assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000091545.1_ASM9154v1	NC_006461	Thermus thermophilus HB8 chromosome 1, complete sequence	1	872101-873200	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal	Orphan	GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	13,14,14	14	Orphan	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA,NA	NA|166aa|up_9|NC_006461.1_861760_862258_-	smart00909, Germane, Sporulation and spore germination	NA|385aa|up_8|NC_006461.1_862254_863409_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|145aa|up_7|NC_006461.1_863405_863840_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|202aa|up_6|NC_006461.1_864547_865153_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|332aa|up_5|NC_006461.1_865264_866260_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|391aa|up_4|NC_006461.1_866260_867433_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|96aa|up_3|NC_006461.1_867478_867766_+	pfam02033, RBFA, Ribosome-binding factor A	NA|133aa|up_2|NC_006461.1_867744_868143_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|415aa|up_1|NC_006461.1_868152_869397_+	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]	NA|745aa|up_0|NC_006461.1_869398_871633_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|318aa|down_0|NC_006461.1_873210_874164_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|371aa|down_1|NC_006461.1_874921_876034_-	pfam01875, Memo, Memo-like protein	NA|432aa|down_2|NC_006461.1_875987_877283_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|204aa|down_3|NC_006461.1_877283_877895_+	pfam01121, CoaE, Dephospho-CoA kinase	NA|168aa|down_4|NC_006461.1_877863_878367_-	pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase	NA|172aa|down_5|NC_006461.1_878570_879086_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|161aa|down_6|NC_006461.1_879086_879569_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|497aa|down_7|NC_006461.1_879579_881070_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|433aa|down_8|NC_006461.1_881128_882427_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|71aa|down_9|NC_006461.1_882423_882636_-	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]
GCF_000091545.1_ASM9154v1	NC_006461	Thermus thermophilus HB8 chromosome 1, complete sequence	2	874397-874734	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal	Orphan	GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	3,4,4	4	Orphan	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA,NA	NA|385aa|up_9|NC_006461.1_862254_863409_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|145aa|up_8|NC_006461.1_863405_863840_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|202aa|up_7|NC_006461.1_864547_865153_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|332aa|up_6|NC_006461.1_865264_866260_+	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|391aa|up_5|NC_006461.1_866260_867433_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|96aa|up_4|NC_006461.1_867478_867766_+	pfam02033, RBFA, Ribosome-binding factor A	NA|133aa|up_3|NC_006461.1_867744_868143_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|415aa|up_2|NC_006461.1_868152_869397_+	COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]	NA|745aa|up_1|NC_006461.1_869398_871633_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|318aa|up_0|NC_006461.1_873210_874164_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|371aa|down_0|NC_006461.1_874921_876034_-	pfam01875, Memo, Memo-like protein	NA|432aa|down_1|NC_006461.1_875987_877283_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|204aa|down_2|NC_006461.1_877283_877895_+	pfam01121, CoaE, Dephospho-CoA kinase	NA|168aa|down_3|NC_006461.1_877863_878367_-	pfam02660, G3P_acyltransf, Glycerol-3-phosphate acyltransferase	NA|172aa|down_4|NC_006461.1_878570_879086_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|161aa|down_5|NC_006461.1_879086_879569_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|497aa|down_6|NC_006461.1_879579_881070_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|433aa|down_7|NC_006461.1_881128_882427_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|71aa|down_8|NC_006461.1_882423_882636_-	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|74aa|down_9|NC_006461.1_882625_882847_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	1	18044-18305	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Orphan	GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC,GTCGCAATCCCCTTACGGGGCTCAATCCCTTGCAAC,GGGTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36,38	0	0	NA	NA	III-A:III-A:III-A	3,3,3	3	Orphan	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA|265aa|up_1|NC_006462.1_16327_17122_+,NA|232aa|down_7|NC_006462.1_33582_34278_+,NA|529aa|down_8|NC_006462.1_34274_35861_+	NA|254aa|up_9|NC_006462.1_8183_8945_-	PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional	NA|315aa|up_8|NC_006462.1_8944_9889_-	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|118aa|up_7|NC_006462.1_9924_10278_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|152aa|up_6|NC_006462.1_10274_10730_-	cd03446, MaoC_like, MoaC_like    Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain	NA|264aa|up_5|NC_006462.1_10713_11505_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|379aa|up_4|NC_006462.1_12047_13184_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|192aa|up_3|NC_006462.1_13170_13746_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|388aa|up_2|NC_006462.1_14193_15357_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|265aa|up_1|NC_006462.1_16327_17122_+	NA	NA|66aa|up_0|NC_006462.1_17143_17341_-	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]	NA|265aa|down_0|NC_006462.1_18730_19525_+	cd10802, YdjC_TTHB029_like, Thermus thermophiles TTHB029 and similar proteins	NA|575aa|down_1|NC_006462.1_20793_22518_+	PRK10150, PRK10150, beta-D-glucuronidase; Provisional	NA|794aa|down_2|NC_006462.1_22529_24911_+	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|421aa|down_3|NC_006462.1_26954_28217_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|872aa|down_4|NC_006462.1_28562_31178_-	COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	NA|425aa|down_5|NC_006462.1_31850_33125_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|150aa|down_6|NC_006462.1_33124_33574_+	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones	NA|232aa|down_7|NC_006462.1_33582_34278_+	NA	NA|529aa|down_8|NC_006462.1_34274_35861_+	NA	NA|441aa|down_9|NC_006462.1_36194_37517_-	PRK01077, PRK01077, cobyrinate a,c-diamide synthase
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	2	113544-113809	2	CRT	no	c2c9_V-U4,csa3,csx1,cas1	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Type I-A	CCCCAAGTCTTCCGATAC	18	0	0	NA	NA	NA	4	4	TypeI-A	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA|140aa|up_8|NC_006462.1_105745_106165_+,NA|56aa|down_5|NC_006462.1_120082_120250_+,NA|184aa|down_6|NC_006462.1_120480_121032_+	NA|534aa|up_9|NC_006462.1_104029_105631_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|140aa|up_8|NC_006462.1_105745_106165_+	NA	NA|160aa|up_7|NC_006462.1_106161_106641_+	TIGR02523, probable_type-4_fimbrial_biogenesis_protein, type IV pilus modification protein PilV	NA|310aa|up_6|NC_006462.1_106652_107582_+	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]	NA|624aa|up_5|NC_006462.1_107594_109466_+	pfam16241, DUF4900, Domain of unknown function (DUF4900)	c2c9_V-U4|117aa|up_4|NC_006462.1_109631_109982_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|101aa|up_3|NC_006462.1_109972_110275_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|46aa|up_2|NC_006462.1_110262_110400_-	COG2452, COG2452, Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]	NA|296aa|up_1|NC_006462.1_111456_112344_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|323aa|up_0|NC_006462.1_112340_113309_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|464aa|down_0|NC_006462.1_113819_115211_-	pfam10134, RPA, Replication initiator protein A	NA|862aa|down_1|NC_006462.1_115280_117866_-	TIGR02693, Arsenite_oxidase_subunit_AioA, arsenite oxidase, large subunit	NA|161aa|down_2|NC_006462.1_117877_118360_-	TIGR02694, Arsenite_oxidase_subunit_AioB, arsenite oxidase, small subunit	NA|407aa|down_3|NC_006462.1_118437_119658_-	pfam00872, Transposase_mut, Transposase, Mutator family	csa3|113aa|down_4|NC_006462.1_119723_120062_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|56aa|down_5|NC_006462.1_120082_120250_+	NA	NA|184aa|down_6|NC_006462.1_120480_121032_+	NA	NA|177aa|down_7|NC_006462.1_121041_121572_+	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|132aa|down_8|NC_006462.1_121928_122324_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|149aa|down_9|NC_006462.1_122440_122887_-	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	3	133766-133955	2	CRISPRCasFinder	no	csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36	0	0	NA	NA	III-A	2	2	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA|80aa|up_0|NC_006462.1_133474_133714_-,NA|637aa|down_9|NC_006462.1_147019_148930_+	NA|104aa|up_9|NC_006462.1_124188_124500_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|49aa|up_8|NC_006462.1_124593_124740_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|415aa|up_7|NC_006462.1_124776_126021_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|490aa|up_6|NC_006462.1_125926_127396_-	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|225aa|up_5|NC_006462.1_127397_128072_-	cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	NA|496aa|up_4|NC_006462.1_128206_129694_+	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|511aa|up_3|NC_006462.1_129693_131226_+	PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase	csx1|402aa|up_2|NC_006462.1_131245_132451_+	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	cas1|316aa|up_1|NC_006462.1_132454_133402_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	NA|80aa|up_0|NC_006462.1_133474_133714_-	NA	NA|318aa|down_0|NC_006462.1_133965_134919_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|91aa|down_1|NC_006462.1_136128_136401_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas10|806aa|down_2|NC_006462.1_136456_138874_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm2gr11|135aa|down_3|NC_006462.1_138874_139279_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|242aa|down_4|NC_006462.1_139290_140016_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|292aa|down_5|NC_006462.1_140025_140901_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|385aa|down_6|NC_006462.1_140897_142052_+	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csx1|465aa|down_7|NC_006462.1_142062_143457_+	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	NA|318aa|down_8|NC_006462.1_144853_145807_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|637aa|down_9|NC_006462.1_147019_148930_+	NA
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	4	135156-136099	2,3,3	PILER-CR,CRISPRCasFinder,CRT	no	csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Type III-B,Type III-C,Type III-A,Type III-D	GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	12,12,12	12	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA|80aa|up_1|NC_006462.1_133474_133714_-,NA|637aa|down_8|NC_006462.1_147019_148930_+,NA|174aa|down_9|NC_006462.1_148900_149422_-	NA|49aa|up_9|NC_006462.1_124593_124740_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|415aa|up_8|NC_006462.1_124776_126021_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|490aa|up_7|NC_006462.1_125926_127396_-	COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism]	NA|225aa|up_6|NC_006462.1_127397_128072_-	cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	NA|496aa|up_5|NC_006462.1_128206_129694_+	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|511aa|up_4|NC_006462.1_129693_131226_+	PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase	csx1|402aa|up_3|NC_006462.1_131245_132451_+	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	cas1|316aa|up_2|NC_006462.1_132454_133402_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	NA|80aa|up_1|NC_006462.1_133474_133714_-	NA	NA|318aa|up_0|NC_006462.1_133965_134919_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|91aa|down_0|NC_006462.1_136128_136401_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas10|806aa|down_1|NC_006462.1_136456_138874_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm2gr11|135aa|down_2|NC_006462.1_138874_139279_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|242aa|down_3|NC_006462.1_139290_140016_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|292aa|down_4|NC_006462.1_140025_140901_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|385aa|down_5|NC_006462.1_140897_142052_+	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csx1|465aa|down_6|NC_006462.1_142062_143457_+	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	NA|318aa|down_7|NC_006462.1_144853_145807_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|637aa|down_8|NC_006462.1_147019_148930_+	NA	NA|174aa|down_9|NC_006462.1_148900_149422_-	NA
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	5	144129-144843	3,4,4	PILER-CR,CRISPRCasFinder,CRT	no	csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Type III-C,Type III-A, Type III-B?,Type III-D,Type III-B	GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36,36	0	0	NA	NA	III-A:III-A:III-A	8,9,9	9	TypeIII-C,TypeIII-A,TypeIII-B?,TypeIII-D,TypeIII-B	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA|80aa|up_8|NC_006462.1_133474_133714_-,NA|637aa|down_1|NC_006462.1_147019_148930_+,NA|174aa|down_2|NC_006462.1_148900_149422_-,NA|240aa|down_3|NC_006462.1_149426_150146_-,NA|322aa|down_4|NC_006462.1_150114_151080_-,NA|137aa|down_5|NC_006462.1_151072_151483_-	cas1|316aa|up_9|NC_006462.1_132454_133402_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	NA|80aa|up_8|NC_006462.1_133474_133714_-	NA	NA|318aa|up_7|NC_006462.1_133965_134919_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|91aa|up_6|NC_006462.1_136128_136401_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas10|806aa|up_5|NC_006462.1_136456_138874_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm2gr11|135aa|up_4|NC_006462.1_138874_139279_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|242aa|up_3|NC_006462.1_139290_140016_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|292aa|up_2|NC_006462.1_140025_140901_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|385aa|up_1|NC_006462.1_140897_142052_+	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csx1|465aa|up_0|NC_006462.1_142062_143457_+	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	NA|318aa|down_0|NC_006462.1_144853_145807_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|637aa|down_1|NC_006462.1_147019_148930_+	NA	NA|174aa|down_2|NC_006462.1_148900_149422_-	NA	NA|240aa|down_3|NC_006462.1_149426_150146_-	NA	NA|322aa|down_4|NC_006462.1_150114_151080_-	NA	NA|137aa|down_5|NC_006462.1_151072_151483_-	NA	cas10|585aa|down_6|NC_006462.1_151609_153364_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr3gr5|362aa|down_7|NC_006462.1_153353_154439_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr1gr7|396aa|down_8|NC_006462.1_154435_155623_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr4gr7|287aa|down_9|NC_006462.1_155638_156499_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	6	146042-146983	5,5	CRISPRCasFinder,CRT	no	csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Type III-C,Type III-A, Type III-B?,Type III-D,Type III-B	GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC,GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC	36,36	0	0	NA	NA	III-A:III-A	12,12	12	TypeIII-C,TypeIII-A,TypeIII-B?,TypeIII-D,TypeIII-B	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA|80aa|up_9|NC_006462.1_133474_133714_-,NA|637aa|down_0|NC_006462.1_147019_148930_+,NA|174aa|down_1|NC_006462.1_148900_149422_-,NA|240aa|down_2|NC_006462.1_149426_150146_-,NA|322aa|down_3|NC_006462.1_150114_151080_-,NA|137aa|down_4|NC_006462.1_151072_151483_-	NA|80aa|up_9|NC_006462.1_133474_133714_-	NA	NA|318aa|up_8|NC_006462.1_133965_134919_-	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|91aa|up_7|NC_006462.1_136128_136401_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas10|806aa|up_6|NC_006462.1_136456_138874_+	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csm2gr11|135aa|up_5|NC_006462.1_138874_139279_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|242aa|up_4|NC_006462.1_139290_140016_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|292aa|up_3|NC_006462.1_140025_140901_+	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm5gr7|385aa|up_2|NC_006462.1_140897_142052_+	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csx1|465aa|up_1|NC_006462.1_142062_143457_+	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	NA|318aa|up_0|NC_006462.1_144853_145807_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|637aa|down_0|NC_006462.1_147019_148930_+	NA	NA|174aa|down_1|NC_006462.1_148900_149422_-	NA	NA|240aa|down_2|NC_006462.1_149426_150146_-	NA	NA|322aa|down_3|NC_006462.1_150114_151080_-	NA	NA|137aa|down_4|NC_006462.1_151072_151483_-	NA	cas10|585aa|down_5|NC_006462.1_151609_153364_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	cmr3gr5|362aa|down_6|NC_006462.1_153353_154439_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr1gr7|396aa|down_7|NC_006462.1_154435_155623_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr4gr7|287aa|down_8|NC_006462.1_155638_156499_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|115aa|down_9|NC_006462.1_156502_156847_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	7	189507-190947	6,6,4	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Type I-E	CGGTCCATCCCCACGTGCGTGGGGACTAC,CGGTCCATCCCCACGTGCGTGGGGACTAC,CGGTCCATCCCCACGTGCGTGGGGACTAC	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	23,23,23	23	TypeI-E	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA|232aa|up_1|NC_006462.1_187762_188458_-,NA	NA|369aa|up_9|NC_006462.1_167972_169079_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|566aa|up_8|NC_006462.1_169094_170792_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|359aa|up_7|NC_006462.1_170801_171878_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|165aa|up_6|NC_006462.1_173361_173856_+	COG4719, COG4719, Uncharacterized protein conserved in bacteria [Function unknown]	NA|889aa|up_5|NC_006462.1_173869_176536_+	COG1470, COG1470, Predicted membrane protein [Function unknown]	NA|902aa|up_4|NC_006462.1_176641_179347_+	pfam01345, DUF11, Domain of unknown function DUF11	NA|1796aa|up_3|NC_006462.1_179343_184731_+	COG4625, COG4625, Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain [Function unknown]	NA|997aa|up_2|NC_006462.1_184727_187718_+	TIGR01451, unnamed_protein_product, conserved repeat domain	NA|232aa|up_1|NC_006462.1_187762_188458_-	NA	NA|315aa|up_0|NC_006462.1_188502_189447_-	pfam01555, N6_N4_Mtase, DNA methylase	WYL|330aa|down_0|NC_006462.1_191137_192127_+	pfam13280, WYL, WYL domain	cas3|921aa|down_1|NC_006462.1_192123_194886_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|500aa|down_2|NC_006462.1_194944_196444_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|170aa|down_3|NC_006462.1_196440_196950_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|372aa|down_4|NC_006462.1_196946_198062_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|249aa|down_5|NC_006462.1_198063_198810_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|212aa|down_6|NC_006462.1_198796_199432_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|326aa|down_7|NC_006462.1_199441_200419_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|126aa|down_8|NC_006462.1_200372_200750_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|251aa|down_9|NC_006462.1_202081_202834_-	pfam03746, LamB_YcsF, LamB/YcsF family
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	8	200811-202078	5,7,7	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Type I-E	GTAGTCCCCACGCGTGTGGGGATGGACCG,GTAGTCCCCACGCGTGTGGGGATGGACCG,GTAGTCCCCACGCGTGTGGGGATGGACCG	29,29,29	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	19,20,20	20	TypeI-E	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA,NA	NA|315aa|up_9|NC_006462.1_188502_189447_-	pfam01555, N6_N4_Mtase, DNA methylase	WYL|330aa|up_8|NC_006462.1_191137_192127_+	pfam13280, WYL, WYL domain	cas3|921aa|up_7|NC_006462.1_192123_194886_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|500aa|up_6|NC_006462.1_194944_196444_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|170aa|up_5|NC_006462.1_196440_196950_+	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas7|372aa|up_4|NC_006462.1_196946_198062_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|249aa|up_3|NC_006462.1_198063_198810_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|212aa|up_2|NC_006462.1_198796_199432_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|326aa|up_1|NC_006462.1_199441_200419_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|126aa|up_0|NC_006462.1_200372_200750_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|251aa|down_0|NC_006462.1_202081_202834_-	pfam03746, LamB_YcsF, LamB/YcsF family	NA|282aa|down_1|NC_006462.1_202861_203707_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|762aa|down_2|NC_006462.1_203703_205989_-	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	NA|411aa|down_3|NC_006462.1_206339_207572_+	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily	NA|856aa|down_4|NC_006462.1_207849_210417_+	PRK13800, PRK13800, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|127aa|down_5|NC_006462.1_212350_212731_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|152aa|down_6|NC_006462.1_212787_213243_-	pfam13470, PIN_3, PIN domain	NA|81aa|down_7|NC_006462.1_213223_213466_-	TIGR01439, Uncharacterized_protein_Mb2626, looped-hinge helix DNA binding domain, AbrB family	NA|230aa|down_8|NC_006462.1_213741_214431_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|134aa|down_9|NC_006462.1_215118_215520_+	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	9	227324-228238	8,8,6	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,WYL,cas8b5,cas5,cas3,cas6	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Unclear	GTTTCAATCCTCTACGAGGCTGACGGGGTTTGCAACG,GTTTCAATCCTCTACGAGGCTGACGGGGTTTGCAAC,GTTTCAATCCTCTACGAGGCTGACGGGGTTTGCAAC	37,36,36	0	0	NA	NA	NA:NA:NA	12,12,11	12	Unclear	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	NA|62aa|up_7|NC_006462.1_220782_220968_+,NA|105aa|up_5|NC_006462.1_223065_223380_-,cas5|305aa|down_5|NC_006462.1_234738_235653_+	NA|206aa|up_9|NC_006462.1_219417_220035_+	PRK13920, PRK13920, putative anti-sigmaE protein; Provisional	NA|207aa|up_8|NC_006462.1_220113_220734_+	pfam13668, Ferritin_2, Ferritin-like domain	NA|62aa|up_7|NC_006462.1_220782_220968_+	NA	NA|395aa|up_6|NC_006462.1_221277_222462_-	COG3488, COG3488, Predicted thiol oxidoreductase [Energy production and conversion]	NA|105aa|up_5|NC_006462.1_223065_223380_-	NA	NA|259aa|up_4|NC_006462.1_223369_224146_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|342aa|up_3|NC_006462.1_224138_225164_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|302aa|up_2|NC_006462.1_225267_226173_-	cd01149, HutB, Hemin binding protein HutB	NA|207aa|up_1|NC_006462.1_226169_226790_-	pfam11866, DUF3386, Protein of unknown function (DUF3386)	NA|103aa|up_0|NC_006462.1_226782_227091_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	cas2|95aa|down_0|NC_006462.1_228476_228761_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|down_1|NC_006462.1_228757_229735_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas4|195aa|down_2|NC_006462.1_229725_230310_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	WYL|328aa|down_3|NC_006462.1_230675_231659_+	pfam13280, WYL, WYL domain	cas8b5|767aa|down_4|NC_006462.1_231676_233977_+	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50	cas5|305aa|down_5|NC_006462.1_234738_235653_+	NA	cas3|818aa|down_6|NC_006462.1_235619_238073_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|265aa|down_7|NC_006462.1_238072_238867_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|407aa|down_8|NC_006462.1_239305_240526_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|138aa|down_9|NC_006462.1_240848_241262_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
GCF_000091545.1_ASM9154v1	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	10	239108-239211	9	CRISPRCasFinder	no	cas2,cas1,cas4,WYL,cas8b5,cas5,cas3,cas6	c2c9_V-U4,csa3,csx1,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5,cas6	Unclear	GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGA	33	0	0	NA	NA	NA	1	1	Unclear	cas6,cas2,DEDDh,csa3,cas3,Cas9_archaeal,c2c9_V-U4,csx1,cas1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cmr3gr5,cmr1gr7,cmr4gr7,cmr5gr11,cmr6gr7,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas4,cas8b5	cas5|305aa|up_2|NC_006462.1_234738_235653_+,NA|72aa|down_2|NC_006462.1_241258_241474_-,NA|305aa|down_3|NC_006462.1_241795_242710_-,NA|61aa|down_6|NC_006462.1_245273_245456_-	NA|207aa|up_9|NC_006462.1_226169_226790_-	pfam11866, DUF3386, Protein of unknown function (DUF3386)	NA|103aa|up_8|NC_006462.1_226782_227091_-	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	cas2|95aa|up_7|NC_006462.1_228476_228761_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|up_6|NC_006462.1_228757_229735_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas4|195aa|up_5|NC_006462.1_229725_230310_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	WYL|328aa|up_4|NC_006462.1_230675_231659_+	pfam13280, WYL, WYL domain	cas8b5|767aa|up_3|NC_006462.1_231676_233977_+	PRK03918, PRK03918, DNA double-strand break repair ATPase Rad50	cas5|305aa|up_2|NC_006462.1_234738_235653_+	NA	cas3|818aa|up_1|NC_006462.1_235619_238073_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|265aa|up_0|NC_006462.1_238072_238867_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|407aa|down_0|NC_006462.1_239305_240526_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|138aa|down_1|NC_006462.1_240848_241262_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|72aa|down_2|NC_006462.1_241258_241474_-	NA	NA|305aa|down_3|NC_006462.1_241795_242710_-	NA	NA|321aa|down_4|NC_006462.1_243209_244172_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|280aa|down_5|NC_006462.1_244423_245263_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|61aa|down_6|NC_006462.1_245273_245456_-	NA	NA|259aa|down_7|NC_006462.1_245474_246251_-	TIGR03220, 2-hydroxypenta-24-dienoate_hydratase, 2-oxopent-4-enoate hydratase	NA|503aa|down_8|NC_006462.1_246258_247767_-	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|232aa|down_9|NC_006462.1_247777_248473_-	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
