assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000063485.1_ASM6348v1	NC_009480	Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome	1	562943-563124	1	PILER-CR	no		csa3,DEDDh,WYL,cas3	Orphan	TCGGCATCGCCGGATCCGCCG	21	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,WYL,cas3	NA|196aa|up_9|NC_009480.1_550604_551192_-,NA|132aa|up_6|NC_009480.1_556092_556488_-,NA	NA|196aa|up_9|NC_009480.1_550604_551192_-	NA	NA|279aa|up_8|NC_009480.1_551280_552117_-	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|1149aa|up_7|NC_009480.1_552276_555723_-	sd00006, TPR, Tetratricopeptide repeat	NA|132aa|up_6|NC_009480.1_556092_556488_-	NA	NA|206aa|up_5|NC_009480.1_556484_557102_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|185aa|up_4|NC_009480.1_557230_557785_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|158aa|up_3|NC_009480.1_557917_558391_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|312aa|up_2|NC_009480.1_558503_559439_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|185aa|up_1|NC_009480.1_559505_560060_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|692aa|up_0|NC_009480.1_560059_562135_+	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|266aa|down_0|NC_009480.1_563510_564308_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|302aa|down_1|NC_009480.1_564437_565343_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|57aa|down_2|NC_009480.1_565416_565587_-	pfam05532, CsbD, CsbD-like	NA|140aa|down_3|NC_009480.1_565771_566191_+	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal	NA|725aa|down_4|NC_009480.1_566279_568454_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|336aa|down_5|NC_009480.1_568473_569481_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|426aa|down_6|NC_009480.1_569677_570955_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|300aa|down_7|NC_009480.1_571113_572013_+	pfam13828, DUF4190, Domain of unknown function (DUF4190)	NA|415aa|down_8|NC_009480.1_572090_573335_+	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]	NA|365aa|down_9|NC_009480.1_573368_574463_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_000063485.1_ASM6348v1	NC_009480	Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome	2	2246887-2247155	1,2	CRISPRCasFinder,PILER-CR	no		csa3,DEDDh,WYL,cas3	Orphan	GACCAGGGCTTGCGCTCCCCGTCACG,CGACCAGGGCTTGCGCTCCCCATCACG	26,27	0	0	NA	NA	NA:NA	4,3	4	Orphan	csa3,DEDDh,WYL,cas3	NA|70aa|up_2|NC_009480.1_2244478_2244688_-,NA|236aa|down_1|NC_009480.1_2255078_2255786_+,NA|200aa|down_2|NC_009480.1_2255782_2256382_+,NA|46aa|down_4|NC_009480.1_2257034_2257172_-	NA|295aa|up_9|NC_009480.1_2236549_2237434_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|329aa|up_8|NC_009480.1_2237503_2238490_-	PRK00283, xerD, tyrosine recombinase	NA|226aa|up_7|NC_009480.1_2238486_2239164_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|552aa|up_6|NC_009480.1_2239160_2240816_-	PRK05380, pyrG, CTP synthetase; Validated	NA|572aa|up_5|NC_009480.1_2240976_2242692_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|320aa|up_4|NC_009480.1_2242684_2243644_-	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|268aa|up_3|NC_009480.1_2243607_2244411_-	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|70aa|up_2|NC_009480.1_2244478_2244688_-	NA	NA|347aa|up_1|NC_009480.1_2244697_2245738_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|327aa|up_0|NC_009480.1_2245727_2246708_-	pfam04147, Nop14, Nop14-like family	NA|435aa|down_0|NC_009480.1_2253554_2254859_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|236aa|down_1|NC_009480.1_2255078_2255786_+	NA	NA|200aa|down_2|NC_009480.1_2255782_2256382_+	NA	NA|205aa|down_3|NC_009480.1_2256412_2257027_-	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|46aa|down_4|NC_009480.1_2257034_2257172_-	NA	NA|498aa|down_5|NC_009480.1_2257168_2258662_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|413aa|down_6|NC_009480.1_2258666_2259905_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|308aa|down_7|NC_009480.1_2259953_2260877_-	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|406aa|down_8|NC_009480.1_2261026_2262244_-	PRK03244, argD, acetylornithine transaminase	NA|304aa|down_9|NC_009480.1_2262240_2263152_-	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis
GCF_000063485.1_ASM6348v1	NC_009480	Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome	3	2337062-2337240	2	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3	Orphan	CTTCGCCGTCGACTTCTTCGCGC	23	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,WYL,cas3	NA,NA|46aa|down_2|NC_009480.1_2341630_2341768_+	NA|266aa|up_9|NC_009480.1_2327637_2328435_+	cd05233, SDR_c, classical (c) SDRs	NA|70aa|up_8|NC_009480.1_2328434_2328644_+	pfam11160, DUF2945, Protein of unknown function (DUF2945)	NA|416aa|up_7|NC_009480.1_2328723_2329971_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|221aa|up_6|NC_009480.1_2329967_2330630_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|462aa|up_5|NC_009480.1_2330667_2332053_-	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family	NA|211aa|up_4|NC_009480.1_2332161_2332794_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|93aa|up_3|NC_009480.1_2332895_2333174_-	pfam11272, DUF3072, Protein of unknown function (DUF3072)	NA|395aa|up_2|NC_009480.1_2333275_2334460_-	pfam13367, PrsW-protease, Protease prsW family	NA|476aa|up_1|NC_009480.1_2334588_2336016_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|312aa|up_0|NC_009480.1_2336074_2337010_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|840aa|down_0|NC_009480.1_2338099_2340619_+	PRK09632, PRK09632, ATP-dependent DNA ligase; Reviewed	NA|293aa|down_1|NC_009480.1_2340709_2341588_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|46aa|down_2|NC_009480.1_2341630_2341768_+	NA	NA|303aa|down_3|NC_009480.1_2341811_2342720_+	pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain	NA|506aa|down_4|NC_009480.1_2342797_2344315_-	PRK12273, aspA, aspartate ammonia-lyase; Provisional	NA|284aa|down_5|NC_009480.1_2344421_2345273_+	COG4328, COG4328, Predicted nuclease (RNAse H fold) [General function prediction only]	NA|249aa|down_6|NC_009480.1_2345294_2346041_-	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|174aa|down_7|NC_009480.1_2346230_2346752_+	pfam04138, GtrA, GtrA-like protein	NA|426aa|down_8|NC_009480.1_2346771_2348049_-	pfam01566, Nramp, Natural resistance-associated macrophage protein	NA|492aa|down_9|NC_009480.1_2348146_2349622_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]
GCF_000063485.1_ASM6348v1	NC_009480	Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome	4	2424096-2424171	3	CRISPRCasFinder	no		csa3,DEDDh,WYL,cas3	Orphan	GTGCTGGTGCCCCGCGGGTTGCGGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,WYL,cas3	NA|154aa|up_6|NC_009480.1_2419060_2419522_-,NA|123aa|up_5|NC_009480.1_2419559_2419928_-,NA	NA|422aa|up_9|NC_009480.1_2416142_2417408_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|229aa|up_8|NC_009480.1_2417442_2418129_+	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|311aa|up_7|NC_009480.1_2418125_2419058_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|154aa|up_6|NC_009480.1_2419060_2419522_-	NA	NA|123aa|up_5|NC_009480.1_2419559_2419928_-	NA	NA|320aa|up_4|NC_009480.1_2419924_2420884_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|332aa|up_3|NC_009480.1_2420970_2421966_+	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|189aa|up_2|NC_009480.1_2422015_2422582_-	PRK06696, PRK06696, uridine kinase; Validated	NA|293aa|up_1|NC_009480.1_2422620_2423499_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|167aa|up_0|NC_009480.1_2423543_2424044_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|945aa|down_0|NC_009480.1_2424223_2427058_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|98aa|down_1|NC_009480.1_2427154_2427448_-	pfam04296, DUF448, Protein of unknown function (DUF448)	NA|336aa|down_2|NC_009480.1_2427498_2428506_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|591aa|down_3|NC_009480.1_2428592_2430365_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|334aa|down_4|NC_009480.1_2430396_2431398_-	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs	NA|878aa|down_5|NC_009480.1_2431394_2434028_-	PRK09274, PRK09274, peptide synthase; Provisional	NA|344aa|down_6|NC_009480.1_2434074_2435106_-	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|382aa|down_7|NC_009480.1_2435213_2436359_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|481aa|down_8|NC_009480.1_2436449_2437892_-	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|417aa|down_9|NC_009480.1_2438003_2439254_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
