assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000092845.1_ASM9284v1	NC_014150	Brachyspira murdochii DSM 12563, complete sequence	1	433533-433683	1	CRISPRCasFinder	no		DinG,WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh	Orphan	CCAAATATAAAAATTGTGAGCGGACAGCGTCATTTGCTATACATTTT	47	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh	NA|50aa|up_7|NC_014150.1_421451_421601_-,NA	NA|350aa|up_9|NC_014150.1_418751_419801_+	cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system	NA|480aa|up_8|NC_014150.1_419864_421304_-	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|50aa|up_7|NC_014150.1_421451_421601_-	NA	NA|527aa|up_6|NC_014150.1_422917_424498_-	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]	NA|607aa|up_5|NC_014150.1_424528_426349_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|472aa|up_4|NC_014150.1_426450_427866_-	PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	NA|294aa|up_3|NC_014150.1_429940_430822_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|305aa|up_2|NC_014150.1_431080_431995_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|188aa|up_1|NC_014150.1_432143_432707_-	TIGR03137, AhpC, peroxiredoxin	NA|190aa|up_0|NC_014150.1_432941_433511_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|372aa|down_0|NC_014150.1_433764_434880_+	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|153aa|down_1|NC_014150.1_434884_435343_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|574aa|down_2|NC_014150.1_435416_437138_-	COG3392, COG3392, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|607aa|down_3|NC_014150.1_437316_439137_+	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|443aa|down_4|NC_014150.1_439189_440518_-	cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM	NA|336aa|down_5|NC_014150.1_440718_441726_-	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|132aa|down_6|NC_014150.1_442055_442451_-	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|165aa|down_7|NC_014150.1_442544_443039_+	COG3467, COG3467, Predicted flavin-nucleotide-binding protein [General function prediction only]	NA|463aa|down_8|NC_014150.1_443039_444428_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|453aa|down_9|NC_014150.1_444431_445790_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
GCF_000092845.1_ASM9284v1	NC_014150	Brachyspira murdochii DSM 12563, complete sequence	2	1428031-1431218	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	DinG,WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh	Unclear	ATTTCTAATCTAACCATACTGGAATGTAAA,ATTTCTAATCTAACCATACTGGAATGTAAAA,ATTTCTAATCTAACCATACTGGAATGTAAA,ATTTCTAATCTAACCATACTGGAATGTAAAT	30,31,30,31	0	0	NA	NA	NA:NA:NA:NA	44,47,47,44	47	Unclear	DinG,WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh	NA,NA|925aa|down_2|NC_014150.1_1434289_1437064_+	NA|218aa|up_9|NC_014150.1_1417558_1418212_-	PRK14811, PRK14811, formamidopyrimidine-DNA glycosylase; Provisional	NA|313aa|up_8|NC_014150.1_1418333_1419272_-	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs	cas6|253aa|up_7|NC_014150.1_1419575_1420334_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|587aa|up_6|NC_014150.1_1420350_1422111_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|298aa|up_5|NC_014150.1_1422134_1423028_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|247aa|up_4|NC_014150.1_1423020_1423761_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|764aa|up_3|NC_014150.1_1423760_1426052_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas4|168aa|up_2|NC_014150.1_1426059_1426563_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|331aa|up_1|NC_014150.1_1426590_1427583_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|95aa|up_0|NC_014150.1_1427589_1427874_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|395aa|down_0|NC_014150.1_1431610_1432795_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|389aa|down_1|NC_014150.1_1432791_1433958_+	pfam00027, cNMP_binding, Cyclic nucleotide-binding domain	NA|925aa|down_2|NC_014150.1_1434289_1437064_+	NA	NA|375aa|down_3|NC_014150.1_1437382_1438507_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|311aa|down_4|NC_014150.1_1438917_1439850_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|327aa|down_5|NC_014150.1_1439937_1440918_-	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	NA|400aa|down_6|NC_014150.1_1441470_1442670_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|397aa|down_7|NC_014150.1_1442707_1443898_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|601aa|down_8|NC_014150.1_1443906_1445709_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|120aa|down_9|NC_014150.1_1445979_1446339_-	pfam07892, DUF1667, Protein of unknown function (DUF1667)
GCF_000092845.1_ASM9284v1	NC_014150	Brachyspira murdochii DSM 12563, complete sequence	3	1620794-1620928	3	CRISPRCasFinder	no		DinG,WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh	Orphan	TCACTTGCTTTGAGTTTATAGGCGAGCACGAGCATAACAA	40	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh	NA|520aa|up_7|NC_014150.1_1607872_1609432_+,NA|147aa|up_5|NC_014150.1_1610414_1610855_+,NA|281aa|up_4|NC_014150.1_1610949_1611792_+,NA|265aa|up_2|NC_014150.1_1614374_1615169_+,NA|294aa|up_1|NC_014150.1_1616814_1617696_+,NA|265aa|down_0|NC_014150.1_1620932_1621727_+,NA|87aa|down_1|NC_014150.1_1621727_1621988_+,NA|116aa|down_2|NC_014150.1_1622005_1622353_+,NA|70aa|down_3|NC_014150.1_1622339_1622549_+	NA|432aa|up_9|NC_014150.1_1605444_1606740_-	PRK00077, eno, enolase; Provisional	NA|249aa|up_8|NC_014150.1_1606993_1607740_-	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|520aa|up_7|NC_014150.1_1607872_1609432_+	NA	NA|151aa|up_6|NC_014150.1_1609843_1610296_-	cd12208, septicolysin_like, putative septicolysin, cholesterol-dependent cytolysin family and related proteins	NA|147aa|up_5|NC_014150.1_1610414_1610855_+	NA	NA|281aa|up_4|NC_014150.1_1610949_1611792_+	NA	NA|551aa|up_3|NC_014150.1_1612065_1613718_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|265aa|up_2|NC_014150.1_1614374_1615169_+	NA	NA|294aa|up_1|NC_014150.1_1616814_1617696_+	NA	NA|205aa|up_0|NC_014150.1_1620023_1620638_+	COG3179, COG3179, Predicted chitinase [General function prediction only]	NA|265aa|down_0|NC_014150.1_1620932_1621727_+	NA	NA|87aa|down_1|NC_014150.1_1621727_1621988_+	NA	NA|116aa|down_2|NC_014150.1_1622005_1622353_+	NA	NA|70aa|down_3|NC_014150.1_1622339_1622549_+	NA	NA|614aa|down_4|NC_014150.1_1622766_1624608_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|617aa|down_5|NC_014150.1_1624880_1626731_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|39aa|down_6|NC_014150.1_1626802_1626919_-	pfam01934, DUF86, Protein of unknown function DUF86	NA|485aa|down_7|NC_014150.1_1627072_1628527_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|216aa|down_8|NC_014150.1_1628531_1629179_+	COG0344, COG0344, Predicted membrane protein [Function unknown]	NA|139aa|down_9|NC_014150.1_1629314_1629731_+	pfam12158, DUF3592, Protein of unknown function (DUF3592)
GCF_000092845.1_ASM9284v1	NC_014150	Brachyspira murdochii DSM 12563, complete sequence	4	1715561-1715747	3	PILER-CR	no		DinG,WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh	Orphan	TAGAAAATGATGATAAAGAAGATAAAAAAGAA	32	0	0	NA	NA	NA	2	2	Orphan	DinG,WYL,cas4,csa3,cas6,cas8b2,cas7,cas5,cas3,cas1,cas2,DEDDh	NA|133aa|up_9|NC_014150.1_1703422_1703821_-,NA|105aa|up_8|NC_014150.1_1703834_1704149_-,NA|208aa|up_7|NC_014150.1_1704386_1705010_-,NA|64aa|up_6|NC_014150.1_1705096_1705288_-,NA|331aa|up_1|NC_014150.1_1711626_1712619_-,NA	NA|133aa|up_9|NC_014150.1_1703422_1703821_-	NA	NA|105aa|up_8|NC_014150.1_1703834_1704149_-	NA	NA|208aa|up_7|NC_014150.1_1704386_1705010_-	NA	NA|64aa|up_6|NC_014150.1_1705096_1705288_-	NA	NA|371aa|up_5|NC_014150.1_1705828_1706941_-	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|466aa|up_4|NC_014150.1_1707232_1708630_+	pfam13569, DUF4132, Domain of unknown function (DUF4132)	NA|427aa|up_3|NC_014150.1_1708850_1710131_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|432aa|up_2|NC_014150.1_1710338_1711634_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|331aa|up_1|NC_014150.1_1711626_1712619_-	NA	NA|617aa|up_0|NC_014150.1_1712825_1714676_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|264aa|down_0|NC_014150.1_1716647_1717439_+	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|351aa|down_1|NC_014150.1_1717913_1718966_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|227aa|down_2|NC_014150.1_1718946_1719627_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|323aa|down_3|NC_014150.1_1719682_1720651_+	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	NA|267aa|down_4|NC_014150.1_1720742_1721543_+	cd13596, PBP2_lipoprotein_GmpC, The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; contains the type 2 periplasmic-binding protein fold	NA|266aa|down_5|NC_014150.1_1721568_1722366_+	cd13596, PBP2_lipoprotein_GmpC, The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; contains the type 2 periplasmic-binding protein fold	NA|266aa|down_6|NC_014150.1_1722383_1723181_+	cd13596, PBP2_lipoprotein_GmpC, The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; contains the type 2 periplasmic-binding protein fold	NA|267aa|down_7|NC_014150.1_1723284_1724085_+	cd13596, PBP2_lipoprotein_GmpC, The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; contains the type 2 periplasmic-binding protein fold	NA|270aa|down_8|NC_014150.1_1724239_1725049_+	cd13596, PBP2_lipoprotein_GmpC, The periplasmic substrate-binding domain of the membrane-associated lipoprotein-9 GmpC; contains the type 2 periplasmic-binding protein fold	NA|542aa|down_9|NC_014150.1_1725149_1726775_-	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]
