The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	3258645	112655	122632	3258645	tRNA,protease	Pandoravirus(25.0%)	9	NA	NA
WP_012297577.1|112655_113189_+	O-acetyl-ADP-ribose deacetylase	NA	F1SVT2	Red_sea_bream_iridovirus	50.0	2.9e-28
WP_041464794.1|114018_115314_+	peptidoglycan DD-metalloendopeptidase family protein	NA	G9BW84	Planktothrix_phage	46.1	6.1e-16
WP_049791875.1|115327_116722_+	C40 family peptidase	NA	A0A0A8WIF2	Clostridium_phage	43.5	2.4e-10
WP_012297580.1|116845_117373_-	inorganic diphosphatase	NA	A0A1B1ISK6	uncultured_Mediterranean_phage	44.4	4.4e-29
WP_012297581.1|117427_118453_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_012297582.1|118454_119006_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	31.5	5.2e-09
WP_012297583.1|119163_121164_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQ50	Micromonas_sp._RCC1109_virus	45.6	9.8e-106
WP_012297584.1|121169_121760_+	GTP cyclohydrolase I	NA	S4VV34	Pandoravirus	40.1	8.6e-26
WP_041464795.1|121792_122632_+	dihydropteroate synthase	NA	S4VNV0	Pandoravirus	33.4	1.4e-24
>prophage 2
NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	3258645	660036	666931	3258645		Escherichia_phage(50.0%)	8	NA	NA
WP_012298059.1|660036_661176_-	glycosyltransferase family 4 protein	NA	J7Q7I8	Aeropyrum_coil-shaped_virus	28.1	4.3e-05
WP_041464355.1|661267_662014_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.5e-11
WP_012298061.1|661997_662867_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012298062.1|662962_663817_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.2	3.9e-27
WP_012298063.1|663813_664803_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.3	1.6e-72
WP_012298064.1|664980_665433_+	GtrA family protein	NA	NA	NA	NA	NA
WP_012298065.1|665458_666064_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	A0A1D7XFA9	Escherichia_phage	35.4	9.8e-25
WP_012298066.1|666067_666931_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	59.7	2.0e-95
>prophage 3
NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	3258645	1022474	1089708	3258645	transposase,holin	Prochlorococcus_phage(18.18%)	59	NA	NA
WP_076612010.1|1022474_1023641_-|transposase	IS30-like element ISCmi3 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.8	6.0e-39
WP_012297960.1|1023950_1024913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012298392.1|1025037_1025799_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_012298393.1|1025857_1026298_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_012298394.1|1026403_1026673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012298395.1|1026762_1027893_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_041464417.1|1027879_1029115_-	DUF418 domain-containing protein	NA	NA	NA	NA	NA
WP_012298397.1|1029263_1030199_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.7	2.3e-17
WP_012298398.1|1030195_1031059_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012298399.1|1031062_1032391_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_012298400.1|1032387_1033062_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012298401.1|1033370_1034513_+	sugar-binding protein	NA	NA	NA	NA	NA
WP_012298402.1|1034635_1036180_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	2.3e-17
WP_012298403.1|1036176_1037385_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_041464418.1|1037499_1037784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012298405.1|1037784_1038585_-	signal peptidase I	NA	NA	NA	NA	NA
WP_012298406.1|1038610_1039513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012298407.1|1039509_1040112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012298408.1|1040203_1040749_-	alternate-type signal peptide domain-containing protein	NA	NA	NA	NA	NA
WP_041464419.1|1041106_1042753_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	30.5	3.3e-22
WP_041464420.1|1042889_1044719_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.9	2.4e-18
WP_041464421.1|1044846_1045860_+	NAD(+)/NADH kinase	NA	NA	NA	NA	NA
WP_012298412.1|1045915_1047094_+	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	36.0	1.6e-55
WP_041464422.1|1047223_1048327_-	acyl-CoA desaturase	NA	A6N231	Microbacterium_phage	56.5	1.3e-107
WP_041464890.1|1048655_1049699_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	25.3	6.2e-11
WP_012298415.1|1049749_1050481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012298416.1|1050625_1051273_+	DinB family protein	NA	NA	NA	NA	NA
WP_049791880.1|1051309_1052311_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041464423.1|1052370_1055397_-	alpha-mannosidase	NA	NA	NA	NA	NA
WP_012298418.1|1055533_1056364_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_041464424.1|1056452_1057475_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_041464425.1|1057477_1058869_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_041464426.1|1059108_1060374_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_012298422.1|1060546_1061692_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_049791985.1|1061715_1061970_+	CDGSH iron-sulfur domain-containing protein	NA	NA	NA	NA	NA
WP_012296866.1|1062075_1063038_+|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
WP_012298424.1|1063048_1064362_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_049791986.1|1064580_1065015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041464428.1|1065045_1066275_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_012298427.1|1066384_1066879_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012298428.1|1066894_1067692_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_041464429.1|1070658_1070877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012298431.1|1070893_1071814_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.7	2.3e-41
WP_012298432.1|1071810_1073061_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_012298433.1|1073440_1073821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012298434.1|1073879_1074188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041464430.1|1074239_1075700_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	38.9	8.3e-78
WP_012298436.1|1075789_1076899_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	36.4	6.3e-46
WP_012037444.1|1077040_1077250_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_012298438.1|1077459_1078590_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012298439.1|1078922_1079486_-	DUF3618 domain-containing protein	NA	NA	NA	NA	NA
WP_012298440.1|1079482_1079902_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_012298441.1|1079898_1080795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012298442.1|1080942_1083003_-	APC family permease	NA	NA	NA	NA	NA
WP_012298443.1|1083091_1083757_-	membrane protein	NA	NA	NA	NA	NA
WP_049791900.1|1083820_1085263_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_041464431.1|1085359_1086457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012298446.1|1086566_1088648_+	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_012296860.1|1088745_1089708_+|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	3258645	1545093	1600188	3258645	tRNA,protease,transposase	Agrobacterium_phage(22.22%)	42	NA	NA
WP_012298852.1|1545093_1546758_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012298853.1|1546769_1547600_+	DUF2993 domain-containing protein	NA	NA	NA	NA	NA
WP_012298854.1|1547758_1549258_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_012298855.1|1549254_1550586_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_012298856.1|1550585_1551662_+	threonine synthase	NA	NA	NA	NA	NA
WP_041464940.1|1551673_1552624_+	homoserine kinase	NA	NA	NA	NA	NA
WP_012296866.1|1552634_1553597_-|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
WP_012298858.1|1553993_1556543_+	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_012298859.1|1556548_1557628_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_012298860.1|1557652_1558528_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_012298861.1|1558567_1559221_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_041464513.1|1559304_1560255_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	36.3	9.6e-19
WP_012298863.1|1560251_1561571_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_012298864.1|1561567_1562038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012296860.1|1562135_1563098_+|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
WP_012298865.1|1563151_1563547_-	globin	NA	NA	NA	NA	NA
WP_012298866.1|1563546_1564890_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_012298867.1|1565047_1567591_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	29.5	1.8e-40
WP_012298868.1|1567743_1568370_+	DsbA family protein	NA	NA	NA	NA	NA
WP_012298869.1|1568483_1568972_+	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
WP_012298870.1|1568978_1569968_+	DNA glycosylase	NA	A0A1V0CNR6	Kaumoebavirus	30.3	4.2e-09
WP_012298871.1|1570086_1570572_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_041464514.1|1570714_1576129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012298873.1|1576697_1578140_+	trigger factor	NA	NA	NA	NA	NA
WP_012038150.1|1578339_1578927_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	50.8	2.0e-43
WP_012038151.1|1578962_1579643_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	45.0	7.8e-39
WP_012298875.1|1579707_1580850_-	dimethyl sulfone monooxygenase SfnG	NA	NA	NA	NA	NA
WP_012298876.1|1581016_1582297_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.4	1.7e-135
WP_012298877.1|1582378_1584442_-	M3 family metallopeptidase	NA	A0A1V0SID3	Klosneuvirus	23.2	4.3e-32
WP_012298878.1|1584481_1585285_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_012298879.1|1585366_1585630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012298880.1|1585629_1586082_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012298881.1|1586078_1588724_-|tRNA	valine--tRNA ligase	tRNA	A0A2K9KZB8	Tupanvirus	35.8	3.9e-150
WP_012298882.1|1588871_1590815_-	phosphoenolpyruvate carboxykinase (GTP)	NA	NA	NA	NA	NA
WP_041464515.1|1590924_1592352_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012298884.1|1592370_1594035_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.2	7.8e-16
WP_012298885.1|1594031_1594892_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_165770255.1|1594888_1595917_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_012298887.1|1595961_1597608_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_041464516.1|1597712_1598318_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041464517.1|1598370_1599108_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012298890.1|1599225_1600188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	3258645	1950401	2029504	3258645	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(25.0%)	60	NA	NA
WP_012299189.1|1950401_1952174_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012299190.1|1952205_1953219_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_041464574.1|1953215_1955897_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_012299192.1|1955904_1956936_-	3-oxoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_012299193.1|1957042_1958188_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_174270082.1|1958283_1959708_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_041464576.1|1959845_1961093_+	serine/threonine protein kinase	NA	A0A2K9L4D5	Tupanvirus	24.3	7.7e-16
WP_106408682.1|1961113_1961767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012299197.1|1961964_1963047_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_012299198.1|1963055_1964078_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_012299199.1|1964343_1965306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012299200.1|1965994_1966849_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_041464578.1|1966874_1967657_-	DUF4184 family protein	NA	NA	NA	NA	NA
WP_012299202.1|1967797_1969555_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.2	4.1e-55
WP_076612010.1|1969851_1971018_+|transposase	IS30-like element ISCmi3 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.8	6.0e-39
WP_133064086.1|1971382_1972033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299205.1|1972230_1972797_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_106408683.1|1972862_1973657_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012299207.1|1973673_1974990_-	carboxylesterase family protein	NA	A0A1S5V000	Saudi_moumouvirus	35.3	3.8e-21
WP_012299208.1|1975067_1975694_+	TetR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012299209.1|1975690_1976128_-	low molecular weight phosphatase family protein	NA	NA	NA	NA	NA
WP_174270096.1|1976267_1976591_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA	NA
WP_012299211.1|1976587_1977298_+	cation transporter	NA	NA	NA	NA	NA
WP_041464980.1|1981137_1981431_+	DUF3817 domain-containing protein	NA	NA	NA	NA	NA
WP_012299213.1|1981441_1982104_-	YitT family protein	NA	NA	NA	NA	NA
WP_012299214.1|1982230_1982755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049791920.1|1982751_1983210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299216.1|1983257_1983749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086935959.1|1983833_1984187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299217.1|1984187_1987322_-	TD repeat-containing membrane-anchored protein	NA	NA	NA	NA	NA
WP_012299218.1|1987340_1990652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299219.1|1990818_1991700_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_012299220.1|1991794_1992493_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_012299221.1|1992489_1993479_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_041464583.1|1993607_1994189_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041464584.1|1994185_1995907_+	AarF/ABC1/UbiB kinase family protein	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	27.9	6.8e-39
WP_086935902.1|1996060_1996639_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012299223.1|1996840_1999756_-	UPF0182 family protein	NA	NA	NA	NA	NA
WP_012299224.1|1999883_2000975_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_012299225.1|2001188_2002604_+|protease	zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_012299227.1|2003520_2005443_-	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	24.6	1.9e-37
WP_041464585.1|2005453_2006407_-	NAD(+) diphosphatase	NA	NA	NA	NA	NA
WP_012299229.1|2006547_2007624_+	phosphotransferase	NA	NA	NA	NA	NA
WP_041464586.1|2007536_2010758_-	ATP-dependent helicase	NA	A0A2H4GYC0	Pseudomonas_phage	29.3	6.4e-06
WP_012299231.1|2010793_2014063_-	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_012299232.1|2014256_2014481_+	DUF3107 domain-containing protein	NA	NA	NA	NA	NA
WP_012299233.1|2014492_2014780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012299234.1|2014856_2015585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299235.1|2015725_2017288_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	3.7e-52
WP_012296860.1|2017385_2018348_+|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
WP_012299236.1|2018455_2019331_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_041464587.1|2020531_2022151_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_012299238.1|2022208_2022874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041464588.1|2022933_2024280_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_012299240.1|2024263_2024815_+	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_012299241.1|2024804_2025980_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA	NA
WP_041464589.1|2026317_2027235_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012299244.1|2027273_2027648_-	translocase	NA	NA	NA	NA	NA
WP_012299245.1|2027799_2028432_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_012299246.1|2028541_2029504_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	3258645	2283209	2366770	3258645	protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	58	NA	NA
WP_012299470.1|2283209_2284172_-|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
WP_106408686.1|2284269_2285481_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	30.1	2.7e-34
WP_012299472.1|2290300_2290699_+	DUF2256 and DUF3253 domain-containing protein	NA	NA	NA	NA	NA
WP_012299473.1|2290716_2291115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012299474.1|2291111_2292191_-	FUSC family protein	NA	NA	NA	NA	NA
WP_012296866.1|2292331_2293294_-|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
WP_041465003.1|2293391_2294414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012299476.1|2294516_2294948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012299477.1|2295057_2296536_+	DUF2079 domain-containing protein	NA	NA	NA	NA	NA
WP_041464630.1|2296632_2298090_-	citrate:proton symporter	NA	NA	NA	NA	NA
WP_012299480.1|2300159_2300825_+	response regulator	NA	NA	NA	NA	NA
WP_012299481.1|2300871_2301219_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_086935961.1|2301573_2301984_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_012299483.1|2303466_2304372_+	alpha/beta fold hydrolase	NA	A0A2K9VI81	Mycobacterium_phage	27.1	3.3e-08
WP_012299484.1|2304517_2306041_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA	NA
WP_041464631.1|2306113_2306842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041464632.1|2306857_2307061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012299486.1|2307409_2308072_-	HEAT repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012299487.1|2308138_2309248_-	VIT1/CCC1 transporter family protein	NA	NA	NA	NA	NA
WP_012299488.1|2309516_2310386_-	M56 family metallopeptidase	NA	NA	NA	NA	NA
WP_012039555.1|2310453_2310915_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012299489.1|2311039_2311741_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_012299490.1|2312132_2312828_-	endonuclease NucS	NA	NA	NA	NA	NA
WP_012299491.1|2312938_2313199_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_041465007.1|2313226_2314129_-	DMT family transporter	NA	NA	NA	NA	NA
WP_158309440.1|2314260_2314752_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_012299494.1|2314796_2315315_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012299495.1|2315325_2316288_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012299496.1|2316498_2317461_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012299497.1|2317457_2317949_-	OsmC family protein	NA	NA	NA	NA	NA
WP_041464634.1|2318020_2319436_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	24.8	4.2e-18
WP_012299499.1|2319435_2320446_+	asparaginase	NA	NA	NA	NA	NA
WP_012299500.1|2320435_2323870_-	cell division protein FtsK	NA	NA	NA	NA	NA
WP_012299502.1|2326470_2328048_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_041464635.1|2328044_2329055_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_012299504.1|2329115_2335139_-	tandem-95 repeat protein	NA	NA	NA	NA	NA
WP_012299505.1|2336851_2338177_-	citrate synthase	NA	NA	NA	NA	NA
WP_012299506.1|2338339_2339464_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
WP_012299507.1|2339469_2339790_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_012299508.1|2339830_2341189_-	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_012299509.1|2341368_2342268_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_012299510.1|2342338_2343556_+	EfeM/EfeO family lipoprotein	NA	NA	NA	NA	NA
WP_012299511.1|2343555_2344908_+	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
WP_041464636.1|2344937_2345447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299513.1|2345453_2347361_-	translational GTPase TypA	NA	NA	NA	NA	NA
WP_012299514.1|2347475_2349329_-	ABC transporter family substrate-binding protein	NA	NA	NA	NA	NA
WP_012299515.1|2349428_2351120_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	1.7e-26
WP_012299516.1|2351191_2351797_+	PH domain-containing protein	NA	NA	NA	NA	NA
WP_041464637.1|2353033_2354563_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012299519.1|2356870_2357686_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_012299520.1|2357793_2358201_+	DUF485 domain-containing protein	NA	NA	NA	NA	NA
WP_174270083.1|2358221_2359820_+	cation/acetate symporter ActP	NA	NA	NA	NA	NA
WP_012299522.1|2359920_2362896_-	aminomethyl-transferring glycine dehydrogenase	NA	M4QFZ1	Prochlorococcus_phage	49.5	5.5e-246
WP_012299523.1|2362892_2363264_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_012299524.1|2363260_2364460_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_012299525.1|2364829_2365285_-	SseB family protein	NA	NA	NA	NA	NA
WP_012038889.1|2365412_2365784_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
WP_012299444.1|2365807_2366770_-|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	3258645	2464945	2532266	3258645	transposase	Catovirus(25.0%)	54	NA	NA
WP_012299614.1|2464945_2465908_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012299615.1|2465920_2466736_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_049791931.1|2467664_2468108_+	DoxX family protein	NA	NA	NA	NA	NA
WP_012299618.1|2468284_2470531_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_012299619.1|2470571_2470901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299620.1|2470900_2471455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299621.1|2471681_2473406_+	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA	NA
WP_012299622.1|2473405_2474410_+	putative sulfate exporter family transporter	NA	NA	NA	NA	NA
WP_012299623.1|2474538_2474910_-	VOC family protein	NA	NA	NA	NA	NA
WP_012299624.1|2474986_2475694_-	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	27.1	1.7e-07
WP_041464653.1|2477143_2477902_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_012298215.1|2477912_2478875_-|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
WP_012299626.1|2479022_2479532_-	DUF427 domain-containing protein	NA	NA	NA	NA	NA
WP_012039092.1|2479716_2479977_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_175577016.1|2479983_2480790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012299628.1|2480799_2482167_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_012299629.1|2482204_2482603_+	SdpI family protein	NA	NA	NA	NA	NA
WP_012296866.1|2482641_2483604_-|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
WP_012299630.1|2483701_2484808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106408689.1|2484804_2485596_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012299632.1|2485592_2486402_-	NAD(P)-dependent oxidoreductase	NA	M4QPK0	Synechococcus_phage	29.8	4.2e-07
WP_106408690.1|2486515_2487862_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012299634.1|2487858_2488821_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_012299635.1|2488817_2489723_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_012299636.1|2489727_2490960_+	glucarate dehydratase	NA	NA	NA	NA	NA
WP_012299637.1|2490959_2491904_+	5-dehydro-4-deoxyglucarate dehydratase	NA	NA	NA	NA	NA
WP_012299638.1|2492005_2492968_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012299639.1|2492964_2494896_-	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_012299640.1|2494935_2496102_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA	NA
WP_049792007.1|2496996_2498583_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	1.2e-18
WP_012299642.1|2498719_2502538_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	27.6	5.5e-49
WP_012299643.1|2502756_2504463_+	allantoin permease	NA	NA	NA	NA	NA
WP_041464654.1|2504528_2505263_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012299645.1|2505362_2508992_+	urea carboxylase	NA	NA	NA	NA	NA
WP_012299646.1|2509053_2510835_+	allophanate hydrolase	NA	NA	NA	NA	NA
WP_041464655.1|2510879_2511320_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_012299648.1|2511327_2512173_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_049791932.1|2512201_2512735_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012039117.1|2512868_2513864_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A1W6DWY8	Sphingobium_phage	30.0	2.0e-35
WP_012299650.1|2514028_2516533_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	35.6	4.2e-122
WP_012299651.1|2517411_2518623_+	MFS transporter	NA	NA	NA	NA	NA
WP_012299652.1|2518721_2519201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012299653.1|2519269_2520262_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_041464656.1|2520271_2520865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012299655.1|2521420_2522599_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_086935954.1|2522671_2523838_-|transposase	IS30-like element ISCmi3 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	35.8	6.0e-39
WP_041465025.1|2524313_2525006_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041464657.1|2525054_2525852_-	triosephosphate isomerase	NA	NA	NA	NA	NA
WP_012299658.1|2525856_2526318_-	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
WP_041464658.1|2526368_2528105_-	dihydroxyacetone kinase family protein	NA	NA	NA	NA	NA
WP_012299660.1|2528423_2529185_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012299661.1|2529238_2530162_-	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	24.5	4.4e-08
WP_012299662.1|2530158_2531202_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012299003.1|2531303_2532266_-|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NC_010407	Clavibacter michiganensis subsp. sepedonicus, complete genome	3258645	3121766	3180302	3258645	protease,transposase	Staphylococcus_phage(20.0%)	59	NA	NA
WP_012300182.1|3121766_3122417_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_158309448.1|3122432_3123284_-	methyltransferase	NA	NA	NA	NA	NA
WP_158309449.1|3123280_3124000_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_012300185.1|3124026_3124848_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA	NA
WP_041464757.1|3126204_3127182_-	TOMM precursor leader peptide-binding protein	NA	NA	NA	NA	NA
WP_012300187.1|3127178_3127907_-	hydroxylase	NA	NA	NA	NA	NA
WP_012300188.1|3127903_3128671_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_086935936.1|3128667_3129594_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.2	7.2e-11
WP_086935937.1|3129729_3129867_+	plantazolicin family TOMM peptide	NA	NA	NA	NA	NA
WP_012300190.1|3130331_3131198_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_012300191.1|3131318_3132590_-	MFS transporter	NA	NA	NA	NA	NA
WP_049791959.1|3132682_3133072_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012300193.1|3133177_3134041_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012300194.1|3134104_3135010_-	homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_041464758.1|3135183_3135693_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012300196.1|3135731_3136430_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_106408783.1|3136973_3137435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158309450.1|3138219_3138393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012300200.1|3138458_3138995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041464760.1|3139076_3139427_-	Lsr2 family protein	NA	A0A160DF84	Gordonia_phage	39.5	1.0e-13
WP_012300202.1|3139568_3139958_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012300203.1|3140133_3140850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041464761.1|3140939_3141125_-	YegP family protein	NA	NA	NA	NA	NA
WP_012300205.1|3141676_3142288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_133064094.1|3142301_3142913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041464763.1|3143068_3143677_-	recombinase family protein	NA	A0JC18	Ralstonia_phage	39.0	4.4e-25
WP_165770258.1|3144054_3144990_+|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_049791960.1|3145442_3145781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158309451.1|3145966_3146818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_133064096.1|3147384_3147807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012300212.1|3147932_3148604_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012300213.1|3148751_3150128_+	cytosine permease	NA	NA	NA	NA	NA
WP_012300214.1|3150124_3150856_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_041464764.1|3152399_3153683_-	nitrate reductase	NA	Q9KX94	Enterobacteria_phage	43.6	6.1e-77
WP_012300216.1|3153927_3154890_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012300217.1|3154900_3155863_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_012300220.1|3157488_3158298_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_012300221.1|3158342_3159086_-	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_012300222.1|3159139_3160126_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_041464766.1|3160453_3160942_+	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
WP_041464767.1|3161035_3162505_+	cardiolipin synthase	NA	NA	NA	NA	NA
WP_041464768.1|3162578_3163079_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012300226.1|3163202_3163829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012300227.1|3163961_3165332_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_041464769.1|3165423_3166497_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_041464770.1|3166532_3167267_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_012300230.1|3167427_3168702_+	chorismate-binding protein	NA	NA	NA	NA	NA
WP_012300231.1|3168698_3169928_-	MFS transporter	NA	NA	NA	NA	NA
WP_041465115.1|3169924_3170476_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041464771.1|3170573_3171308_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_012300234.1|3171341_3173111_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_012300235.1|3173115_3173550_-	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012300236.1|3173689_3174076_+	DUF4229 domain-containing protein	NA	NA	NA	NA	NA
WP_012300237.1|3174086_3174464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041464772.1|3174469_3175453_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_012300239.1|3175560_3176313_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_012300240.1|3176412_3177321_-	serine hydrolase	NA	NA	NA	NA	NA
WP_012300241.1|3177332_3179315_-	peptidase M13	NA	E3T4I7	Cafeteria_roenbergensis_virus	30.7	9.8e-82
WP_012297689.1|3179339_3180302_-|transposase	IS481-like element IS1121 family transposase	transposase	NA	NA	NA	NA
