assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000091565.1_ASM9156v1	NC_013961	Erwinia amylovora CFBP1430, complete genome	1	355132-355217	1	CRISPRCasFinder	no		cas3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Orphan	AGCCCGCGTCCGCGCGGGGAGCTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA	NA|482aa|up_9|NC_013961.1_344901_346347_+	PRK10735, tldD, protease TldD; Provisional	NA|306aa|up_8|NC_013961.1_346450_347368_-	PRK10632, PRK10632, HTH-type transcriptional activator AaeR	NA|68aa|up_7|NC_013961.1_347645_347849_+	PRK11594, PRK11594, efflux system membrane protein; Provisional	NA|311aa|up_6|NC_013961.1_347856_348789_+	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|653aa|up_5|NC_013961.1_348802_350761_+	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional	NA|90aa|up_4|NC_013961.1_350973_351243_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|88aa|up_3|NC_013961.1_351354_351618_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|157aa|up_2|NC_013961.1_352113_352584_-	PRK05066, PRK05066, transcriptional regulator ArgR	NA|312aa|up_1|NC_013961.1_353028_353964_+	PRK05086, PRK05086, malate dehydrogenase; Provisional	NA|354aa|up_0|NC_013961.1_354012_355074_-	PRK10898, PRK10898, serine endoprotease DegS	NA|133aa|down_0|NC_013961.1_356713_357112_-	PRK11677, PRK11677, DUF1043 family protein	NA|376aa|down_1|NC_013961.1_357288_358416_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|143aa|down_2|NC_013961.1_358660_359089_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|down_3|NC_013961.1_359104_359497_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|214aa|down_4|NC_013961.1_359805_360447_+	PRK09481, sspA, stringent starvation protein A; Provisional	NA|166aa|down_5|NC_013961.1_360451_360949_+	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional	NA|586aa|down_6|NC_013961.1_361092_362850_-	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	NA|1845aa|down_7|NC_013961.1_362888_368423_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|780aa|down_8|NC_013961.1_369409_371749_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|242aa|down_9|NC_013961.1_372538_373264_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional
GCF_000091565.1_ASM9156v1	NC_013961	Erwinia amylovora CFBP1430, complete genome	2	2891676-2892004	1,2	CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type I-E	TNTCTAANCTGCCTGTACGGCAGTGAAC,TCTAAGCTGCCTGTACGGCAGTGAAC	28,26	0	0	NA	NA	I-F:I-F	5,5	5	TypeI-E	cas3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|63aa|up_1|NC_013961.1_2890011_2890200_-,NA|157aa|down_7|NC_013961.1_2900830_2901301_+	NA|265aa|up_9|NC_013961.1_2883002_2883797_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|285aa|up_8|NC_013961.1_2883812_2884667_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|127aa|up_7|NC_013961.1_2884730_2885111_+	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|257aa|up_6|NC_013961.1_2885178_2885949_-	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|309aa|up_5|NC_013961.1_2885945_2886872_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|221aa|up_4|NC_013961.1_2887104_2887767_+	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|179aa|up_3|NC_013961.1_2887866_2888403_-	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|427aa|up_2|NC_013961.1_2888656_2889937_+	PRK07049, PRK07049, cystathionine gamma-synthase family protein	NA|63aa|up_1|NC_013961.1_2890011_2890200_-	NA	NA|226aa|up_0|NC_013961.1_2890263_2890941_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|537aa|down_0|NC_013961.1_2892186_2893797_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|down_1|NC_013961.1_2893977_2894325_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|286aa|down_2|NC_013961.1_2894425_2895283_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|268aa|down_3|NC_013961.1_2895304_2896108_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|121aa|down_4|NC_013961.1_2896195_2896558_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|down_5|NC_013961.1_2896729_2899327_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|250aa|down_6|NC_013961.1_2900084_2900834_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|157aa|down_7|NC_013961.1_2900830_2901301_+	NA	cas2|95aa|down_8|NC_013961.1_2903661_2903946_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_9|NC_013961.1_2903947_2904865_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI
GCF_000091565.1_ASM9156v1	NC_013961	Erwinia amylovora CFBP1430, complete genome	3	2901468-2903573	3,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type I-E	CGGTTTATCCCCGCATACGCGGGGAACAC,CGGTTTATCCCCGCATACGCGGGGAACAC,CGGTTTATCCCCGCATACGCGGGGAACAC	29,29,29	1	1	2902780-2902811	NC_013961.1_2390313-2390344	I-E:I-E:I-E	34,34,33	34	TypeI-E	cas3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|63aa|up_9|NC_013961.1_2890011_2890200_-,NA|157aa|up_0|NC_013961.1_2900830_2901301_+,NA	NA|63aa|up_9|NC_013961.1_2890011_2890200_-	NA	NA|226aa|up_8|NC_013961.1_2890263_2890941_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|537aa|up_7|NC_013961.1_2892186_2893797_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|up_6|NC_013961.1_2893977_2894325_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|286aa|up_5|NC_013961.1_2894425_2895283_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|268aa|up_4|NC_013961.1_2895304_2896108_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|121aa|up_3|NC_013961.1_2896195_2896558_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_2|NC_013961.1_2896729_2899327_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|250aa|up_1|NC_013961.1_2900084_2900834_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|157aa|up_0|NC_013961.1_2900830_2901301_+	NA	cas2|95aa|down_0|NC_013961.1_2903661_2903946_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NC_013961.1_2903947_2904865_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|201aa|down_2|NC_013961.1_2904904_2905507_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|219aa|down_3|NC_013961.1_2905503_2906160_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|365aa|down_4|NC_013961.1_2906162_2907257_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|157aa|down_5|NC_013961.1_2907253_2907724_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NC_013961.1_2907707_2909231_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|878aa|down_7|NC_013961.1_2909227_2911861_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|270aa|down_8|NC_013961.1_2912174_2912984_-	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	NA|268aa|down_9|NC_013961.1_2913036_2913840_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_000091565.1_ASM9156v1	NC_013961	Erwinia amylovora CFBP1430, complete genome	4	2914480-2916704	4,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type I-E	CGGTTTATCCCCGCTCACGCGGGGAACAC,CGGTTTATCCCCGCTCACGCGGGGAACACN,CGGTTTATCCCCGCTCACGCGGGGAACAC	29,30,29	0	0	NA	NA	I-E:I-E:I-E	36,36,35	36	TypeI-E	cas3,RT,DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA	cas1|306aa|up_9|NC_013961.1_2903947_2904865_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|201aa|up_8|NC_013961.1_2904904_2905507_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|219aa|up_7|NC_013961.1_2905503_2906160_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|365aa|up_6|NC_013961.1_2906162_2907257_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|157aa|up_5|NC_013961.1_2907253_2907724_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_4|NC_013961.1_2907707_2909231_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|878aa|up_3|NC_013961.1_2909227_2911861_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|270aa|up_2|NC_013961.1_2912174_2912984_-	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	NA|268aa|up_1|NC_013961.1_2913036_2913840_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|187aa|up_0|NC_013961.1_2913917_2914478_-	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|261aa|down_0|NC_013961.1_2917210_2917993_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|402aa|down_1|NC_013961.1_2917994_2919200_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|500aa|down_2|NC_013961.1_2919162_2920662_-	PRK07638, PRK07638, acyl-CoA synthetase; Validated	NA|145aa|down_3|NC_013961.1_2920661_2921096_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|329aa|down_4|NC_013961.1_2921142_2922129_+	cd05282, ETR_like, 2-enoyl thioester reductase-like	NA|204aa|down_5|NC_013961.1_2922169_2922781_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|206aa|down_6|NC_013961.1_2922719_2923337_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|225aa|down_7|NC_013961.1_2923333_2924008_-	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|234aa|down_8|NC_013961.1_2924021_2924723_-	pfam00106, adh_short, short chain dehydrogenase	NA|476aa|down_9|NC_013961.1_2924830_2926258_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed
