The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_009480	Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome	3297891	957981	967916	3297891	tRNA,protease	Pandoravirus(25.0%)	9	NA	NA
WP_012037523.1|957981_958515_+	O-acetyl-ADP-ribose deacetylase	NA	F1SVT2	Red_sea_bream_iridovirus	49.7	1.4e-27
WP_012037524.1|959320_960616_+	peptidoglycan DD-metalloendopeptidase family protein	NA	G9BW84	Planktothrix_phage	46.1	1.0e-15
WP_043560615.1|960617_962003_+	C40 family peptidase	NA	A0A0A8WIF2	Clostridium_phage	40.0	4.5e-09
WP_012037526.1|962139_962667_-	inorganic diphosphatase	NA	A0A1B1ISK6	uncultured_Mediterranean_phage	44.4	3.3e-29
WP_012037527.1|962721_963747_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_012037528.1|963748_964300_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	30.8	1.2e-08
WP_012037529.1|964457_966458_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQ50	Micromonas_sp._RCC1109_virus	45.6	1.3e-105
WP_012037530.1|966462_967047_+	GTP cyclohydrolase I	NA	A0A0B5J000	Pandoravirus	40.1	8.5e-26
WP_050976350.1|967073_967916_+	dihydropteroate synthase	NA	S4VNV0	Pandoravirus	35.4	1.8e-24
>prophage 2
NC_009480	Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete genome	3297891	1152322	1159219	3297891		Escherichia_phage(33.33%)	8	NA	NA
WP_043560658.1|1152322_1153462_-	glycosyltransferase family 4 protein	NA	J7Q7I8	Aeropyrum_coil-shaped_virus	28.6	2.5e-05
WP_012037693.1|1153553_1154300_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	4.0e-12
WP_012037694.1|1154283_1155153_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012037695.1|1155247_1156102_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.3	3.5e-28
WP_012037696.1|1156098_1157088_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	42.2	6.4e-74
WP_012037697.1|1157268_1157721_+	GtrA family protein	NA	NA	NA	NA	NA
WP_012037698.1|1157746_1158352_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	NA	A0A1D7XFA9	Escherichia_phage	35.4	3.7e-24
WP_012037699.1|1158355_1159219_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	59.4	5.7e-95
>prophage 1
NC_009479	Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2, complete sequence	69989	0	7753	69989		Clavibacter_phage(100.0%)	8	NA	NA
WP_148267481.1|1700_2009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011931155.1|2420_3329_+	DUF1738 domain-containing protein	NA	NA	NA	NA	NA
WP_158309416.1|3804_3966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931157.1|4361_4739_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_011931158.1|4741_5263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931159.1|5259_6033_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_011931160.1|6095_7049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011931161.1|7264_7753_+	hypothetical protein	NA	U5PTU3	Clavibacter_phage	45.6	1.9e-07
>prophage 2
NC_009479	Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2, complete sequence	69989	16649	17699	69989		Streptomyces_phage(100.0%)	1	NA	NA
WP_011931168.1|16649_17699_-	C40 family peptidase	NA	A0A2L1IVP0	Streptomyces_phage	49.2	5.4e-23
>prophage 3
NC_009479	Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2, complete sequence	69989	39112	40263	69989		Mycobacterium_phage(50.0%)	2	NA	NA
WP_011931186.1|39112_39457_-	Lsr2 family protein	NA	A0A0M4R239	Mycobacterium_phage	33.9	3.8e-10
WP_011931187.1|39576_40263_-	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	38.9	8.7e-30
>prophage 4
NC_009479	Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2, complete sequence	69989	64865	65033	69989		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_011931209.1|64865_65033_+	hypothetical protein	NA	A0A2H4J2N9	uncultured_Caudovirales_phage	63.6	2.7e-09
