_804756_805296_+	COG0250, NusG, Transcription antiterminator [Transcription]
GCF_000092965.1_ASM9296v1	NC_014209	Thermoanaerobacter mathranii subsp. mathranii str. A3, complete genome	3	2216141-2217710	3,3,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas8b1	Type I-B	GTTTCAATTCCTTATAGGTAGGCTAAAAAC,GTTTCAATTCCTTATAGGTAGGCTAAAAAC,GTTTTTAGCCTACCTATAAGGAATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	23,23,22	23	TypeI-B	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas8b1	NA|182aa|up_7|NC_014209.1_2210634_2211180_+,NA|91aa|up_0|NC_014209.1_2215405_2215678_+,NA	cas4|166aa|up_9|NC_014209.1_2208337_2208835_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|304aa|up_8|NC_014209.1_2209618_2210530_+	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|182aa|up_7|NC_014209.1_2210634_2211180_+	NA	NA|220aa|up_6|NC_014209.1_2211689_2212349_+	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|185aa|up_5|NC_014209.1_2212413_2212968_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|128aa|up_4|NC_014209.1_2213287_2213671_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|84aa|up_3|NC_014209.1_2213820_2214072_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|83aa|up_2|NC_014209.1_2214776_2215025_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|135aa|up_1|NC_014209.1_2214958_2215363_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|91aa|up_0|NC_014209.1_2215405_2215678_+	NA	cas3|785aa|down_0|NC_014209.1_2217892_2220247_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|238aa|down_1|NC_014209.1_2220230_2220944_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|305aa|down_2|NC_014209.1_2220956_2221871_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|593aa|down_3|NC_014209.1_2221854_2223633_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|252aa|down_4|NC_014209.1_2223651_2224407_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|424aa|down_5|NC_014209.1_2225707_2226979_+	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|138aa|down_6|NC_014209.1_2227019_2227433_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|410aa|down_7|NC_014209.1_2227429_2228659_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|350aa|down_8|NC_014209.1_2228655_2229705_-	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|468aa|down_9|NC_014209.1_2229715_2231119_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB
