The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	17309	98869	2127051	transposase,integrase	Thermus_phage(18.18%)	46	14471:14524	96929:96982
14471:14524	attL	AAATCAAGACATAAAGTTTAATAATCTAAATCAAGACATAAAGTTTAATAATCT	NA	NA	NA	NA
WP_157866275.1|17309_18133_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_157866472.1|18682_19639_-	thioredoxin-disulfide reductase	NA	A0A2K9L162	Tupanvirus	41.4	5.3e-57
WP_011944238.1|19768_20692_-	AEC family transporter	NA	NA	NA	NA	NA
WP_011944239.1|20867_22229_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_011944240.1|22559_23987_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.9	1.3e-35
WP_011944241.1|24078_24882_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_011944242.1|25056_25662_+	major outer membrane protein TSA22	NA	NA	NA	NA	NA
WP_050897477.1|27881_28091_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_050897478.1|28059_28476_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_080571772.1|28778_29750_+|transposase	transposase	transposase	A0A1S7J231	Thermus_phage	30.1	4.3e-22
WP_011944244.1|30178_31996_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	54.4	7.1e-188
WP_011944245.1|32018_33008_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A1B1IW95	uncultured_Mediterranean_phage	50.8	2.2e-98
WP_011944246.1|38068_38404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|39440_39929_+	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944249.1|39928_40219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944250.1|41505_42480_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	6.1e-85
WP_041621046.1|42601_43189_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	40.5	2.6e-06
WP_011944252.1|46762_48487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944253.1|49163_50264_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_157866277.1|52574_53397_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011944255.1|55785_56679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866279.1|59945_60769_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041621170.1|61004_61682_+|integrase	tyrosine-type recombinase/integrase	integrase	B6SD77	Bacteriophage	34.6	1.4e-16
WP_011944246.1|61807_62143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|63179_63668_+	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944249.1|63667_63958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944256.1|64852_65236_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944257.1|67087_68359_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_157866281.1|71310_72133_+|transposase	IS5-like element ISOt6 family transposase	transposase	NA	NA	NA	NA
WP_011944258.1|72911_73979_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_080571778.1|74285_75254_+|transposase	transposase	transposase	A0A1S7J231	Thermus_phage	29.8	1.7e-23
WP_157866283.1|75333_75711_+	hypothetical protein	NA	A0A0U4J920	Pseudomonas_phage	52.9	2.1e-25
WP_050897484.1|75731_75941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944260.1|76111_78367_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_080571911.1|78693_80406_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_041621063.1|80626_81823_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011944261.1|83455_83854_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_011944262.1|83941_84520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944263.1|84597_85173_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_050897583.1|85306_86113_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_011944266.1|89264_89768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944267.1|91750_93301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571937.1|93892_94810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944268.1|95038_95590_+	ankyrin repeat domain-containing protein	NA	M1HKG5	Paramecium_bursaria_Chlorella_virus	42.6	1.6e-05
WP_080571781.1|95886_97053_-	reverse transcriptase	NA	NA	NA	NA	NA
96929:96982	attR	AGATTATTAAACTTTATGTCTTGATTTAGATTATTAAACTTTATGTCTTGATTT	NA	NA	NA	NA
WP_157866285.1|98046_98869_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	480258	547953	2127051	transposase,tRNA,integrase	Bacteriophage(25.0%)	45	487867:487919	517170:517222
WP_162097315.1|480258_480960_-|integrase	tyrosine-type recombinase/integrase	integrase	B6SD79	Bacteriophage	26.5	9.9e-13
WP_011944522.1|482872_483172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866317.1|484210_484381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944524.1|485916_486456_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_011944525.1|486589_486922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621127.1|486928_487324_-	hypothetical protein	NA	NA	NA	NA	NA
487867:487919	attL	GGAATGATATTTTCAATAAAGTTATAAAATATTGTTGCATTATTGCTACTGTT	NA	NA	NA	NA
WP_011944526.1|489025_490429_-	sodium:pantothenate symporter	NA	NA	NA	NA	NA
WP_011944527.1|490444_491707_-	MFS transporter	NA	NA	NA	NA	NA
WP_162097307.1|495431_495665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944528.1|495995_496394_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_011944529.1|496481_497054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944531.1|498903_499596_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011944350.1|501542_501863_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944249.1|502819_503110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|503109_503598_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944246.1|504634_504970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162097315.1|505061_505763_-|integrase	tyrosine-type recombinase/integrase	integrase	B6SD79	Bacteriophage	26.5	9.9e-13
WP_080571808.1|508604_509771_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_157866319.1|511263_512086_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_173361676.1|512968_513709_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_050897511.1|514638_515070_+|integrase	site-specific integrase	integrase	Q859H7	Micromonospora_phage	35.4	1.2e-05
WP_011944533.1|515072_515543_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_041621135.1|517684_519160_-	NTP/NDP exchange transporter	NA	NA	NA	NA	NA
517170:517222	attR	AACAGTAGCAATAATGCAACAATATTTTATAACTTTATTGAAAATATCATTCC	NA	NA	NA	NA
WP_011944535.1|519313_519841_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_050897592.1|519883_520165_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_011944537.1|520239_520596_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_011944538.1|520888_521638_+	winged helix-turn-helix domain-containing protein	NA	W8CYM9	Bacillus_phage	28.4	3.4e-11
WP_011944539.1|521743_523414_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.6	4.7e-45
WP_011944540.1|523914_525405_-	trigger factor	NA	NA	NA	NA	NA
WP_011944541.1|525556_526723_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_011944542.1|526885_528778_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	30.6	1.0e-88
WP_011944543.1|529223_529430_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_011944544.1|529449_529815_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_157866321.1|530322_530469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866281.1|532074_532898_-|transposase	IS5-like element ISOt6 family transposase	transposase	NA	NA	NA	NA
WP_080571917.1|533351_533612_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011944546.1|535812_536139_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_011944547.1|536147_536315_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_080571808.1|537205_538372_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_173361688.1|539398_540244_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_041621446.1|540448_541204_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_011944550.1|541224_542997_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011944551.1|543162_543507_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	34.3	3.4e-14
WP_041621140.1|543507_544944_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_041621141.1|545283_547953_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	37.3	2.0e-69
>prophage 4
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	554781	647989	2127051	transposase,tRNA,integrase	Wolbachia_phage(20.0%)	56	597145:597204	646595:646742
WP_011944561.1|554781_556728_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	38.0	2.6e-119
WP_011944562.1|556978_558319_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_011944563.1|558421_559453_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_041621143.1|559701_562341_+	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_080571810.1|562706_562853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173361689.1|563662_565492_-	AAA family ATPase	NA	A0A285PXL3	Cedratvirus	24.6	3.1e-13
WP_011944565.1|567295_567781_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_157866486.1|573044_574181_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_011944567.1|574201_575014_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_080571811.1|575024_575999_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_011944569.1|575976_576888_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_041621449.1|576856_578329_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_011944571.1|578540_579272_-	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_011944572.1|579499_581098_-	type-specific antigen TSA56	NA	NA	NA	NA	NA
WP_011944573.1|581645_582524_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_011944574.1|582516_584568_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_011944575.1|584545_585514_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	34.1	2.2e-39
WP_050897503.1|587110_588247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080571791.1|588584_588848_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_011944508.1|588926_589877_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	64.5	5.9e-85
WP_011944576.1|593412_593988_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	1.3e-05
WP_011944577.1|594027_594672_+	ankyrin repeat domain-containing protein	NA	K7Y837	Megavirus	33.1	4.1e-13
WP_011944578.1|594774_595278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621069.1|595790_596162_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011944282.1|596184_597066_+	sensor histidine kinase	NA	NA	NA	NA	NA
597145:597204	attL	ATTAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTATAAATGCCAGAGATCAAAT	NA	NA	NA	NA
WP_157866275.1|597166_597990_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080571920.1|598363_598837_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011944637.1|599330_599795_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_041621046.1|600348_600936_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	40.5	2.6e-06
WP_011944581.1|601057_601984_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	A0A1B2LRR6	Wolbachia_phage	62.0	2.6e-85
WP_080571791.1|602062_602326_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_080571813.1|602751_603240_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011944582.1|604220_604820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944583.1|604849_605290_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_173361672.1|607080_607224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050897514.1|607258_608131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080571921.1|608351_610115_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_011944584.1|610165_611077_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_162097308.1|615171_615348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944349.1|617482_619144_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_011944350.1|619166_619487_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944586.1|620782_621598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621152.1|623198_623600_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_041621153.1|623605_624544_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944588.1|624601_624934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944589.1|625069_625558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944590.1|626106_626442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571820.1|631682_632687_+|integrase	site-specific integrase	integrase	A0A077KGX2	Edwardsiella_phage	24.3	2.3e-10
WP_041621159.1|636585_637098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866325.1|637581_637734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944593.1|641054_642533_+	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	26.3	2.4e-32
WP_173361690.1|642696_644091_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_011944595.1|644160_644838_-	histidine phosphotransferase	NA	NA	NA	NA	NA
WP_157866327.1|645619_646442_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080571821.1|646774_646972_+	hypothetical protein	NA	NA	NA	NA	NA
646595:646742	attR	ATTTGATCTCTGGCATTTATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTAATGAAGTTTGCGTATAAAATATCCTGTTGGTAAATCTTATGATGCTATTGTCGCTTTTTTCTATGCTCAAACCTCATTGTAAATGACTAT	NA	NA	NA	NA
WP_050897517.1|647224_647989_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	753329	842865	2127051	transposase,tRNA,integrase	Moraxella_phage(22.22%)	53	796950:797009	853259:854408
WP_157866337.1|753329_754153_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011944648.1|754917_757206_-	DNA translocase FtsK 4TM domain-containing protein	NA	A0A218M9A2	Mycobacterium_phage	43.0	3.0e-74
WP_011944649.1|757296_757668_-	DUF2672 domain-containing protein	NA	NA	NA	NA	NA
WP_011944650.1|757700_759368_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	28.1	2.8e-45
WP_011944651.1|759508_760342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571833.1|760728_760968_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011944652.1|762806_764159_+	signal recognition particle protein	NA	D6PHS7	uncultured_phage	26.1	8.6e-05
WP_011944653.1|764214_764571_+	divalent-cation tolerance protein CutA	NA	NA	NA	NA	NA
WP_011944654.1|765323_766154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944655.1|766360_767026_+	guanylate kinase	NA	A0A223FN12	Murmansk_poxvirus	31.2	1.1e-13
WP_011944656.1|767159_767534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944657.1|767524_769804_+	cell surface protein	NA	NA	NA	NA	NA
WP_157866492.1|771184_772030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866327.1|773292_774114_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041621197.1|775363_776041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621063.1|776222_777419_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011944261.1|779054_779453_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_011944262.1|779540_780119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944658.1|780196_780772_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	30.9	1.3e-05
WP_080571834.1|783480_784005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866341.1|784400_785224_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_173361692.1|785939_786686_-	rhodanese domain-containing protein	NA	NA	NA	NA	NA
WP_011944661.1|786801_787437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621201.1|789695_790850_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_173361677.1|793440_794007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173361693.1|794225_795155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944664.1|795885_798006_+	hypothetical protein	NA	NA	NA	NA	NA
796950:797009	attL	TGCAGTCATATTGGAATCTACTAAGAAAAAAATATTACAGCTTACTAAAGTTAGCAGTAT	NA	NA	NA	NA
WP_011944665.1|798295_799102_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	33.1	5.6e-28
WP_050897583.1|800615_801422_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_011944668.1|801555_802125_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_041621203.1|802148_802661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571835.1|802813_803092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173361682.1|803890_804355_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_041621197.1|806547_807225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944671.1|809269_810226_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011944350.1|814236_814557_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944249.1|815513_815804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|815803_816292_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944246.1|817328_817664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571797.1|817789_819028_-|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_011944470.1|819158_819359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944672.1|819657_823095_-	response regulator	NA	Q8QKV7	Ectocarpus_siliculosus_virus	22.7	4.3e-08
WP_011944673.1|823733_825293_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_011944674.1|825466_826363_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_011944675.1|826663_827884_+	MFS transporter	NA	NA	NA	NA	NA
WP_157866345.1|828845_829668_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_108883849.1|833849_833972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944677.1|834315_836184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944678.1|836750_837764_-	serine/threonine dehydratase	NA	NA	NA	NA	NA
WP_041621473.1|837901_840241_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	43.2	5.4e-172
WP_011944680.1|840317_840968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866347.1|841097_841844_-	ComF family protein	NA	NA	NA	NA	NA
WP_011944682.1|841827_842865_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
853259:854408	attR	ATACTGCTAACTTTAGTAAGCTGTAATATTTTTTTCTTAGTAGATTCCAATATGACTGCATCTCGTGTGTTACAATATACTTCGGAATTAATAAATACAGTATATGGATCTATATTTTCTTCTCCTTCTGGATTATAAGGAGGAGGCGAAGCGCTTCTTGAATTCTCCTCATTATCTTCAGCAGGAAGTTCTGGTTTCAATAATAACTCCTTAACATTATTAGGTAGGCCTTCAAAGTATGATTGATAATCATATGTATCGATTTGCTCGCATAATAGCGGAATAAGGCTATCATGTACCGATGTTAAACTTTGAACGTCTGGTTTATAGTCTTGTAAATCAATTCCAAATTTTATTAATATCTTTGCAACTAATAAATGAATATCATGGTAAACCATATATCCATAATGTCCAATAGATTGACCACTTTGCAACTCTTCAAAATTATTCATAACCATATCAATTCCATCATATAAATTATAGAATTTTCTTTGAAAGAGCATTTCTGCTAAATTATTAGCGCACTTTGAGTTTTCATCTATTAGACTCAAATGTTTTTCTAAAAAAAGTTCTACTTTTCTTACTTCAGTACTAGTTAAGTTACCGCTAGACATTCTGATGGTACCTGCTATAAGGCTTTCTGCTATCTCATTTTGATTAAGTTGAAAGTTTTTAATAAACCATTCTGCAGACTGTACTAAATTTCTCTGTATAATTTTTGTTAGTATAGTAGTATGATCATATCCTTCATCATTATAATGTACTGGAAACTTATCTTTAGTGCTGTTAAGTAGCAAATTAGTGTAGTCATCTGAATAAAGTTTAGCCTTTTCATCAAGAGAAAGATATTTTTTTGATATACGTAATGCAGTATTATCGTACTCCTCAGTAGTTAAATCAGTACGTTTAGTATCATAAATCCACATTGTGGCAGGCATACCATGCTCATCTTTAGCACTGATATCAGCTTCAAGAATCAATAGAGCTTCGATGATGTCCTCTCTTAGATACTTAAACGCTCTTATGAGTAGTGTATCATTGTTTGCTTGAGATCTGGTATAAACTAATTTAGGATGCAAGGCTGTTAATTCTAGAAGAGCGGCCTTATTACCTGCTTGCACATACCCAAAAGCCTCTCTTCGTATTTCAT	NA	NA	NA	NA
>prophage 7
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	851114	921136	2127051	protease,transposase,tRNA,integrase	uncultured_virus(20.0%)	55	902322:902355	931516:931549
WP_157866351.1|851114_851937_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011944686.1|852261_854418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866353.1|855012_855150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173361678.1|855962_856250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944687.1|857765_858722_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011944349.1|861042_862704_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_011944350.1|862726_863047_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944249.1|864003_864294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|864293_864782_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944688.1|865267_865819_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_011944246.1|865818_866154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162097316.1|866245_866947_-|integrase	tyrosine-type recombinase/integrase	integrase	B6SD79	Bacteriophage	26.5	9.9e-13
WP_050897527.1|866871_867117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621216.1|870118_870775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162097307.1|873540_873774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944690.1|874104_874503_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_080571922.1|874576_874876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173361694.1|876122_876590_-	HD domain-containing protein	NA	A0A1X9SH80	Bradyrhizobium_phage	29.3	3.0e-05
WP_041621217.1|876812_877349_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_080571923.1|877371_877815_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_041621219.1|878053_878764_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_041621477.1|880283_880787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621220.1|880987_881551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944696.1|882854_883205_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_041621479.1|883501_884998_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	34.6	5.2e-27
WP_041621480.1|886028_887483_+	replicative DNA helicase	NA	A0A218KST2	Xenohaliotis_phage	34.6	2.3e-64
WP_011944497.1|887971_889144_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_157866309.1|889229_889442_+	reverse transcriptase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_080571804.1|889571_889802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866351.1|889819_890642_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041621221.1|890986_891271_+	co-chaperone GroES	NA	A0A221S4E4	uncultured_virus	29.2	8.1e-06
WP_011944700.1|891343_893008_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	53.3	7.1e-142
WP_011944701.1|894158_894554_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_011944702.1|894564_896700_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	35.6	1.4e-09
WP_157866356.1|896717_897104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944704.1|897470_898211_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_011944705.1|898384_898714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944706.1|898736_899114_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA	NA
WP_011944707.1|899133_900123_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_011944708.1|900643_900802_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
WP_011944709.1|901226_901751_-	hypothetical protein	NA	NA	NA	NA	NA
902322:902355	attL	ATATAGTCATTTACAATGAAGTTTGCGTATAAAA	NA	NA	NA	NA
WP_080571841.1|904059_905028_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	29.8	3.8e-23
WP_011944711.1|907471_908653_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_011944350.1|910507_910828_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944249.1|911784_912075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|912074_912563_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944688.1|913048_913600_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_011944246.1|913599_913935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571797.1|914060_915299_-|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_011944470.1|915429_915630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866359.1|916175_916904_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_011944713.1|916896_917682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944714.1|917678_918248_-	elongation factor P	NA	NA	NA	NA	NA
WP_011944715.1|918453_919707_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.1	1.7e-119
WP_011944716.1|919834_921136_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
931516:931549	attR	ATATAGTCATTTACAATGAAGTTTGCGTATAAAA	NA	NA	NA	NA
>prophage 8
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	944259	1035902	2127051	transposase,tRNA,integrase	uncultured_Mediterranean_phage(36.36%)	52	951050:951109	1041339:1041411
WP_157866362.1|944259_945082_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041621226.1|945256_946039_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_041621227.1|946685_947258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866365.1|947436_947583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944725.1|947705_948239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173361696.1|948420_949515_+	toprim domain-containing protein	NA	NA	NA	NA	NA
951050:951109	attL	ATACCTTAGAGAATACCGTACTTATTTTCATATAGGTCAGAACTATGGGATTAGTGAAAG	NA	NA	NA	NA
WP_080571844.1|953038_953566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866367.1|953958_954174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866369.1|956234_956657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944727.1|956649_963549_+	hypothetical protein	NA	Q9JMP0	Wolbachia_phage	29.7	1.1e-31
WP_162097308.1|966653_966830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944350.1|970649_970970_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944249.1|971926_972217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|972216_972705_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944688.1|973190_973742_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_011944246.1|973741_974077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162097316.1|974168_974870_-|integrase	tyrosine-type recombinase/integrase	integrase	B6SD79	Bacteriophage	26.5	9.9e-13
WP_050897527.1|974794_975040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944729.1|977496_979233_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	25.8	7.3e-41
WP_011944730.1|979216_979549_-	iron donor protein CyaY	NA	NA	NA	NA	NA
WP_011944731.1|980452_984568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621237.1|987456_987960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944732.1|990099_990489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571845.1|991449_992616_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_011944734.1|993558_993993_-	CopD family protein	NA	NA	NA	NA	NA
WP_011944735.1|994001_995036_-	ferrochelatase	NA	NA	NA	NA	NA
WP_011944736.1|995028_996057_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_041621486.1|997717_999049_+	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_011944739.1|1001544_1002828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944740.1|1003488_1005357_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_011944741.1|1005496_1006150_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	34.1	8.3e-22
WP_011944742.1|1006142_1007216_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_041621239.1|1007286_1007970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944743.1|1007978_1009343_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_041621487.1|1009403_1012073_-	DNA polymerase I	NA	A0A1B1IST8	uncultured_Mediterranean_phage	30.5	1.7e-41
WP_041621488.1|1012520_1013960_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_157866375.1|1014639_1015463_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011944747.1|1015689_1016520_+	thioredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_080571846.1|1018355_1018865_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_041621243.1|1020493_1021420_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	38.6	2.6e-37
WP_011944749.1|1021503_1024173_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.6	3.5e-26
WP_011944750.1|1024225_1025758_-	NTP/NDP exchange transporter	NA	NA	NA	NA	NA
WP_011944751.1|1026122_1026980_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_011944752.1|1026981_1028271_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-99
WP_011944753.1|1028248_1029016_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	38.7	8.0e-32
WP_041621491.1|1029191_1029758_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_011944755.1|1029764_1030562_+	ParA family protein	NA	A0A240F4U1	Ochrobactrum_phage	28.3	1.7e-16
WP_011944756.1|1030573_1031455_+	ParB/RepB/Spo0J family partition protein	NA	S5VTK0	Leptospira_phage	29.1	8.1e-12
WP_080571848.1|1031865_1032249_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011944757.1|1033624_1033906_-	ETC complex I subunit	NA	NA	NA	NA	NA
WP_011944758.1|1033959_1034199_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_157866377.1|1035079_1035902_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
1041339:1041411	attR	ATACCTTAGAGAATACCGTACTTATTTTCATATAGGTCAGAACTATGGGATTAGTGAAAGTTCAGCATATAAA	NA	NA	NA	NA
>prophage 9
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	1052148	1143203	2127051	transposase,tRNA,integrase	Bodo_saltans_virus(11.11%)	60	1104931:1104963	1157667:1157699
WP_011944765.1|1052148_1053015_+|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	33.8	3.8e-22
WP_011944766.1|1053120_1053924_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	32.2	4.6e-30
WP_011944767.1|1054399_1055116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944770.1|1057176_1057752_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.4	9.6e-06
WP_041621251.1|1057788_1058322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944772.1|1058415_1058871_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_080571921.1|1061854_1063618_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_011944584.1|1063668_1064580_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_162097308.1|1068674_1068851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944349.1|1070985_1072647_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_011944350.1|1072669_1072990_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944249.1|1073946_1074237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|1074236_1074725_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944688.1|1075210_1075762_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_011944246.1|1075761_1076097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866315.1|1076188_1076803_-|integrase	tyrosine-type recombinase/integrase	integrase	B6SD79	Bacteriophage	28.3	6.7e-13
WP_050897602.1|1078542_1078917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866379.1|1079239_1080373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173361697.1|1082855_1083197_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_011944775.1|1083216_1085067_-	Fe-S protein assembly chaperone HscA	NA	A0A2P1ELQ7	Moumouvirus	33.9	1.4e-69
WP_011944776.1|1085053_1085557_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_011944777.1|1085568_1085943_-	iron-sulfur cluster assembly accessory protein	NA	A0A1B1IT29	uncultured_Mediterranean_phage	33.3	3.8e-11
WP_011944778.1|1085955_1086381_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	73.0	5.4e-46
WP_050897538.1|1086422_1087694_-	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	39.3	1.0e-36
WP_050897604.1|1087708_1088992_-	cysteine desulfurase	NA	H7BUW1	unidentified_phage	36.9	1.5e-30
WP_011944779.1|1089004_1089451_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_011944780.1|1089655_1090357_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011944781.1|1090650_1091898_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_011944782.1|1091876_1093178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944783.1|1093162_1094914_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_080571820.1|1098609_1099614_-|integrase	site-specific integrase	integrase	A0A077KGX2	Edwardsiella_phage	24.3	2.3e-10
WP_011944785.1|1100844_1102689_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.2	9.9e-36
WP_011944786.1|1102672_1104448_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.2e-68
1104931:1104963	attL	AACTATAGTCATTTACAATGAAGTTTGCGTATA	NA	NA	NA	NA
WP_011944787.1|1105367_1106528_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	34.8	1.1e-24
WP_011944788.1|1106568_1107171_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_080571853.1|1108283_1109450_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_080571854.1|1113359_1114526_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_011944791.1|1115279_1116767_+	ankyrin repeat domain-containing protein	NA	A0A1V0S7Q4	Shearwaterpox_virus	27.2	3.7e-09
WP_157866494.1|1116848_1116992_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_011944792.1|1117554_1119207_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.8	6.5e-47
WP_011944793.1|1119190_1120042_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_041621501.1|1120382_1121243_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_011944795.1|1121239_1122169_+	translation elongation factor Ts	NA	NA	NA	NA	NA
WP_011944796.1|1122248_1124687_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_011944797.1|1124683_1125718_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.2	3.1e-31
WP_157866381.1|1128141_1128297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621170.1|1128752_1129430_+|integrase	tyrosine-type recombinase/integrase	integrase	B6SD77	Bacteriophage	34.6	1.4e-16
WP_011944246.1|1129555_1129891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944688.1|1129890_1130442_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_080571774.1|1130927_1131416_+	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944249.1|1131415_1131706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944350.1|1132662_1132983_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_041621254.1|1134049_1135396_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_050897539.1|1135389_1135866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621255.1|1135859_1136192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866383.1|1136203_1136356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162097309.1|1139836_1140061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162097310.1|1140125_1140281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162097311.1|1140457_1141180_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_080571857.1|1142234_1143203_+|transposase	transposase	transposase	A0A1S7J231	Thermus_phage	29.5	2.5e-22
1157667:1157699	attR	TATACGCAAACTTCATTGTAAATGACTATAGTT	NA	NA	NA	NA
>prophage 10
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	1161255	1226335	2127051	transposase,tRNA,integrase	Moraxella_phage(30.0%)	43	1152115:1152174	1241586:1245209
1152115:1152174	attL	ATTGTATCTGTTTCAAAGCTGTGGTCTGATACCATGTGAGCTACTTTCAATGGATGTGTA	NA	NA	NA	NA
WP_080571857.1|1161255_1162224_-|transposase	transposase	transposase	A0A1S7J231	Thermus_phage	29.5	2.5e-22
WP_162097311.1|1163278_1164001_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_162097310.1|1164177_1164333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162097309.1|1164397_1164622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571926.1|1168611_1168881_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_162097317.1|1169726_1170698_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_157866385.1|1171007_1171830_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080571859.1|1171955_1172924_-|transposase	transposase	transposase	M1NSC9	Streptococcus_phage	24.8	2.1e-05
WP_011944350.1|1175445_1175766_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944813.1|1176775_1177012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571860.1|1177011_1177500_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944688.1|1177985_1178537_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_011944246.1|1178536_1178872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571797.1|1178997_1180236_-|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_109235163.1|1180686_1181331_-	SCO family protein	NA	NA	NA	NA	NA
WP_080571862.1|1182871_1183447_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011944817.1|1187568_1188237_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	47.5	1.2e-36
WP_011944818.1|1188456_1188966_+	CarD family transcriptional regulator	NA	NA	NA	NA	NA
WP_011944819.1|1188989_1190024_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	44.6	6.5e-69
WP_011944820.1|1190036_1190828_+	NAD kinase	NA	NA	NA	NA	NA
WP_011944821.1|1190929_1192153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944822.1|1192139_1192598_-	protein TolR	NA	NA	NA	NA	NA
WP_011944823.1|1192603_1193293_-	protein TolQ	NA	NA	NA	NA	NA
WP_011944824.1|1193456_1194470_+	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_157866389.1|1194690_1194855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944825.1|1195180_1197637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866391.1|1197953_1199058_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_011944826.1|1199208_1201014_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	32.6	3.3e-20
WP_050897503.1|1202654_1203791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866279.1|1204383_1205206_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011944827.1|1207880_1208741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944828.1|1208819_1209287_-	single-stranded DNA-binding protein	NA	A0A1B1IVU7	uncultured_Mediterranean_phage	50.6	3.8e-37
WP_080571863.1|1210259_1211426_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_011944830.1|1211722_1212280_-	ankyrin repeat domain-containing protein	NA	M1HKG5	Paramecium_bursaria_Chlorella_virus	42.6	1.6e-05
WP_157866353.1|1212368_1212506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173361678.1|1213318_1213606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944831.1|1215704_1216184_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_011944832.1|1216230_1217130_+	RNA polymerase sigma factor RpoH	NA	G8CLC7	Synechococcus_phage	26.7	1.6e-10
WP_041621264.1|1218093_1218636_-	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_011944836.1|1222781_1223111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|1223110_1223599_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944246.1|1224635_1224971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571797.1|1225096_1226335_-|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
1241586:1245209	attR	TACACATCCATTGAAAGTAGCTCACATGGTATCAGACCACAGCTTTGAAACAGATACAATAGATTAATTCTAGGAAATAGAATTGACAAAAAGTATAATTAACATTAACTTTATAAAAATATTAAATTAGATAGATACTGATATGAGTATTTTAAAATCACTTTTACAACCGTGTTATGCTGTTATATTAGCATTCGTTGTATTATCTTCACCATCAATATGTACAGCGAATAATAATGTAAACTTCAATACTTCTAAAGTTAGTATTGATACTTCACAATTCTATATAAAATTTTCAACTGGTATTGCTACTAACTACGATACATTAGAAGCTGGAATTGGTTATAGATTAGATCGGCACAGAATGGATATAAGATTAGGATTTATTGGGCATCACAACTGTAGAGATAACTTTGTTCAAGGAAATTATTATTACAATATAATTGAAGGTAACAAAGCATCAATTTTTGTTACAGGTGGCCTAGTATCAGTTTTCAATGGTGATAGTGGTACTGGTATAGATGTAGGAGTTGGTACAACAATAAACTTATCAAGAGATACATATTTAGACATTGAATGTAGCACAATGGCTAACTATAGACCACTTCCTATTCATATACGTTTTGGATGGCGGGTTCACATTTAATAACTAATAAGTTTTATAGTTGGTAATTATTAGCCCATTAACGAGATTGCGTTGTTCATTAATTGAGTATGTAACTCCAATATGAGTGATGAAGAGGTCTTTGTATAAAGCTTTAATAAAGGTAGTGTTATTATTTGAAAGCATAATTTTAACACCTTTATTGTTGAGTTCATAAACAAAATCTCGTAGTCTGATTTGCTCTTTTTCATCAAATGGGACTCTAGTGTAGAACCTTTCTCCTGATTGGTGGTAAGGAGGATCGAAATAAACAAAGTCATTTTGTTGAGGCCCTATAAATGAAAAATCCATTGCGCAAATTGATACATCGGTTAAAAGTTTACTACATTTGTTTATTCTAGAGCAAATATGAAGCTTAAGATATTACTTATCAGAAAATGTTTGAGCGGATGTGCCGTCTCTGTTTAGCCTATAAATTCCCCTAAAGGAATATTTATTAAGATATATAAATTTTGCAGTAATATCGTTAGGATCATTACTATAATAATTGTCCCTTATTTTATAGTAATAATTTTCAGAATGGTTTTTGTGATATAGATTTAGTAATCTATTAACCTCATTTGGATTCTTTTTTACAGCGTTATAACTAGTAATTAAGTTGAGATTAATATCAGACAAAAAACATTGTTTAAACAGATGCCTAACTTGAAAAAATAAAGCCCCACCTCCAAGGAATGGTTCATAGTAATTATAGTATGGCCCTTGAAGGAAGATGCTCTATTAATTTATTAACAATTCTCCTTTTGCCTCCAACCCAGTGAAGAAAAGGCTTTGGTTCATTAGAAATTGCTATTGACACAAGAATTTTTGATTAATTAAATCTCTACTATGAATTATAGTAGAAAATAAGCCTTAAAGCTAGTAATAATAACTGCTGCAGAGCTTTTTTTATAAATCTTTTTTGAATGATGTTTTTGAAGCTAGAGATACAATGTGATAATTTCGCATCTACTTTAAAAAAGATGAAAAAATTTTCAGAAATATTACAAAAAGTCATGTACTGATAAAAATCTAAATGATACTGTATACCTGATGTTATCTGAGATTTAAGATCAGCTAATATTTAGCTAGAGGTTATTTCATTAAAACTTCATAATCTGCTATTAAAGGTATAAATGAATCTCTAGCTACTCTTTAATCACTACTTCAAATAGCAAAAGTAATGCTATGGTTATTAATGGCCTAATTATTTTAGGCTATCTCAATTTATAACTCAAGATTAATAATAAATATATAATTGTTAAATATTATGCGGGATTTTAAAGGGTAAAGTATGCATATACAAGTCTTAAGCGCAGCAAAACACTTGTTCTATCGAATGTTTAACCTTATACAAACAAAATAAAGTAACACAAATTTTTTCAGTTTCACAGGAAAAATGGTTTGCTTTTTTTAATGACTTGCACAGTCATACAGAACAAAAAAATTTAATACAACTTCTAATAACTCATCTTATAAAGATAAAATCTAATTTAAAAACAAATCAGCAAAAAAAGTGTTTAACTGGTTATTTAACTGATCCAAATTATAACTTAACCAGAAAGGAACAAAAATATATTTTAAAATTAATAAATGAAAATGATTTTATTTGGAATAAGAAAGGTCAAAACTTTCTTGATTTTTGTATGTATAAAATTATACGAATGCATTCCATAGCACTTGAAATACCAATCAAAAAATGTTCTAGCAATATGCTAATAAATAAAGGTATCAAACCCTTTCAGGAATTTATTACACCAGAACATTTTAAGAATATAATTTATCTTGAACAAAAACTACTATACCGCACACTTAAGTATGATCATTGCATTAATTCGAAACAAAGAAAAGTAACTATCAAACAACTACTATTGGCTCCAGGACAACTTGAAATAAAAGAAGATCTTAATTCGATAGAGAAAAAAGATTTTGACTTAGTTAATACAGCCCTTGATTTTTATATTTTGGATATTATAGGTCGTTTTAAAGATGTGTTTGAACCTGATGTTTAAATTAAGAGCAAAAAAGATAAGTCCAGAACTTTTTCAGTTAATATACTAAATTATCAAAGTCTTTTTATAACTCAGAATCAATTGTATATCTCATTTTGAAAGATATTTTGTTTTTTTTAGATGTAAATAACAATGCGATAATTTCGCATCAATGTGTAATATTATGAAAAAAAATTTCATAAATATGACAAAAAGTCATGTACTGACAAAAATCGAAATGATACTGTATACCTGATATTATCTGAGATTTAAGATTTAGATAATATTCCGATAGAGATTAAAAGCATATAAACAACTAAATTTATCTTTTTAATCTCTAGCATAACAGTTTTAACACTTAAAACAGCAGGGTAATTCTATGCCTATAGAAGACGAAGGTCAAAATAAAATCAATAAATTAACTGAAAAATTATCTACAGAGGGAATTAATAGCACAACAATAAAACAGATAGATGCTGAAATGCAAAAACTATACTGCCAGCTAGAGGAATCTGAGGAAGTAAGCATAAATTGCATAGAGTGGATACAATATTTTAGGCTAATAGTAAATAACTACGACAGAAAAAAAGTAAATATAATAGCTTCTCTAAGTAGAGTGATTTTTTTTATTTAGACAATACATAGCATCAACAAATGTAAGGATTGAAACATTTAACATAGAATTGCTAATAAATAATACCGTTATCAGAATGAGGAAACATTTTGAAAATGAGAATATAAAGCTAAATGTTCAAAATGACATAAAGACGGTTCTGATTGGAGATAGTTTTAGAATAAAAGCAGTAATAAGTCAGTTAATTGGTAGTGCTATTATAAATAGTAGTAAGCATAGCAAGATTACTATTAACATCAATCAGTATTCAGAAATATTACAATTTACAGTACAAAATATAGTACTAAGCCCTTCTAAAGAAAAATTAGAAAGAATAAATTCCGAACTAGAGAATTTGAATTTGGTAACATATCAAG	NA	NA	NA	NA
>prophage 11
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	1266514	1330891	2127051	protease,transposase,tRNA,integrase	Bacteriophage(16.67%)	47	1286145:1286204	1313772:1313888
WP_041621170.1|1266514_1267192_-|integrase	tyrosine-type recombinase/integrase	integrase	B6SD77	Bacteriophage	34.6	1.4e-16
WP_157866279.1|1267427_1268249_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080571873.1|1270912_1271839_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_011944850.1|1273080_1273650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944851.1|1273902_1274895_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_011944852.1|1274957_1276229_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_157866395.1|1277301_1277400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866498.1|1277408_1277540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944853.1|1277747_1278356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944854.1|1278671_1279598_+	AEC family transporter	NA	NA	NA	NA	NA
WP_050897544.1|1279617_1280919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944857.1|1283280_1284090_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	28.4	5.3e-18
WP_011944858.1|1284093_1284603_-	membrane protein	NA	NA	NA	NA	NA
WP_041621270.1|1284780_1285134_-	ankyrin repeat domain-containing protein	NA	A0A2L2DI10	Acanthamoeba_polyphaga_mimivirus	33.7	1.7e-08
WP_041621271.1|1285099_1285348_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_157866397.1|1285417_1286240_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
1286145:1286204	attL	GTTCAAAATTATTGCTGACAAATATCGAAATAGACGTAAAAGATTCGGTCTTAGATTTAA	NA	NA	NA	NA
WP_080571875.1|1286212_1286689_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_011944528.1|1288960_1289359_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_162097307.1|1289689_1289923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866333.1|1295126_1295225_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_050897596.1|1295263_1295617_-	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_157866502.1|1295778_1296465_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011944350.1|1298733_1299054_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944249.1|1300010_1300301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571774.1|1300300_1300789_-	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944688.1|1301274_1301826_-	conjugative transfer protein	NA	NA	NA	NA	NA
WP_011944246.1|1301825_1302161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571797.1|1302286_1303525_-|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_011944860.1|1303655_1303856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944861.1|1304308_1304725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866399.1|1304684_1305508_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041621276.1|1306775_1307600_+|transposase	IS5-like element ISOt6 family transposase	transposase	NA	NA	NA	NA
WP_011944863.1|1307955_1308807_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_011944864.1|1308813_1309881_-	rod shape-determining protein	NA	NA	NA	NA	NA
WP_011944865.1|1309981_1310212_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_011944866.1|1310181_1310802_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_080571877.1|1311081_1312248_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_011944867.1|1312936_1313557_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	59.3	1.3e-59
WP_011944868.1|1316093_1316888_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
1313772:1313888	attR	TTAAATCTAAGACCGAATCTTTTACGTCTATTTCGATATTTGTCAGCAATAATTTTGAACTACTTTAACCAGTTTCGAAAGAGGTCTAATGTAAGAAAAAGAACTAAAATTAAGATT	NA	NA	NA	NA
WP_157866401.1|1319606_1320430_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080571878.1|1321429_1321564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621283.1|1321793_1321982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944869.1|1324958_1325696_+	response regulator transcription factor	NA	A0A0K0PVG9	Roseobacter_phage	57.7	1.5e-14
WP_011944870.1|1325831_1327568_+	ribonuclease J	NA	NA	NA	NA	NA
WP_011944871.1|1327650_1327950_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_011944872.1|1327949_1329428_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_011944873.1|1329430_1330891_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
>prophage 12
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	1347303	1443185	2127051	transposase,integrase	Anomala_cuprea_entomopoxvirus(20.0%)	52	1369765:1369824	1398507:1398610
WP_157866403.1|1347303_1348126_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080503981.1|1352107_1352215_+	reverse transcriptase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_080571884.1|1352509_1353274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944877.1|1353711_1354317_+	heme ABC exporter ATP-binding protein CcmA	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	4.1e-07
WP_011944878.1|1354313_1354964_+	heme exporter protein CcmB	NA	NA	NA	NA	NA
WP_011944879.1|1355117_1356257_+	DUF2670 domain-containing protein	NA	NA	NA	NA	NA
WP_173361698.1|1356506_1357034_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_011944881.1|1357188_1358385_+	cytochrome b N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_162097319.1|1359936_1362366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621291.1|1362705_1363989_-	amino acid permease	NA	NA	NA	NA	NA
WP_011944885.1|1365613_1366420_-	uracil-DNA glycosylase	NA	A0A127AW33	Bacillus_phage	33.1	3.7e-11
WP_080571797.1|1368399_1369638_+|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
1369765:1369824	attL	ATGAGATTTCTCATTCTGCTACTGCGATTTTCAAAAATTTACAAAATCTAATGTAGAGTA	NA	NA	NA	NA
WP_162097315.1|1369869_1370571_-|integrase	tyrosine-type recombinase/integrase	integrase	B6SD79	Bacteriophage	26.5	9.9e-13
WP_011944886.1|1372233_1373175_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_041621292.1|1373122_1373746_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_011944888.1|1373742_1375446_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_011944889.1|1377192_1378611_-	amino acid permease	NA	NA	NA	NA	NA
WP_041621293.1|1378902_1379427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621520.1|1379456_1381862_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.1	5.5e-111
WP_011944892.1|1381996_1382857_+	TIGR01459 family HAD-type hydrolase	NA	NA	NA	NA	NA
WP_011944893.1|1383419_1383749_+	monovalent cation/H(+) antiporter subunit G	NA	NA	NA	NA	NA
WP_011944894.1|1383745_1384336_+	DUF4040 domain-containing protein	NA	NA	NA	NA	NA
WP_011944895.1|1384356_1384791_+	Na(+)/H(+) antiporter subunit B	NA	NA	NA	NA	NA
WP_011944896.1|1384768_1385170_+	cation:proton antiporter subunit C	NA	NA	NA	NA	NA
WP_011944897.1|1385162_1386653_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_011944898.1|1386662_1388135_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_080571886.1|1389458_1389899_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_157866407.1|1389858_1390684_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011944900.1|1391974_1394113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866353.1|1394707_1394845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173361678.1|1395657_1395945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944246.1|1398552_1398888_+	hypothetical protein	NA	NA	NA	NA	NA
1398507:1398610	attR	TACTCTACATTAGATTTTGTAAATTTTTGAAAATCGCAGTAGCAGAATGAGAAATCTCATGCTACAATTGAGGCTGAAGGTAATTATACAAAATCAAAAATTAT	NA	NA	NA	NA
WP_080571774.1|1399925_1400414_+	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944249.1|1400413_1400704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944350.1|1401660_1401981_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944901.1|1403674_1404379_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_041621523.1|1405989_1406946_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011944584.1|1406947_1407859_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_080571931.1|1407909_1409673_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_041621204.1|1409893_1411090_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011944261.1|1412722_1413121_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_011944262.1|1413208_1413787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944724.1|1413864_1414440_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_050897600.1|1414540_1415347_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_011944266.1|1420959_1421463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571887.1|1427439_1427934_-	DUF4102 domain-containing protein	NA	NA	NA	NA	NA
WP_041621300.1|1428461_1429814_-	PQQ-like beta-propeller repeat protein	NA	NA	NA	NA	NA
WP_011944906.1|1429873_1430554_-	DUF2659 family protein	NA	NA	NA	NA	NA
WP_011944848.1|1436619_1438281_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_011944350.1|1438303_1438624_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011944619.1|1439972_1440632_-	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_157866411.1|1442246_1443185_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	1625788	1687490	2127051	transposase,integrase,portal	Moraxella_phage(25.0%)	45	1617682:1617705	1689134:1689157
1617682:1617705	attL	GCTGGAAAATGGTATGACTTTAGT	NA	NA	NA	NA
WP_041621170.1|1625788_1626466_-|integrase	tyrosine-type recombinase/integrase	integrase	B6SD77	Bacteriophage	34.6	1.4e-16
WP_157866351.1|1626701_1627523_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080571804.1|1627541_1627772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866309.1|1627901_1628114_-	reverse transcriptase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011944497.1|1628199_1629372_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_011944998.1|1633155_1634943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944999.1|1635073_1636264_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	37.4	1.1e-59
WP_011945000.1|1636282_1636549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945001.1|1636969_1637209_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011945002.1|1637387_1638968_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_157866429.1|1639322_1639457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945003.1|1640705_1641392_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_041621326.1|1641870_1642935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945005.1|1643027_1643252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571853.1|1643584_1644751_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_080571893.1|1648458_1649697_-|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_157866433.1|1650292_1650676_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA	NA
WP_011945008.1|1650706_1651096_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA	NA
WP_041621328.1|1651287_1653078_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_041621533.1|1653112_1653898_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_080571934.1|1654507_1654720_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_050897557.1|1654750_1654987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945011.1|1655796_1656537_+	signal peptidase I	NA	NA	NA	NA	NA
WP_050897558.1|1656592_1657333_+	ribonuclease III	NA	A0A0P0YM82	Yellowstone_lake_phycodnavirus	34.1	1.0e-23
WP_011945013.1|1659052_1662526_-	acyl-[ACP]--phospholipid O-acyltransferase	NA	NA	NA	NA	NA
WP_041621329.1|1662844_1663477_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_011945015.1|1663473_1664112_-	endonuclease III	NA	NA	NA	NA	NA
WP_041621330.1|1664187_1664541_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_011945017.1|1664601_1665150_+	NifU family protein	NA	Q58MC7	Prochlorococcus_phage	37.8	2.7e-05
WP_011945019.1|1666413_1667214_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011945020.1|1667483_1668401_+	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
WP_173361680.1|1668462_1668924_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_011945022.1|1669001_1671098_+	NAD-dependent DNA ligase LigA	NA	A0A1W6DX16	Sphingobium_phage	36.1	1.3e-100
WP_011945023.1|1671104_1672877_+	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	35.5	8.2e-96
WP_011945024.1|1673511_1673670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866437.1|1674682_1674919_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011944637.1|1675412_1675877_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_080571893.1|1676820_1678059_+|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_011944246.1|1678184_1678520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944688.1|1678519_1679071_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_080571774.1|1679556_1680045_+	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944249.1|1680044_1680335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944350.1|1681291_1681612_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_041621523.1|1685620_1686577_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011944584.1|1686578_1687490_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
1689134:1689157	attR	ACTAAAGTCATACCATTTTCCAGC	NA	NA	NA	NA
>prophage 14
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	1729525	1771157	2127051	transposase,integrase,protease,terminase,tRNA	Bodo_saltans_virus(20.0%)	30	1751659:1751680	1766241:1766262
WP_011945047.1|1729525_1730392_-|transposase	IS630 family transposase	transposase	A0A2H4UV16	Bodo_saltans_virus	29.1	2.2e-22
WP_011945048.1|1731237_1731459_-	cold-shock protein	NA	NA	NA	NA	NA
WP_080571896.1|1732351_1732543_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_157866510.1|1732739_1732853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011945049.1|1733206_1734073_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_080571897.1|1734250_1734517_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_041621340.1|1734732_1734984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050897562.1|1735014_1736625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945050.1|1736860_1737232_+	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_041621341.1|1737291_1738329_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_011945052.1|1738457_1739399_-	protoheme IX farnesyltransferase	NA	NA	NA	NA	NA
WP_011945053.1|1739410_1740997_-	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	41.2	2.8e-10
WP_011945054.1|1741188_1742610_-|terminase	phage terminase large subunit	terminase	A0A223LHF4	Pseudoalteromonas_phage	33.7	3.9e-56
WP_011945055.1|1742935_1743559_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_011945056.1|1743558_1744119_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_011945057.1|1744128_1745229_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_041621342.1|1746365_1747160_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_162097312.1|1748655_1748859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080571898.1|1749323_1750490_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_157866445.1|1750796_1751282_-	hypothetical protein	NA	NA	NA	NA	NA
1751659:1751680	attL	TCTTATCCTAAATTAGCGTTTT	NA	NA	NA	NA
WP_011945062.1|1752134_1752683_-	cytochrome c family protein	NA	NA	NA	NA	NA
WP_011945063.1|1752931_1753882_+	paraslipin	NA	S4VT23	Pandoravirus	30.8	3.1e-09
WP_041621267.1|1755602_1756127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944639.1|1758968_1759976_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_080571829.1|1762632_1762905_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_041621182.1|1762951_1763134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011945066.1|1766602_1767616_-	P-loop NTPase	NA	NA	NA	NA	NA
1766241:1766262	attR	AAAACGCTAATTTAGGATAAGA	NA	NA	NA	NA
WP_011945067.1|1767799_1768849_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_011945068.1|1768872_1769739_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_011945069.1|1769756_1771157_+|protease	DegP-like serine protease TSA47	protease	W5SAB9	Pithovirus	32.6	5.6e-07
>prophage 15
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	1826682	1903480	2127051	transposase,tRNA,integrase	Tupanvirus(18.18%)	44	1816477:1816518	1832225:1832266
1816477:1816518	attL	AATAGACCTCTTTCGAAACTGGTTAAGGTAGTTCAAAATTAT	NA	NA	NA	NA
WP_080571797.1|1826682_1827921_+|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_011944246.1|1828046_1828382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944688.1|1828381_1828933_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_011945090.1|1828929_1829406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050897565.1|1829549_1829840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866451.1|1830558_1831275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866453.1|1831295_1832119_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_157866455.1|1832272_1832443_-	hypothetical protein	NA	NA	NA	NA	NA
1832225:1832266	attR	ATAATTTTGAACTACCTTAACCAGTTTCGAAAGAGGTCTATT	NA	NA	NA	NA
WP_011945092.1|1832432_1832768_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571936.1|1834726_1834828_-	reverse transcriptase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011945093.1|1836544_1837333_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_011945094.1|1837313_1838027_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.3	5.2e-17
WP_011945095.1|1838294_1838855_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_011945096.1|1838866_1840546_-	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	37.4	2.1e-40
WP_011945098.1|1844688_1846164_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011945099.1|1846221_1847592_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	33.8	2.4e-42
WP_011945100.1|1847827_1848577_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011945101.1|1848680_1849349_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_041621355.1|1849485_1849812_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_011945103.1|1849855_1850125_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_157866512.1|1851139_1851268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621356.1|1852613_1853438_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_050897566.1|1854366_1854693_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_011945105.1|1857452_1858001_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_011945106.1|1862941_1863517_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	29.5	9.6e-06
WP_157866457.1|1864940_1865763_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011945107.1|1868399_1869065_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	38.2	1.6e-12
WP_011945108.1|1870096_1870963_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_011945109.1|1871911_1872700_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_011945110.1|1872712_1874248_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.9	2.3e-94
WP_011945111.1|1874432_1876373_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_011945112.1|1876747_1877035_+	type IV secretion system protein VirB3	NA	NA	NA	NA	NA
WP_011945113.1|1877045_1879463_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_011945114.1|1879462_1881910_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_011945115.1|1881931_1885804_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_011945116.1|1885857_1889133_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_011945117.1|1889125_1891693_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_011945118.1|1891729_1892983_+	MFS transporter	NA	NA	NA	NA	NA
WP_011945119.1|1893011_1895054_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	36.9	4.1e-99
WP_041621553.1|1895233_1896580_+|tRNA	glutamate--tRNA ligase	tRNA	A0A2K9L594	Tupanvirus	34.8	1.3e-08
WP_011945121.1|1896644_1898081_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	31.9	7.9e-49
WP_011945122.1|1899063_1901214_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.2	5.1e-108
WP_157866459.1|1901528_1902351_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_080571899.1|1903171_1903480_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 16
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	1918702	1998075	2127051	transposase,integrase	Moraxella_phage(40.0%)	44	1952236:1952279	1976834:1976877
WP_080571893.1|1918702_1919941_+|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_011944246.1|1920066_1920402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944688.1|1920401_1920953_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_080571774.1|1921438_1921927_+	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944249.1|1921926_1922217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944350.1|1923173_1923494_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_041621254.1|1924558_1925905_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_050897539.1|1925898_1926375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621255.1|1926368_1926701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866383.1|1926712_1926865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945134.1|1931708_1932848_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011945135.1|1934610_1935654_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_080571938.1|1935638_1937402_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_011944772.1|1940384_1940840_+	conjugal transfer protein TraD	NA	NA	NA	NA	NA
WP_041621251.1|1940933_1941467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944770.1|1941503_1942079_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.4	9.6e-06
WP_157866461.1|1945276_1947091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945137.1|1947705_1948518_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S5PRR3	Streptococcus_phage	31.9	1.5e-28
WP_011945139.1|1950243_1951938_-	hypothetical protein	NA	NA	NA	NA	NA
1952236:1952279	attL	AATCAATGATATGTCCAAGATTATTAAACTTTATGTCTTGATTT	NA	NA	NA	NA
WP_157866463.1|1954026_1954849_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011945140.1|1954809_1955226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944860.1|1955678_1955879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080571797.1|1956009_1957248_+|integrase	site-specific integrase	integrase	A0A0R6PHM8	Moraxella_phage	25.1	5.1e-20
WP_011944246.1|1957373_1957709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944688.1|1957708_1958260_+	conjugative transfer protein	NA	NA	NA	NA	NA
WP_080571774.1|1958745_1959234_+	TraB/VirB10 family protein	NA	NA	NA	NA	NA
WP_011944249.1|1959233_1959524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944350.1|1960480_1960801_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_157866281.1|1965077_1965900_+|transposase	IS5-like element ISOt6 family transposase	transposase	NA	NA	NA	NA
WP_173361696.1|1967641_1968736_-	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_011944725.1|1968917_1969451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157866365.1|1969573_1969720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621227.1|1969898_1970471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011945142.1|1974503_1975013_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_011945143.1|1975307_1976102_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_041621267.1|1977056_1977581_+	hypothetical protein	NA	NA	NA	NA	NA
1976834:1976877	attR	AAATCAAGACATAAAGTTTAATAATCTTGGACATATCATTGATT	NA	NA	NA	NA
WP_011944266.1|1980584_1981088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945144.1|1982495_1983443_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_157866516.1|1983597_1984470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011944625.1|1986738_1987332_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	31.1	5.8e-06
WP_011944624.1|1987399_1987945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011944623.1|1989314_1991051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571931.1|1995349_1997113_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_011944584.1|1997163_1998075_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
>prophage 17
NC_009488	Orientia tsutsugamushi str. Boryong, complete genome	2127051	2014551	2116959	2127051	protease,transposase,tRNA,integrase	Pseudomonas_phage(20.0%)	56	2009538:2009555	2071343:2071360
2009538:2009555	attL	TAAAACTGATAGCATTAG	NA	NA	NA	NA
WP_050897574.1|2014551_2015871_-|integrase	site-specific integrase	integrase	Q9T1P3	Pseudomonas_phage	25.1	2.4e-15
WP_011945151.1|2019297_2019873_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2K9LAT2	Tupanvirus	30.4	3.9e-07
WP_011945153.1|2021023_2022367_+	DUF2748 family protein	NA	NA	NA	NA	NA
WP_011945154.1|2022979_2024089_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_080571902.1|2024671_2024845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080571903.1|2024831_2025098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050897576.1|2025232_2025538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162097313.1|2025550_2025697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173361700.1|2026056_2026974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080571859.1|2027272_2028241_-|transposase	transposase	transposase	M1NSC9	Streptococcus_phage	24.8	2.1e-05
WP_011945156.1|2029124_2029985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041621256.1|2032140_2032665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011945158.1|2036282_2037158_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011944727.1|2037633_2044533_-	hypothetical protein	NA	Q9JMP0	Wolbachia_phage	29.7	1.1e-31
WP_157866369.1|2044525_2044948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011945159.1|2045633_2046953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157866465.1|2047426_2048249_+|transposase	IS5-like element ISOt6 family transposase	transposase	NA	NA	NA	NA
WP_173361673.1|2050486_2050630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050897578.1|2050664_2051891_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_041621376.1|2053175_2054678_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_011944995.1|2058241_2059027_-	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	29.8	2.6e-17
WP_157866403.1|2060024_2060847_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_157866467.1|2063180_2063402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011945161.1|2066335_2069986_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011945162.1|2070431_2072714_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
2071343:2071360	attR	TAAAACTGATAGCATTAG	NA	NA	NA	NA
WP_157866385.1|2076165_2076988_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_157866469.1|2076948_2077449_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_011944685.1|2078987_2080937_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_157866518.1|2081572_2082511_+	reverse transcriptase	NA	NA	NA	NA	NA
WP_041621383.1|2082950_2083310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041621384.1|2083346_2083694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050897580.1|2084359_2084653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011945164.1|2085576_2086515_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_011945165.1|2086498_2087371_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_011945166.1|2087394_2087922_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	50.9	3.2e-40
WP_011945167.1|2088004_2088436_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_011945168.1|2088469_2089408_-	tyrosine recombinase XerC	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	26.3	3.3e-11
WP_011945169.1|2089433_2090777_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_011945170.1|2090857_2095783_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_157866471.1|2096715_2097539_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011945171.1|2099141_2099624_-	protein-export chaperone SecB	NA	NA	NA	NA	NA
WP_011945172.1|2099666_2100233_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	55.7	6.3e-58
WP_011945173.1|2100867_2102148_+	porin	NA	NA	NA	NA	NA
WP_011945174.1|2102311_2102875_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_011945175.1|2103154_2105194_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_041621567.1|2105301_2106321_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_041621568.1|2106352_2106832_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_011945178.1|2106835_2107444_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_011945179.1|2107427_2107751_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_011945180.1|2107754_2109662_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_041621388.1|2109662_2111159_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_011945182.1|2111203_2112640_+	NADH-quinone oxidoreductase subunit N	NA	NA	NA	NA	NA
WP_011945183.1|2112724_2114050_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	R4TVK3	Phaeocystis_globosa_virus	24.7	2.5e-09
WP_011945184.1|2114066_2115950_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	46.4	1.5e-111
WP_011945185.1|2115984_2116521_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
WP_011945186.1|2116536_2116959_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
