assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	1	166960-167065	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GTGGGTGCCGACCGTTGGTCGGCAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA|105aa|down_2|NC_010943.1_169242_169557_+,NA|296aa|down_9|NC_010943.1_176970_177858_-	NA|264aa|up_9|NC_010943.1_156169_156961_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|330aa|up_8|NC_010943.1_157013_158003_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|690aa|up_7|NC_010943.1_158059_160129_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|204aa|up_6|NC_010943.1_160139_160751_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|162aa|up_5|NC_010943.1_160835_161321_-	pfam03724, META, META domain	NA|276aa|up_4|NC_010943.1_161463_162291_-	pfam14302, DUF4377, Domain of unknown function (DUF4377)	NA|265aa|up_3|NC_010943.1_162364_163159_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|470aa|up_2|NC_010943.1_163382_164792_+	PRK09469, glnA, glutamate--ammonia ligase	NA|113aa|up_1|NC_010943.1_165139_165478_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|477aa|up_0|NC_010943.1_165499_166930_+	PRK10666, PRK10666, ammonium transporter AmtB	NA|249aa|down_0|NC_010943.1_167153_167900_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|389aa|down_1|NC_010943.1_167967_169134_+	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane]	NA|105aa|down_2|NC_010943.1_169242_169557_+	NA	NA|682aa|down_3|NC_010943.1_169664_171710_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|354aa|down_4|NC_010943.1_171880_172942_+	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|483aa|down_5|NC_010943.1_172934_174383_+	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|190aa|down_6|NC_010943.1_174476_175046_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|209aa|down_7|NC_010943.1_175077_175704_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|356aa|down_8|NC_010943.1_175804_176872_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|296aa|down_9|NC_010943.1_176970_177858_-	NA
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	2	332111-332189	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CAGGAGCGCAAGACAGATTCAGCGCG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|163aa|up_0|NC_010943.1_331522_332011_-,NA|115aa|down_0|NC_010943.1_332896_333241_+,NA|96aa|down_2|NC_010943.1_334914_335202_-,NA|375aa|down_3|NC_010943.1_335567_336692_-,NA|200aa|down_4|NC_010943.1_336719_337319_-,NA|108aa|down_7|NC_010943.1_338258_338582_-,NA|136aa|down_8|NC_010943.1_338661_339069_-	NA|72aa|up_9|NC_010943.1_324240_324456_-	pfam05489, Phage_tail_X, Phage Tail Protein X	NA|156aa|up_8|NC_010943.1_324455_324923_-	pfam05926, Phage_GPL, Phage head completion protein (GPL)	NA|236aa|up_7|NC_010943.1_325027_325735_-	PHA02537, M, terminase endonuclease subunit; Provisional	NA|339aa|up_6|NC_010943.1_325738_326755_-	pfam05125, Phage_cap_P2, Phage major capsid protein, P2 family	NA|305aa|up_5|NC_010943.1_326788_327703_-	pfam05929, Phage_GPO, Phage capsid scaffolding protein (GPO) serine peptidase	NA|586aa|up_4|NC_010943.1_327806_329564_+	PHA02535, P, terminase ATPase subunit; Provisional	NA|337aa|up_3|NC_010943.1_329563_330574_+	PHA02536, Q, portal vertex protein; Provisional	NA|84aa|up_2|NC_010943.1_330576_330828_+	pfam10122, Mu-like_Com, Mu-like prophage protein Com	NA|237aa|up_1|NC_010943.1_330745_331456_+	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	NA|163aa|up_0|NC_010943.1_331522_332011_-	NA	NA|115aa|down_0|NC_010943.1_332896_333241_+	NA	NA|254aa|down_1|NC_010943.1_333315_334077_-	cd18722, PIN_NicB-like, LabA-like PIN domain of Pseudomonas putida S16 NicB and related proteins	NA|96aa|down_2|NC_010943.1_334914_335202_-	NA	NA|375aa|down_3|NC_010943.1_335567_336692_-	NA	NA|200aa|down_4|NC_010943.1_336719_337319_-	NA	NA|96aa|down_5|NC_010943.1_337552_337840_+	TIGR02683, Uncharacterized_protein_HI_1419, putative addiction module killer protein	NA|101aa|down_6|NC_010943.1_337898_338201_+	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein	NA|108aa|down_7|NC_010943.1_338258_338582_-	NA	NA|136aa|down_8|NC_010943.1_338661_339069_-	NA	NA|257aa|down_9|NC_010943.1_339662_340433_+	pfam11218, DUF3011, Protein of unknown function (DUF3011)
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	3	586645-586746	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GGTAGGTGCCGACCGTTGGTCGGCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|61aa|up_9|NC_010943.1_577187_577370_+,NA|88aa|up_3|NC_010943.1_583780_584044_-,NA	NA|61aa|up_9|NC_010943.1_577187_577370_+	NA	NA|160aa|up_8|NC_010943.1_577479_577959_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_7|NC_010943.1_578108_579413_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_6|NC_010943.1_579391_580459_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|188aa|up_5|NC_010943.1_580641_581205_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|97aa|up_4|NC_010943.1_583407_583698_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|up_3|NC_010943.1_583780_584044_-	NA	NA|355aa|up_2|NC_010943.1_584199_585264_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|234aa|up_1|NC_010943.1_585260_585962_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|up_0|NC_010943.1_585958_586642_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_0|NC_010943.1_586757_587966_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_1|NC_010943.1_587965_588481_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|365aa|down_2|NC_010943.1_588671_589766_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|down_3|NC_010943.1_590045_590957_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|213aa|down_4|NC_010943.1_591095_591734_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|310aa|down_5|NC_010943.1_591842_592772_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|264aa|down_6|NC_010943.1_592768_593560_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|219aa|down_7|NC_010943.1_593625_594282_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|614aa|down_8|NC_010943.1_594381_596223_-	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|193aa|down_9|NC_010943.1_596704_597283_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	4	749780-749864	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TGGTAGTGCCGGCCGCTGGCCGGCATCGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|122aa|up_9|NC_010943.1_734253_734619_-,NA|158aa|down_4|NC_010943.1_755245_755719_+,NA|140aa|down_5|NC_010943.1_755725_756145_+,NA|150aa|down_6|NC_010943.1_756172_756622_+,NA|143aa|down_9|NC_010943.1_758592_759021_-	NA|122aa|up_9|NC_010943.1_734253_734619_-	NA	NA|180aa|up_8|NC_010943.1_735078_735618_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|243aa|up_7|NC_010943.1_735703_736432_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|855aa|up_6|NC_010943.1_736524_739089_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|345aa|up_5|NC_010943.1_739079_740114_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|395aa|up_4|NC_010943.1_740381_741566_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|734aa|up_3|NC_010943.1_741562_743764_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|716aa|up_2|NC_010943.1_743770_745918_+	PRK15489, nfrB, glycosyl transferase family protein	NA|940aa|up_1|NC_010943.1_745914_748734_+	pfam13283, NfrA_C, Bacteriophage N adsorption protein A C-term	NA|335aa|up_0|NC_010943.1_748727_749732_-	pfam14488, DUF4434, Domain of unknown function (DUF4434)	NA|439aa|down_0|NC_010943.1_749871_751188_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|555aa|down_1|NC_010943.1_751289_752954_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|158aa|down_2|NC_010943.1_753206_753680_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|418aa|down_3|NC_010943.1_753867_755121_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|158aa|down_4|NC_010943.1_755245_755719_+	NA	NA|140aa|down_5|NC_010943.1_755725_756145_+	NA	NA|150aa|down_6|NC_010943.1_756172_756622_+	NA	NA|174aa|down_7|NC_010943.1_756771_757293_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|362aa|down_8|NC_010943.1_757471_758557_+	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA|143aa|down_9|NC_010943.1_758592_759021_-	NA
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	5	832011-832110	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TCATCCACGCATGGCGTGGATCT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|617aa|up_4|NC_010943.1_825254_827105_-,NA|144aa|up_1|NC_010943.1_829271_829703_-,NA|309aa|down_5|NC_010943.1_839153_840080_+	NA|404aa|up_9|NC_010943.1_818933_820145_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|572aa|up_8|NC_010943.1_820467_822183_+	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|267aa|up_7|NC_010943.1_822179_822980_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|353aa|up_6|NC_010943.1_823130_824189_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|337aa|up_5|NC_010943.1_824247_825258_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|617aa|up_4|NC_010943.1_825254_827105_-	NA	NA|276aa|up_3|NC_010943.1_827243_828071_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|332aa|up_2|NC_010943.1_828128_829124_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|up_1|NC_010943.1_829271_829703_-	NA	NA|306aa|up_0|NC_010943.1_829812_830730_-	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|433aa|down_0|NC_010943.1_833099_834398_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|324aa|down_1|NC_010943.1_834591_835563_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|65aa|down_2|NC_010943.1_835883_836078_+	pfam10636, hemP, Hemin uptake protein hemP	NA|736aa|down_3|NC_010943.1_836268_838476_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|200aa|down_4|NC_010943.1_838480_839080_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|309aa|down_5|NC_010943.1_839153_840080_+	NA	NA|839aa|down_6|NC_010943.1_840187_842704_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|216aa|down_7|NC_010943.1_842700_843348_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|215aa|down_8|NC_010943.1_843423_844068_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|238aa|down_9|NC_010943.1_844155_844869_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	6	2370633-2370740	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CATCCACGCATGGCGTGGATCTACC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|113aa|up_4|NC_010943.1_2361765_2362104_+,NA|72aa|down_1|NC_010943.1_2372514_2372730_-,NA|157aa|down_6|NC_010943.1_2376395_2376866_-	NA|136aa|up_9|NC_010943.1_2358575_2358983_-	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|132aa|up_8|NC_010943.1_2358986_2359382_-	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|315aa|up_7|NC_010943.1_2359519_2360464_-	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|219aa|up_6|NC_010943.1_2360731_2361388_+	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|102aa|up_5|NC_010943.1_2361463_2361769_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|113aa|up_4|NC_010943.1_2361765_2362104_+	NA	NA|406aa|up_3|NC_010943.1_2362195_2363413_+	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|591aa|up_2|NC_010943.1_2363822_2365595_-	cd01948, EAL, EAL domain	NA|701aa|up_1|NC_010943.1_2365599_2367702_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|920aa|up_0|NC_010943.1_2367833_2370593_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|305aa|down_0|NC_010943.1_2371588_2372503_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|72aa|down_1|NC_010943.1_2372514_2372730_-	NA	NA|397aa|down_2|NC_010943.1_2372828_2374019_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|down_3|NC_010943.1_2374182_2374797_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|down_4|NC_010943.1_2374793_2375936_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|down_5|NC_010943.1_2375932_2376394_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|157aa|down_6|NC_010943.1_2376395_2376866_-	NA	NA|109aa|down_7|NC_010943.1_2376978_2377305_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_8|NC_010943.1_2377497_2378310_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|762aa|down_9|NC_010943.1_2378448_2380734_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	7	2755979-2756085	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CATCCACGCATGGCGTGGATCTACTGCC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|112aa|up_4|NC_010943.1_2753512_2753848_+,NA|154aa|up_3|NC_010943.1_2753978_2754440_-,NA	NA|582aa|up_9|NC_010943.1_2746954_2748700_-	pfam16930, Porin_5, Putative porin	NA|222aa|up_8|NC_010943.1_2748742_2749408_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|138aa|up_7|NC_010943.1_2749447_2749861_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|595aa|up_6|NC_010943.1_2749871_2751656_-	COG5306, COG5306, Uncharacterized conserved protein [Function unknown]	NA|539aa|up_5|NC_010943.1_2751694_2753311_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|112aa|up_4|NC_010943.1_2753512_2753848_+	NA	NA|154aa|up_3|NC_010943.1_2753978_2754440_-	NA	NA|149aa|up_2|NC_010943.1_2754543_2754990_+	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|117aa|up_1|NC_010943.1_2754998_2755349_+	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|205aa|up_0|NC_010943.1_2755345_2755960_+	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]	NA|305aa|down_0|NC_010943.1_2756302_2757217_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|4128aa|down_1|NC_010943.1_2757749_2770133_-	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein	NA|392aa|down_2|NC_010943.1_2770332_2771508_-	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|400aa|down_3|NC_010943.1_2771932_2773132_-	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|478aa|down_4|NC_010943.1_2773139_2774573_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|793aa|down_5|NC_010943.1_2774569_2776948_-	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|176aa|down_6|NC_010943.1_2776944_2777472_-	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|388aa|down_7|NC_010943.1_2777468_2778632_-	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L	NA|302aa|down_8|NC_010943.1_2778628_2779534_-	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|146aa|down_9|NC_010943.1_2779543_2779981_-	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	8	2804788-2804866	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TTTGGTAGTGCCGGCCGCTGGCCGGCA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA|122aa|down_7|NC_010943.1_2815502_2815868_-	NA|572aa|up_9|NC_010943.1_2792500_2794216_-	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase	NA|746aa|up_8|NC_010943.1_2794212_2796450_-	PRK12568, PRK12568, glycogen branching enzyme; Provisional	NA|509aa|up_7|NC_010943.1_2796446_2797973_-	PRK00654, glgA, glycogen synthase GlgA	NA|143aa|up_6|NC_010943.1_2798414_2798843_+	TIGR02938, Nitrogen_fixation_regulatory_protein, nitrogen fixation negative regulator NifL	NA|510aa|up_5|NC_010943.1_2798839_2800369_+	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	NA|223aa|up_4|NC_010943.1_2800568_2801237_-	cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system	NA|228aa|up_3|NC_010943.1_2801226_2801910_-	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]	NA|248aa|up_2|NC_010943.1_2801913_2802657_-	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold	NA|259aa|up_1|NC_010943.1_2802676_2803453_-	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr	NA|405aa|up_0|NC_010943.1_2803464_2804679_-	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|444aa|down_0|NC_010943.1_2804873_2806205_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|300aa|down_1|NC_010943.1_2806228_2807128_-	TIGR02933, Putative_peptidyl-prolyl_cis-trans_isomerase_NifM, nitrogen fixation protein NifM	NA|236aa|down_2|NC_010943.1_2807131_2807839_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|227aa|down_3|NC_010943.1_2807835_2808516_-	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|515aa|down_4|NC_010943.1_2808515_2810060_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1269aa|down_5|NC_010943.1_2810059_2813866_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|473aa|down_6|NC_010943.1_2813938_2815357_-	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|122aa|down_7|NC_010943.1_2815502_2815868_-	NA	NA|181aa|down_8|NC_010943.1_2815864_2816407_-	cd02503, MobA, MobA catalyzes the formation of molybdopterin guanine dinucleotide	NA|167aa|down_9|NC_010943.1_2816515_2817016_-	cd00756, MoaE, MoaE family
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	9	3201880-3201979	9	CRISPRCasFinder	no	DEDDh,csa3	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Type I-A	GGTAGATGCCCACCTTGGTGGGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|100aa|up_9|NC_010943.1_3193737_3194037_+,NA|105aa|up_8|NC_010943.1_3194044_3194359_+,NA|98aa|down_6|NC_010943.1_3214494_3214788_-	NA|100aa|up_9|NC_010943.1_3193737_3194037_+	NA	NA|105aa|up_8|NC_010943.1_3194044_3194359_+	NA	NA|213aa|up_7|NC_010943.1_3194366_3195005_+	pfam04299, FMN_bind_2, Putative FMN-binding domain	NA|221aa|up_6|NC_010943.1_3195079_3195742_+	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|174aa|up_5|NC_010943.1_3195762_3196284_+	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	NA|425aa|up_4|NC_010943.1_3196446_3197721_+	TIGR01814, kynureninase, kynureninase	NA|456aa|up_3|NC_010943.1_3197752_3199120_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	DEDDh|480aa|up_2|NC_010943.1_3199119_3200559_+	PRK11779, sbcB, exonuclease I; Provisional	NA|229aa|up_1|NC_010943.1_3200555_3201242_+	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein	NA|184aa|up_0|NC_010943.1_3201297_3201849_+	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|315aa|down_0|NC_010943.1_3202029_3202974_-	pfam06189, 5-nucleotidase, 5'-nucleotidase	NA|258aa|down_1|NC_010943.1_3203021_3203795_-	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|1659aa|down_2|NC_010943.1_3203985_3208962_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|219aa|down_3|NC_010943.1_3209212_3209869_+	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|428aa|down_4|NC_010943.1_3209868_3211152_+	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1058aa|down_5|NC_010943.1_3211167_3214341_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|98aa|down_6|NC_010943.1_3214494_3214788_-	NA	NA|306aa|down_7|NC_010943.1_3215065_3215983_+	PRK15188, PRK15188, fimbrial chaperone protein BcfB; Provisional	NA|383aa|down_8|NC_010943.1_3216028_3217177_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	csa3|310aa|down_9|NC_010943.1_3217330_3218260_+	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	10	3647016-3647120	10	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	CGGTCGTGCCGGCCGCTGGCCGGCAAT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|183aa|up_6|NC_010943.1_3639828_3640377_+,NA|97aa|up_5|NC_010943.1_3640391_3640682_+,NA|221aa|up_1|NC_010943.1_3644710_3645373_-,NA	NA|697aa|up_9|NC_010943.1_3636333_3638424_+	PRK11249, katE, hydroperoxidase II; Provisional	NA|164aa|up_8|NC_010943.1_3638446_3638938_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|247aa|up_7|NC_010943.1_3638947_3639688_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|183aa|up_6|NC_010943.1_3639828_3640377_+	NA	NA|97aa|up_5|NC_010943.1_3640391_3640682_+	NA	NA|709aa|up_4|NC_010943.1_3640771_3642898_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|321aa|up_3|NC_010943.1_3643130_3644093_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|226aa|up_2|NC_010943.1_3644097_3644775_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|221aa|up_1|NC_010943.1_3644710_3645373_-	NA	NA|431aa|up_0|NC_010943.1_3645490_3646783_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|62aa|down_0|NC_010943.1_3647154_3647340_-	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown]	NA|288aa|down_1|NC_010943.1_3647407_3648271_-	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|378aa|down_2|NC_010943.1_3648267_3649401_-	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|332aa|down_3|NC_010943.1_3649554_3650550_+	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases	NA|124aa|down_4|NC_010943.1_3650638_3651010_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|298aa|down_5|NC_010943.1_3651098_3651992_-	PRK10266, PRK10266, curved DNA-binding protein	NA|161aa|down_6|NC_010943.1_3652251_3652734_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|192aa|down_7|NC_010943.1_3652763_3653339_+	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]	NA|794aa|down_8|NC_010943.1_3653411_3655793_-	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|1636aa|down_9|NC_010943.1_3655857_3660765_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	11	3819103-3819216	11	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TTGGGTAGGTGCGGACCGTTGGTCCGCAC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA	NA|430aa|up_9|NC_010943.1_3804156_3805446_+	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|267aa|up_8|NC_010943.1_3805586_3806387_+	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane]	NA|862aa|up_7|NC_010943.1_3806459_3809045_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|274aa|up_6|NC_010943.1_3809226_3810048_-	pfam11219, DUF3014, Protein of unknown function (DUF3014)	NA|237aa|up_5|NC_010943.1_3810218_3810929_+	pfam14497, GST_C_3, Glutathione S-transferase, C-terminal domain	NA|535aa|up_4|NC_010943.1_3811008_3812613_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|573aa|up_3|NC_010943.1_3813222_3814941_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|286aa|up_2|NC_010943.1_3815070_3815928_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|161aa|up_1|NC_010943.1_3815964_3816447_-	pfam12098, DUF3574, Protein of unknown function (DUF3574)	NA|812aa|up_0|NC_010943.1_3816661_3819097_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|253aa|down_0|NC_010943.1_3819311_3820070_+	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|594aa|down_1|NC_010943.1_3820111_3821893_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|455aa|down_2|NC_010943.1_3821889_3823254_+	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]	NA|146aa|down_3|NC_010943.1_3823324_3823762_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|181aa|down_4|NC_010943.1_3823736_3824279_-	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|257aa|down_5|NC_010943.1_3824263_3825034_-	PRK10723, PRK10723, polyphenol oxidase	NA|330aa|down_6|NC_010943.1_3825033_3826023_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|296aa|down_7|NC_010943.1_3826136_3827024_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|401aa|down_8|NC_010943.1_3827214_3828417_+	pfam03583, LIP, Secretory lipase	NA|545aa|down_9|NC_010943.1_3828904_3830539_-	PRK13981, PRK13981, NAD synthetase; Provisional
GCF_000072485.1_ASM7248v1	NC_010943	Stenotrophomonas maltophilia K279a, complete genome	12	3924991-3925103	12	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GCGTGCCAACCAAGGTTGGCACCTACCGAAGGCGGGTGCGG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|215aa|up_7|NC_010943.1_3912426_3913071_+,NA|248aa|up_6|NC_010943.1_3913247_3913991_-,NA	NA|361aa|up_9|NC_010943.1_3908394_3909477_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|808aa|up_8|NC_010943.1_3909672_3912096_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|up_7|NC_010943.1_3912426_3913071_+	NA	NA|248aa|up_6|NC_010943.1_3913247_3913991_-	NA	NA|1330aa|up_5|NC_010943.1_3914060_3918050_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|up_4|NC_010943.1_3918117_3918825_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|382aa|up_3|NC_010943.1_3918841_3919987_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|909aa|up_2|NC_010943.1_3919983_3922710_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|170aa|up_1|NC_010943.1_3922760_3923270_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|363aa|up_0|NC_010943.1_3923788_3924877_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|426aa|down_0|NC_010943.1_3925242_3926520_-	PRK05614, gltA, citrate synthase	NA|81aa|down_1|NC_010943.1_3926816_3927059_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|313aa|down_2|NC_010943.1_3927147_3928086_-	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans	NA|704aa|down_3|NC_010943.1_3928470_3930582_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|129aa|down_4|NC_010943.1_3930589_3930976_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|721aa|down_5|NC_010943.1_3931159_3933322_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|100aa|down_6|NC_010943.1_3933427_3933727_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|222aa|down_7|NC_010943.1_3933837_3934503_-	PRK00300, gmk, guanylate kinase; Provisional	NA|1023aa|down_8|NC_010943.1_3934792_3937861_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|306aa|down_9|NC_010943.1_3937871_3938789_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing
