assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	1	144837-144915	1	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|NC_013315.1_156338_157016_+	NA|114aa|up_9|NC_013315.1_121824_122166_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_8|NC_013315.1_122285_123119_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_7|NC_013315.1_123106_123973_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_6|NC_013315.1_123966_124770_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_5|NC_013315.1_124801_125533_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|131aa|up_4|NC_013315.1_126111_126504_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NC_013315.1_126962_127715_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NC_013315.1_139886_141071_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NC_013315.1_141443_143795_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NC_013315.1_143816_144356_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NC_013315.1_152024_152864_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NC_013315.1_152860_154042_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NC_013315.1_154345_155248_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NC_013315.1_155269_156349_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NC_013315.1_156338_157016_+	NA	NA|72aa|down_5|NC_013315.1_157058_157274_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NC_013315.1_157302_158382_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NC_013315.1_158381_159134_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NC_013315.1_159134_159692_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NC_013315.1_159861_161208_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	2	716756-716898	2	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTAATGAAGATGGTATTATGCA	23	0	0	NA	NA	NA	2	2	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|397aa|up_8|NC_013315.1_698082_699273_+,NA|61aa|down_1|NC_013315.1_718074_718257_+,NA|101aa|down_6|NC_013315.1_728980_729283_-	NA|652aa|up_9|NC_013315.1_696111_698067_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|397aa|up_8|NC_013315.1_698082_699273_+	NA	NA|125aa|up_7|NC_013315.1_700406_700781_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|286aa|up_6|NC_013315.1_700782_701640_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|213aa|up_5|NC_013315.1_701642_702281_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|245aa|up_4|NC_013315.1_703254_703989_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|419aa|up_3|NC_013315.1_705130_706387_+	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	NA|398aa|up_2|NC_013315.1_706449_707643_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|127aa|up_1|NC_013315.1_707849_708230_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|185aa|up_0|NC_013315.1_709138_709693_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|167aa|down_0|NC_013315.1_717245_717746_+	TIGR01593, Uncharacterized_protein_CPE0383, toxin secretion/phage lysis holin	NA|61aa|down_1|NC_013315.1_718074_718257_+	NA	NA|2711aa|down_2|NC_013315.1_718473_726606_+	pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain	NA|187aa|down_3|NC_013315.1_726940_727501_-	pfam12569, NARP1, NMDA receptor-regulated protein 1	NA|82aa|down_4|NC_013315.1_728037_728283_+	pfam11731, Cdd1, Pathogenicity locus	NA|90aa|down_5|NC_013315.1_728499_728769_-	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|101aa|down_6|NC_013315.1_728980_729283_-	NA	NA|246aa|down_7|NC_013315.1_729802_730540_-	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown]	NA|254aa|down_8|NC_013315.1_730551_731313_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|305aa|down_9|NC_013315.1_731312_732227_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	3	999537-999614	3	CRISPRCasFinder	no	cas14j	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AAAAAATAAGAAAGTTTATAAATA	24	0	0	NA	NA	NA	1	1	TypeV	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA	NA|527aa|up_9|NC_013315.1_984176_985757_+	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism]	cas14j|373aa|up_8|NC_013315.1_986502_987621_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|up_7|NC_013315.1_987904_988351_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|348aa|up_6|NC_013315.1_988371_989415_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|387aa|up_5|NC_013315.1_990185_991346_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|377aa|up_4|NC_013315.1_991347_992478_+	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit	NA|481aa|up_3|NC_013315.1_992506_993949_+	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins	NA|807aa|up_2|NC_013315.1_993962_996383_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|622aa|up_1|NC_013315.1_996387_998253_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|218aa|up_0|NC_013315.1_998497_999151_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|492aa|down_0|NC_013315.1_999788_1001264_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|138aa|down_1|NC_013315.1_1001350_1001764_+	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form	NA|284aa|down_2|NC_013315.1_1001793_1002645_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|293aa|down_3|NC_013315.1_1002634_1003513_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|67aa|down_4|NC_013315.1_1003692_1003893_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|497aa|down_5|NC_013315.1_1004359_1005850_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|499aa|down_6|NC_013315.1_1006107_1007604_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|117aa|down_7|NC_013315.1_1007737_1008088_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	cas14j|373aa|down_8|NC_013315.1_1008726_1009845_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|183aa|down_9|NC_013315.1_1009987_1010536_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	4	1294727-1295680	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,14	14	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|52aa|down_0|NC_013315.1_1296896_1297052_+,NA|84aa|down_1|NC_013315.1_1297297_1297549_+,NA|128aa|down_2|NC_013315.1_1298757_1299141_-,NA|115aa|down_3|NC_013315.1_1299267_1299612_+,NA|72aa|down_4|NC_013315.1_1299794_1300010_+,NA|106aa|down_5|NC_013315.1_1300995_1301313_-,NA|190aa|down_6|NC_013315.1_1301604_1302174_-,NA|65aa|down_8|NC_013315.1_1303938_1304133_-	NA|360aa|up_9|NC_013315.1_1282564_1283644_+	pfam02618, YceG, YceG-like family	NA|225aa|up_8|NC_013315.1_1283815_1284490_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_7|NC_013315.1_1284476_1285724_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_6|NC_013315.1_1285795_1287460_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_5|NC_013315.1_1287556_1287841_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_4|NC_013315.1_1287863_1289381_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_3|NC_013315.1_1289505_1290327_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_2|NC_013315.1_1290517_1291945_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|224aa|up_1|NC_013315.1_1292254_1292926_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|300aa|up_0|NC_013315.1_1292919_1293819_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|52aa|down_0|NC_013315.1_1296896_1297052_+	NA	NA|84aa|down_1|NC_013315.1_1297297_1297549_+	NA	NA|128aa|down_2|NC_013315.1_1298757_1299141_-	NA	NA|115aa|down_3|NC_013315.1_1299267_1299612_+	NA	NA|72aa|down_4|NC_013315.1_1299794_1300010_+	NA	NA|106aa|down_5|NC_013315.1_1300995_1301313_-	NA	NA|190aa|down_6|NC_013315.1_1301604_1302174_-	NA	NA|170aa|down_7|NC_013315.1_1303327_1303837_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_8|NC_013315.1_1303938_1304133_-	NA	NA|131aa|down_9|NC_013315.1_1304647_1305040_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	5	1504069-1504821	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	10,11,10	11	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|80aa|down_4|NC_013315.1_1511953_1512193_+,NA|59aa|down_5|NC_013315.1_1512380_1512557_-	NA|260aa|up_9|NC_013315.1_1493031_1493811_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|NC_013315.1_1493914_1494499_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_7|NC_013315.1_1494698_1496129_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|NC_013315.1_1496444_1497389_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_5|NC_013315.1_1497659_1498595_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|198aa|up_4|NC_013315.1_1498714_1499308_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_3|NC_013315.1_1499414_1499843_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_2|NC_013315.1_1499909_1500578_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|NC_013315.1_1500695_1502051_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|119aa|up_0|NC_013315.1_1503181_1503538_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|578aa|down_0|NC_013315.1_1505146_1506880_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NC_013315.1_1507119_1507965_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NC_013315.1_1507995_1510230_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NC_013315.1_1510999_1511809_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NC_013315.1_1511953_1512193_+	NA	NA|59aa|down_5|NC_013315.1_1512380_1512557_-	NA	NA|225aa|down_6|NC_013315.1_1513061_1513736_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|NC_013315.1_1513955_1514510_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|NC_013315.1_1514587_1514953_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|262aa|down_9|NC_013315.1_1515417_1516203_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	6	1615439-1615732	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|50aa|up_9|NC_013315.1_1604263_1604413_+,NA|190aa|up_7|NC_013315.1_1605327_1605897_+,NA|61aa|up_4|NC_013315.1_1608846_1609029_-,NA|95aa|down_0|NC_013315.1_1615899_1616184_-,NA|330aa|down_5|NC_013315.1_1620633_1621623_+	NA|50aa|up_9|NC_013315.1_1604263_1604413_+	NA	NA|300aa|up_8|NC_013315.1_1604423_1605323_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NC_013315.1_1605327_1605897_+	NA	NA|216aa|up_6|NC_013315.1_1606063_1606711_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NC_013315.1_1607100_1608015_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NC_013315.1_1608846_1609029_-	NA	NA|283aa|up_3|NC_013315.1_1609439_1610288_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NC_013315.1_1610306_1611134_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NC_013315.1_1611108_1612032_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NC_013315.1_1612684_1614778_+	cd01948, EAL, EAL domain	NA|95aa|down_0|NC_013315.1_1615899_1616184_-	NA	NA|273aa|down_1|NC_013315.1_1616390_1617209_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NC_013315.1_1617341_1619462_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NC_013315.1_1619487_1619715_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NC_013315.1_1620041_1620482_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|330aa|down_5|NC_013315.1_1620633_1621623_+	NA	NA|403aa|down_6|NC_013315.1_1622098_1623307_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NC_013315.1_1623367_1624249_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|down_8|NC_013315.1_1624634_1625579_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NC_013315.1_1625801_1626347_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	7	1709876-1710232	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,5,5	5	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|116aa|up_9|NC_013315.1_1702927_1703275_+,NA|269aa|up_7|NC_013315.1_1703674_1704481_+,NA|146aa|up_6|NC_013315.1_1704829_1705267_+,NA|59aa|up_5|NC_013315.1_1705259_1705436_+,NA|276aa|up_2|NC_013315.1_1707292_1708120_+,NA|54aa|up_0|NC_013315.1_1708972_1709134_+,NA|63aa|down_0|NC_013315.1_1710470_1710659_+	NA|116aa|up_9|NC_013315.1_1702927_1703275_+	NA	NA|97aa|up_8|NC_013315.1_1703274_1703565_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|269aa|up_7|NC_013315.1_1703674_1704481_+	NA	NA|146aa|up_6|NC_013315.1_1704829_1705267_+	NA	NA|59aa|up_5|NC_013315.1_1705259_1705436_+	NA	NA|437aa|up_4|NC_013315.1_1705436_1706747_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_3|NC_013315.1_1706763_1707234_+	pfam09393, DUF2001, Phage tail tube protein	NA|276aa|up_2|NC_013315.1_1707292_1708120_+	NA	NA|147aa|up_1|NC_013315.1_1708191_1708632_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_0|NC_013315.1_1708972_1709134_+	NA	NA|63aa|down_0|NC_013315.1_1710470_1710659_+	NA	NA|289aa|down_1|NC_013315.1_1710777_1711644_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|176aa|down_2|NC_013315.1_1712508_1713036_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_3|NC_013315.1_1713173_1713941_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_4|NC_013315.1_1714006_1716379_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_5|NC_013315.1_1716395_1717085_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_6|NC_013315.1_1717077_1718970_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_7|NC_013315.1_1718983_1719244_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_8|NC_013315.1_1719248_1719668_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_9|NC_013315.1_1719668_1720718_+	pfam04865, Baseplate_J, Baseplate J-like protein
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	8	1712097-1712387	5,8	PILER-CR,CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAA,GTTTTATATTAACTATATGGAATGTAAATC	28,30	0	0	NA	NA	I-A:I-A	3,4	4	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|269aa|up_9|NC_013315.1_1703674_1704481_+,NA|146aa|up_8|NC_013315.1_1704829_1705267_+,NA|59aa|up_7|NC_013315.1_1705259_1705436_+,NA|276aa|up_4|NC_013315.1_1707292_1708120_+,NA|54aa|up_2|NC_013315.1_1708972_1709134_+,NA|63aa|up_1|NC_013315.1_1710470_1710659_+,NA	NA|269aa|up_9|NC_013315.1_1703674_1704481_+	NA	NA|146aa|up_8|NC_013315.1_1704829_1705267_+	NA	NA|59aa|up_7|NC_013315.1_1705259_1705436_+	NA	NA|437aa|up_6|NC_013315.1_1705436_1706747_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_5|NC_013315.1_1706763_1707234_+	pfam09393, DUF2001, Phage tail tube protein	NA|276aa|up_4|NC_013315.1_1707292_1708120_+	NA	NA|147aa|up_3|NC_013315.1_1708191_1708632_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_2|NC_013315.1_1708972_1709134_+	NA	NA|63aa|up_1|NC_013315.1_1710470_1710659_+	NA	NA|289aa|up_0|NC_013315.1_1710777_1711644_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|176aa|down_0|NC_013315.1_1712508_1713036_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_1|NC_013315.1_1713173_1713941_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_2|NC_013315.1_1714006_1716379_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|NC_013315.1_1716395_1717085_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_4|NC_013315.1_1717077_1718970_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|NC_013315.1_1718983_1719244_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NC_013315.1_1719248_1719668_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NC_013315.1_1719668_1720718_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NC_013315.1_1720710_1721328_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|342aa|down_9|NC_013315.1_1721339_1722365_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	9	1849663-1850878	6,9,5	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	16,18,18	18	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|NC_013315.1_1851286_1851574_+,NA|59aa|down_5|NC_013315.1_1857961_1858138_-,NA|341aa|down_6|NC_013315.1_1858712_1859735_+,NA|258aa|down_8|NC_013315.1_1860641_1861415_+	NA|200aa|up_9|NC_013315.1_1832488_1833088_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_8|NC_013315.1_1833190_1833988_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_7|NC_013315.1_1834297_1835284_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_6|NC_013315.1_1835767_1837498_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|825aa|up_5|NC_013315.1_1838898_1841373_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_4|NC_013315.1_1841372_1842830_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_3|NC_013315.1_1843252_1845610_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_2|NC_013315.1_1845695_1846013_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|252aa|up_1|NC_013315.1_1846350_1847106_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_0|NC_013315.1_1847744_1849016_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|NC_013315.1_1851286_1851574_+	NA	NA|184aa|down_1|NC_013315.1_1852111_1852663_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NC_013315.1_1852853_1853816_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NC_013315.1_1854110_1855955_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_4|NC_013315.1_1856276_1856861_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|NC_013315.1_1857961_1858138_-	NA	NA|341aa|down_6|NC_013315.1_1858712_1859735_+	NA	NA|296aa|down_7|NC_013315.1_1859748_1860636_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|NC_013315.1_1860641_1861415_+	NA	NA|242aa|down_9|NC_013315.1_1861526_1862252_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	10	2200187-2200869	6,10,7	CRT,CRISPRCasFinder,PILER-CR	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTACATTCCATATAGTTAATNATAAAAC,CTTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAAG	29,29,29	0	0	NA	NA	NA:I-A:I-A	10,9,8	10	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|95aa|up_0|NC_013315.1_2199790_2200075_-,NA|206aa|down_7|NC_013315.1_2209488_2210106_-,NA|188aa|down_8|NC_013315.1_2212372_2212936_-,NA|238aa|down_9|NC_013315.1_2213094_2213808_-	NA|287aa|up_9|NC_013315.1_2190025_2190886_-	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis	NA|406aa|up_8|NC_013315.1_2190900_2192118_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|345aa|up_7|NC_013315.1_2192159_2193194_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|255aa|up_6|NC_013315.1_2193883_2194648_-	pfam14268, YoaP, YoaP-like	NA|158aa|up_5|NC_013315.1_2194950_2195424_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_4|NC_013315.1_2195792_2196350_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_3|NC_013315.1_2196607_2197306_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|156aa|up_2|NC_013315.1_2198327_2198795_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_1|NC_013315.1_2198805_2199021_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|95aa|up_0|NC_013315.1_2199790_2200075_-	NA	NA|291aa|down_0|NC_013315.1_2201699_2202572_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|NC_013315.1_2202965_2203544_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|NC_013315.1_2203601_2204318_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|NC_013315.1_2204508_2205594_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|220aa|down_4|NC_013315.1_2205748_2206408_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|NC_013315.1_2206624_2207917_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|NC_013315.1_2207934_2209128_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|206aa|down_7|NC_013315.1_2209488_2210106_-	NA	NA|188aa|down_8|NC_013315.1_2212372_2212936_-	NA	NA|238aa|down_9|NC_013315.1_2213094_2213808_-	NA
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	11	2660818-2660975	8	PILER-CR	no	cas3,cas5,cas7,cas6	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGGATTTCA	28	0	0	NA	NA	NA	2	2	Unclear	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|NC_013315.1_2665406_2666882_-	NA|448aa|up_9|NC_013315.1_2653274_2654618_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|NC_013315.1_2654630_2654867_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NC_013315.1_2655079_2655643_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NC_013315.1_2655835_2656333_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NC_013315.1_2656443_2656887_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NC_013315.1_2656916_2657096_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NC_013315.1_2657258_2657609_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NC_013315.1_2657651_2658950_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NC_013315.1_2658951_2659710_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NC_013315.1_2659728_2660676_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NC_013315.1_2661116_2663525_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|269aa|down_1|NC_013315.1_2663551_2664358_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|NC_013315.1_2664373_2665387_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NC_013315.1_2665406_2666882_-	NA	cas6|246aa|down_4|NC_013315.1_2666886_2667624_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|NC_013315.1_2667882_2668992_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|NC_013315.1_2669021_2669789_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|458aa|down_7|NC_013315.1_2669976_2671350_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|NC_013315.1_2671385_2672321_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|385aa|down_9|NC_013315.1_2673286_2674441_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	12	2972867-2973192	11	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|107aa|down_2|NC_013315.1_2976056_2976377_-,NA|664aa|down_3|NC_013315.1_2976366_2978358_-,NA|458aa|down_7|NC_013315.1_2989015_2990389_-	NA|218aa|up_9|NC_013315.1_2957884_2958538_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NC_013315.1_2959041_2960385_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NC_013315.1_2960531_2961896_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|622aa|up_6|NC_013315.1_2962073_2963939_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NC_013315.1_2964174_2965392_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NC_013315.1_2965591_2966455_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NC_013315.1_2966536_2968459_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NC_013315.1_2968537_2969386_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NC_013315.1_2969798_2970680_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|288aa|up_0|NC_013315.1_2970887_2971751_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NC_013315.1_2973951_2974965_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|290aa|down_1|NC_013315.1_2974989_2975859_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NC_013315.1_2976056_2976377_-	NA	NA|664aa|down_3|NC_013315.1_2976366_2978358_-	NA	NA|848aa|down_4|NC_013315.1_2978479_2981023_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NC_013315.1_2981766_2982444_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NC_013315.1_2987704_2988643_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NC_013315.1_2989015_2990389_-	NA	NA|441aa|down_8|NC_013315.1_2990575_2991898_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NC_013315.1_2991890_2992595_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	13	3137064-3137275	12	CRISPRCasFinder	no	cas14j	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	TCTTCTGATGGTGGTACTGGTGGATT	26	0	0	NA	NA	NA	3	3	TypeV	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|459aa|up_7|NC_013315.1_3126231_3127608_+,NA	NA|216aa|up_9|NC_013315.1_3124130_3124778_-	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|up_8|NC_013315.1_3124791_3125964_-	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|459aa|up_7|NC_013315.1_3126231_3127608_+	NA	NA|278aa|up_6|NC_013315.1_3127858_3128692_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	cas14j|373aa|up_5|NC_013315.1_3129551_3130670_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|365aa|up_4|NC_013315.1_3131522_3132617_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|149aa|up_3|NC_013315.1_3132618_3133065_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|397aa|up_2|NC_013315.1_3133370_3134561_+	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|321aa|up_1|NC_013315.1_3134730_3135693_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|221aa|up_0|NC_013315.1_3135810_3136473_-	cd20183, M34_PPEP, Pro-Pro endopeptidase (PPEP) and similar proteins; belongs to peptidase family M34	NA|393aa|down_0|NC_013315.1_3140121_3141300_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|62aa|down_1|NC_013315.1_3141671_3141857_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|925aa|down_2|NC_013315.1_3141921_3144696_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|419aa|down_3|NC_013315.1_3144867_3146124_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|501aa|down_4|NC_013315.1_3146195_3147698_-	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|397aa|down_5|NC_013315.1_3147788_3148979_-	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|363aa|down_6|NC_013315.1_3149217_3150306_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|233aa|down_7|NC_013315.1_3150590_3151289_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|502aa|down_8|NC_013315.1_3151402_3152908_-	cd16956, HATPase_YehU-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YehU	NA|424aa|down_9|NC_013315.1_3153275_3154547_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	14	3244496-3246042	13,7,9	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	23,21,20	23	Unclear	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NC_013315.1_3237387_3237588_+,NA|260aa|up_1|NC_013315.1_3242771_3243551_+,NA	NA|740aa|up_9|NC_013315.1_3231734_3233954_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NC_013315.1_3234229_3236884_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NC_013315.1_3237387_3237588_+	NA	NA|197aa|up_6|NC_013315.1_3237795_3238386_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NC_013315.1_3238388_3239264_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NC_013315.1_3239339_3240731_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NC_013315.1_3240734_3241871_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NC_013315.1_3241902_3242448_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NC_013315.1_3242771_3243551_+	NA	NA|143aa|up_0|NC_013315.1_3244006_3244435_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NC_013315.1_3246225_3246492_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NC_013315.1_3246494_3247475_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|184aa|down_2|NC_013315.1_3247477_3248029_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NC_013315.1_3248043_3250365_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NC_013315.1_3250375_3251077_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NC_013315.1_3251078_3251993_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NC_013315.1_3251994_3253872_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NC_013315.1_3253877_3254615_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NC_013315.1_3254692_3255610_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NC_013315.1_3255888_3257805_-	pfam02687, FtsX, FtsX-like permease family
GCF_000085225.1_ASM8522v1	NC_013315	Clostridioides difficile CD196, complete genome	15	3491430-3492052	14,8,10	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas7,cas6,cas5	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTATAACTAACTTAGTGTAATTTAAAC,ATTTATAACTAACTTAGTGTAATTTAAAC,ATTTATAACTAACTTAGTGTAATTTAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	9,9,8	9	Unclear	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|70aa|up_8|NC_013315.1_3475984_3476194_-,NA|243aa|up_6|NC_013315.1_3480637_3481366_-,NA|540aa|up_5|NC_013315.1_3481383_3483003_-,NA|389aa|down_2|NC_013315.1_3495391_3496558_-,NA|91aa|down_6|NC_013315.1_3499841_3500114_-,NA|248aa|down_8|NC_013315.1_3501710_3502454_-,NA|105aa|down_9|NC_013315.1_3502475_3502790_-	NA|47aa|up_9|NC_013315.1_3475448_3475589_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|70aa|up_8|NC_013315.1_3475984_3476194_-	NA	NA|1452aa|up_7|NC_013315.1_3476295_3480651_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|243aa|up_6|NC_013315.1_3480637_3481366_-	NA	NA|540aa|up_5|NC_013315.1_3481383_3483003_-	NA	NA|337aa|up_4|NC_013315.1_3483002_3484013_-	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220)	NA|130aa|up_3|NC_013315.1_3484913_3485303_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|53aa|up_2|NC_013315.1_3485359_3485518_+	pfam13333, rve_2, Integrase core domain	NA|431aa|up_1|NC_013315.1_3485744_3487037_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|405aa|up_0|NC_013315.1_3487036_3488251_-	pfam08867, FRG, FRG domain	cas3|662aa|down_0|NC_013315.1_3492304_3494290_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas7|357aa|down_1|NC_013315.1_3494300_3495371_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	NA|389aa|down_2|NC_013315.1_3495391_3496558_-	NA	cas6|255aa|down_3|NC_013315.1_3496559_3497324_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas5|216aa|down_4|NC_013315.1_3497314_3497962_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	NA|376aa|down_5|NC_013315.1_3498441_3499569_-	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms]	NA|91aa|down_6|NC_013315.1_3499841_3500114_-	NA	NA|445aa|down_7|NC_013315.1_3500363_3501698_-	TIGR00665, DnaB, replicative DNA helicase	NA|248aa|down_8|NC_013315.1_3501710_3502454_-	NA	NA|105aa|down_9|NC_013315.1_3502475_3502790_-	NA
