assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000069225.1_ASM6922v1	NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	1	1303030-1303412	1	CRT	no		csa3,WYL,DEDDh,cas3,PD-DExK	Orphan	GATGGNGAGCGCAAGCCCTGGTCNNNNGA	29	0	0	NA	NA	NA	6	6	Orphan	csa3,WYL,DEDDh,cas3,PD-DExK	NA|46aa|up_4|NC_010407.1_1293033_1293171_+,NA|200aa|up_2|NC_010407.1_1293811_1294411_-,NA|224aa|up_1|NC_010407.1_1294407_1295079_-,NA|76aa|down_2|NC_010407.1_1305703_1305931_+	NA|304aa|up_9|NC_010407.1_1287052_1287964_+	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis	NA|406aa|up_8|NC_010407.1_1287960_1289178_+	PRK03244, argD, acetylornithine transaminase	NA|308aa|up_7|NC_010407.1_1289325_1290249_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|418aa|up_6|NC_010407.1_1290297_1291551_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|494aa|up_5|NC_010407.1_1291555_1293037_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|46aa|up_4|NC_010407.1_1293033_1293171_+	NA	NA|205aa|up_3|NC_010407.1_1293178_1293793_+	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|200aa|up_2|NC_010407.1_1293811_1294411_-	NA	NA|224aa|up_1|NC_010407.1_1294407_1295079_-	NA	NA|435aa|up_0|NC_010407.1_1295321_1296626_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|360aa|down_0|NC_010407.1_1303584_1304664_+	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|347aa|down_1|NC_010407.1_1304653_1305694_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|76aa|down_2|NC_010407.1_1305703_1305931_+	NA	NA|273aa|down_3|NC_010407.1_1305977_1306796_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|320aa|down_4|NC_010407.1_1306759_1307719_+	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|572aa|down_5|NC_010407.1_1307711_1309427_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|565aa|down_6|NC_010407.1_1309548_1311243_+	PRK05380, pyrG, CTP synthetase; Validated	NA|234aa|down_7|NC_010407.1_1311239_1311941_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|329aa|down_8|NC_010407.1_1311937_1312924_+	PRK00283, xerD, tyrosine recombinase	NA|295aa|down_9|NC_010407.1_1312996_1313881_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
GCF_000069225.1_ASM6922v1	NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	2	2327869-2328020	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,PD-DExK	Orphan	GGCGACGGCAGGGGCGGGGCCGG	23	2	21	2327892-2327913|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997|2327979-2327997	NC_010407.1_2357677-2357656|NC_010407.1_1267143-1267161|NC_010407.1_1355407-1355425|NC_010407.1_1838345-1838363|NC_010407.1_1860644-1860662|NC_010407.1_2142850-2142868|NC_010407.1_2158090-2158108|NC_010407.1_2277400-2277418|NC_010407.1_2325679-2325697|NC_010407.1_2640214-2640232|NC_010407.1_3025984-3026002|NC_010407.1_154624-154606|NC_010407.1_1775206-1775188|NC_010407.1_1915655-1915637|NC_010407.1_2164161-2164143|NC_010407.1_2201011-2200993|NC_010407.1_2812825-2812807|NC_010408.1_389-407|NC_010408.1_1866-1884|NC_010408.1_92926-92908|NC_010408.1_94403-94385	NA	3	3	Orphan	csa3,WYL,DEDDh,cas3,PD-DExK	NA,NA|170aa|down_9|NC_010407.1_2344937_2345447_-	NA|87aa|up_9|NC_010407.1_2312938_2313199_-	PRK13858, PRK13858, T-DNA border endonuclease VirD1	NA|301aa|up_8|NC_010407.1_2313226_2314129_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|164aa|up_7|NC_010407.1_2314260_2314752_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|173aa|up_6|NC_010407.1_2314796_2315315_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|321aa|up_5|NC_010407.1_2315325_2316288_-	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|321aa|up_4|NC_010407.1_2316498_2317461_+	pfam00665, rve, Integrase core domain	NA|164aa|up_3|NC_010407.1_2317457_2317949_-	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism]	NA|472aa|up_2|NC_010407.1_2318020_2319436_+	PRK06058, PRK06058, 4-aminobutyrate--2-oxoglutarate transaminase	NA|337aa|up_1|NC_010407.1_2319435_2320446_+	pfam06089, Asparaginase_II, L-asparaginase II	NA|1145aa|up_0|NC_010407.1_2320435_2323870_-	TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC, C-terminal domain	NA|337aa|down_0|NC_010407.1_2328044_2329055_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|2008aa|down_1|NC_010407.1_2329115_2335139_-	pfam17892, Cadherin_5, Cadherin-like domain	NA|442aa|down_2|NC_010407.1_2336851_2338177_-	PRK05614, gltA, citrate synthase	NA|375aa|down_3|NC_010407.1_2338339_2339464_-	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|107aa|down_4|NC_010407.1_2339469_2339790_-	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|453aa|down_5|NC_010407.1_2339830_2341189_-	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	NA|300aa|down_6|NC_010407.1_2341368_2342268_+	pfam03239, FTR1, Iron permease FTR1 family	NA|406aa|down_7|NC_010407.1_2342338_2343556_+	cd14656, Imelysin-like_EfeO, EfeO is a component of the EfeUOB operon	NA|451aa|down_8|NC_010407.1_2343555_2344908_+	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme	NA|170aa|down_9|NC_010407.1_2344937_2345447_-	NA
GCF_000069225.1_ASM6922v1	NC_010408	Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1, complete sequence	1	86624-86699	1	CRISPRCasFinder	no			Orphan	GTCGGGCGCTCGCCGGGTGGTCGT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,PD-DExK	NA|189aa|up_9|NC_010408.1_81513_82080_+,NA|87aa|up_8|NC_010408.1_82182_82443_-,NA|72aa|up_7|NC_010408.1_82600_82816_+,NA|77aa|up_5|NC_010408.1_83449_83680_+,NA|169aa|up_4|NC_010408.1_83922_84429_-,NA|118aa|up_3|NC_010408.1_84574_84928_+,NA|82aa|up_1|NC_010408.1_85434_85680_+,NA|99aa|up_0|NC_010408.1_85722_86019_-,NA|174aa|down_0|NC_010408.1_86938_87460_+,NA|94aa|down_1|NC_010408.1_87601_87883_-,NA|257aa|down_3|NC_010408.1_89274_90045_+,NA|107aa|down_6|NC_010408.1_90817_91138_-,NA|50aa|down_7|NC_010408.1_93681_93831_-	NA|189aa|up_9|NC_010408.1_81513_82080_+	NA	NA|87aa|up_8|NC_010408.1_82182_82443_-	NA	NA|72aa|up_7|NC_010408.1_82600_82816_+	NA	NA|176aa|up_6|NC_010408.1_82821_83349_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|77aa|up_5|NC_010408.1_83449_83680_+	NA	NA|169aa|up_4|NC_010408.1_83922_84429_-	NA	NA|118aa|up_3|NC_010408.1_84574_84928_+	NA	NA|127aa|up_2|NC_010408.1_84995_85376_+	pfam12957, DUF3846, Domain of unknown function (DUF3846)	NA|82aa|up_1|NC_010408.1_85434_85680_+	NA	NA|99aa|up_0|NC_010408.1_85722_86019_-	NA	NA|174aa|down_0|NC_010408.1_86938_87460_+	NA	NA|94aa|down_1|NC_010408.1_87601_87883_-	NA	NA|287aa|down_2|NC_010408.1_88264_89125_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|257aa|down_3|NC_010408.1_89274_90045_+	NA	NA|63aa|down_4|NC_010408.1_90206_90395_-	cd11586, VbhA_like, VbhA antitoxin and related proteins	NA|76aa|down_5|NC_010408.1_90412_90640_-	cd11586, VbhA_like, VbhA antitoxin and related proteins	NA|107aa|down_6|NC_010408.1_90817_91138_-	NA	NA|50aa|down_7|NC_010408.1_93681_93831_-	NA	NA|NA	NA	NA|NA	NA
