assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	1	449963-450088	1	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	TCCGGAGGCCTCGGGCGTCCGATTTATCCCTCCGGATAGCCGG	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|315aa|up_9|NC_008278.1_435403_436348_-,NA|623aa|up_7|NC_008278.1_437342_439211_-,NA|217aa|up_4|NC_008278.1_441288_441939_-,NA	NA|315aa|up_9|NC_008278.1_435403_436348_-	NA	NA|306aa|up_8|NC_008278.1_436428_437346_-	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|623aa|up_7|NC_008278.1_437342_439211_-	NA	NA|259aa|up_6|NC_008278.1_439254_440031_-	pfam01234, NNMT_PNMT_TEMT, NNMT/PNMT/TEMT family	NA|188aa|up_5|NC_008278.1_440293_440857_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|217aa|up_4|NC_008278.1_441288_441939_-	NA	NA|236aa|up_3|NC_008278.1_442117_442825_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|533aa|up_2|NC_008278.1_443160_444759_+	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain	NA|243aa|up_1|NC_008278.1_444805_445534_+	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism]	NA|469aa|up_0|NC_008278.1_448514_449921_+	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|628aa|down_0|NC_008278.1_450123_452007_-	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	NA|401aa|down_1|NC_008278.1_452190_453393_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|264aa|down_2|NC_008278.1_453611_454403_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|387aa|down_3|NC_008278.1_454420_455581_-	PLN02721, PLN02721, threonine aldolase	NA|380aa|down_4|NC_008278.1_455611_456751_-	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family	NA|179aa|down_5|NC_008278.1_456971_457508_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|324aa|down_6|NC_008278.1_457522_458494_-	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family	NA|204aa|down_7|NC_008278.1_458642_459254_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|524aa|down_8|NC_008278.1_459484_461056_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|430aa|down_9|NC_008278.1_460969_462259_-	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	2	513103-518802	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Type I-E	GTCGTCCCCGCCCGCGCGGGGATCTTCC,GTCGTCCCCGCCCGCGCGGGGATCTTCC,GTCGTCCCCGCCCGCGCGGGGATCTTCC	28,28,28	1	1	513741-513773	NC_008278.1_5284611-5284579	NA:NA:NA	92,93,93	93	TypeI-E	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|73aa|up_8|NC_008278.1_503230_503449_-,NA|51aa|up_5|NC_008278.1_505247_505400_+,NA|185aa|up_3|NC_008278.1_506171_506726_+,NA|99aa|down_9|NC_008278.1_532268_532565_+	NA|246aa|up_9|NC_008278.1_502339_503077_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|73aa|up_8|NC_008278.1_503230_503449_-	NA	NA|277aa|up_7|NC_008278.1_503618_504449_-	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|233aa|up_6|NC_008278.1_504552_505251_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|51aa|up_5|NC_008278.1_505247_505400_+	NA	NA|112aa|up_4|NC_008278.1_505472_505808_+	PLN02706, PLN02706, glucosamine 6-phosphate N-acetyltransferase	NA|185aa|up_3|NC_008278.1_506171_506726_+	NA	NA|690aa|up_2|NC_008278.1_507194_509264_+	cd02762, MopB_1, The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	NA|293aa|up_1|NC_008278.1_509637_510516_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|170aa|up_0|NC_008278.1_511835_512345_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	cas3|944aa|down_0|NC_008278.1_519033_521865_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|547aa|down_1|NC_008278.1_522557_524198_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|201aa|down_2|NC_008278.1_524227_524830_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|381aa|down_3|NC_008278.1_524899_526042_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|276aa|down_4|NC_008278.1_526038_526866_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|253aa|down_5|NC_008278.1_526873_527632_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|331aa|down_6|NC_008278.1_527633_528626_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|93aa|down_7|NC_008278.1_528625_528904_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|509aa|down_8|NC_008278.1_530570_532097_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|99aa|down_9|NC_008278.1_532268_532565_+	NA
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	3	528923-530475	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Type I-E	GTCGTCCCCGCCCGCGCGGGGATCGTCC,GTCGTCCCCGCCCGCGCGGGGATCGTCC,NNNNNNNNNNNGTCGTCCCCGCCCGCGCGGGGATCGTCC	28,28,39	0	0	NA	NA	NA:NA:NA	25,25,25	25	TypeI-E	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA,NA|99aa|down_1|NC_008278.1_532268_532565_+,NA|158aa|down_3|NC_008278.1_533078_533552_+,NA|82aa|down_5|NC_008278.1_536570_536816_-,NA|153aa|down_6|NC_008278.1_536740_537199_-,NA|139aa|down_7|NC_008278.1_537455_537872_+	NA|293aa|up_9|NC_008278.1_509637_510516_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|170aa|up_8|NC_008278.1_511835_512345_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	cas3|944aa|up_7|NC_008278.1_519033_521865_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|547aa|up_6|NC_008278.1_522557_524198_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|201aa|up_5|NC_008278.1_524227_524830_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|381aa|up_4|NC_008278.1_524899_526042_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|276aa|up_3|NC_008278.1_526038_526866_+	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas6e|253aa|up_2|NC_008278.1_526873_527632_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|331aa|up_1|NC_008278.1_527633_528626_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|93aa|up_0|NC_008278.1_528625_528904_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|509aa|down_0|NC_008278.1_530570_532097_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_008278.1_532268_532565_+	NA	NA|178aa|down_2|NC_008278.1_532548_533082_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|158aa|down_3|NC_008278.1_533078_533552_+	NA	NA|834aa|down_4|NC_008278.1_533825_536327_+	pfam13676, TIR_2, TIR domain	NA|82aa|down_5|NC_008278.1_536570_536816_-	NA	NA|153aa|down_6|NC_008278.1_536740_537199_-	NA	NA|139aa|down_7|NC_008278.1_537455_537872_+	NA	NA|1213aa|down_8|NC_008278.1_537877_541516_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|184aa|down_9|NC_008278.1_543270_543822_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	4	640527-640712	4	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	GCCGATGCGGCCGGACTCGCCGA	23	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|50aa|up_6|NC_008278.1_629675_629825_-,NA|745aa|up_3|NC_008278.1_632441_634676_-,NA|206aa|down_2|NC_008278.1_642039_642657_-	NA|205aa|up_9|NC_008278.1_627503_628118_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|155aa|up_8|NC_008278.1_628241_628706_+	pfam07883, Cupin_2, Cupin domain	NA|275aa|up_7|NC_008278.1_628835_629660_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|50aa|up_6|NC_008278.1_629675_629825_-	NA	NA|475aa|up_5|NC_008278.1_629811_631236_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|226aa|up_4|NC_008278.1_631206_631884_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|745aa|up_3|NC_008278.1_632441_634676_-	NA	NA|110aa|up_2|NC_008278.1_634672_635002_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|648aa|up_1|NC_008278.1_635151_637095_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|278aa|up_0|NC_008278.1_637519_638353_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|149aa|down_0|NC_008278.1_640775_641222_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|147aa|down_1|NC_008278.1_641379_641820_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|206aa|down_2|NC_008278.1_642039_642657_-	NA	NA|268aa|down_3|NC_008278.1_643036_643840_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|308aa|down_4|NC_008278.1_643812_644736_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|346aa|down_5|NC_008278.1_644898_645936_-	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|309aa|down_6|NC_008278.1_646190_647117_-	PRK09553, tauD, taurine dioxygenase; Reviewed	NA|409aa|down_7|NC_008278.1_647506_648733_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|929aa|down_8|NC_008278.1_649601_652388_-	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase	NA|429aa|down_9|NC_008278.1_652722_654009_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	5	641085-641167	5	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	GCCGATGCGGCCGGACTCGCCGA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|50aa|up_6|NC_008278.1_629675_629825_-,NA|745aa|up_3|NC_008278.1_632441_634676_-,NA|206aa|down_1|NC_008278.1_642039_642657_-	NA|205aa|up_9|NC_008278.1_627503_628118_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|155aa|up_8|NC_008278.1_628241_628706_+	pfam07883, Cupin_2, Cupin domain	NA|275aa|up_7|NC_008278.1_628835_629660_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|50aa|up_6|NC_008278.1_629675_629825_-	NA	NA|475aa|up_5|NC_008278.1_629811_631236_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|226aa|up_4|NC_008278.1_631206_631884_-	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only]	NA|745aa|up_3|NC_008278.1_632441_634676_-	NA	NA|110aa|up_2|NC_008278.1_634672_635002_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|648aa|up_1|NC_008278.1_635151_637095_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|278aa|up_0|NC_008278.1_637519_638353_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|147aa|down_0|NC_008278.1_641379_641820_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|206aa|down_1|NC_008278.1_642039_642657_-	NA	NA|268aa|down_2|NC_008278.1_643036_643840_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|308aa|down_3|NC_008278.1_643812_644736_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|346aa|down_4|NC_008278.1_644898_645936_-	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold	NA|309aa|down_5|NC_008278.1_646190_647117_-	PRK09553, tauD, taurine dioxygenase; Reviewed	NA|409aa|down_6|NC_008278.1_647506_648733_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|929aa|down_7|NC_008278.1_649601_652388_-	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase	NA|429aa|down_8|NC_008278.1_652722_654009_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|162aa|down_9|NC_008278.1_654022_654508_-	pfam03965, Penicillinase_R, Penicillinase repressor
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	6	1379143-1379273	6	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	CCCGCGTCACCCGCCGGCCCCGC	23	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA,NA	NA|134aa|up_9|NC_008278.1_1366934_1367336_+	pfam12005, DUF3499, Protein of unknown function (DUF3499)	NA|453aa|up_8|NC_008278.1_1367619_1368978_+	PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed	NA|68aa|up_7|NC_008278.1_1368977_1369181_+	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|388aa|up_6|NC_008278.1_1369197_1370361_+	pfam10432, bact-PGI_C, Bacterial phospho-glucose isomerase C-terminal SIS domain	NA|284aa|up_5|NC_008278.1_1370602_1371454_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|136aa|up_4|NC_008278.1_1371997_1372405_+	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|370aa|up_3|NC_008278.1_1372392_1373502_+	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|604aa|up_2|NC_008278.1_1373556_1375368_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|378aa|up_1|NC_008278.1_1375364_1376498_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|779aa|up_0|NC_008278.1_1376573_1378910_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|157aa|down_0|NC_008278.1_1379833_1380304_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|421aa|down_1|NC_008278.1_1380624_1381887_+	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional	NA|355aa|down_2|NC_008278.1_1381940_1383005_-	COG1714, COG1714, Predicted membrane protein/domain [Function unknown]	NA|232aa|down_3|NC_008278.1_1383777_1384473_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|444aa|down_4|NC_008278.1_1384669_1386001_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|2276aa|down_5|NC_008278.1_1386218_1393046_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|337aa|down_6|NC_008278.1_1393162_1394173_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|160aa|down_7|NC_008278.1_1394182_1394662_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|306aa|down_8|NC_008278.1_1394662_1395580_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|127aa|down_9|NC_008278.1_1395648_1396029_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	7	1451930-1452011	7	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	CTGGCAACGCGGCCAACGCGGGCGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|84aa|up_3|NC_008278.1_1447954_1448206_+,NA|156aa|down_4|NC_008278.1_1456996_1457464_+,NA|373aa|down_5|NC_008278.1_1457405_1458524_-	NA|75aa|up_9|NC_008278.1_1433965_1434190_+	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]	NA|1161aa|up_8|NC_008278.1_1434307_1437790_-	pfam01636, APH, Phosphotransferase enzyme family	NA|409aa|up_7|NC_008278.1_1438166_1439393_+	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]	NA|331aa|up_6|NC_008278.1_1440443_1441436_+	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1	NA|723aa|up_5|NC_008278.1_1441451_1443620_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|1322aa|up_4|NC_008278.1_1443767_1447733_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|84aa|up_3|NC_008278.1_1447954_1448206_+	NA	NA|221aa|up_2|NC_008278.1_1448221_1448884_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|525aa|up_1|NC_008278.1_1448885_1450460_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|312aa|up_0|NC_008278.1_1450456_1451392_+	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|242aa|down_0|NC_008278.1_1452197_1452923_-	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|338aa|down_1|NC_008278.1_1452999_1454013_-	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|233aa|down_2|NC_008278.1_1454327_1455026_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|516aa|down_3|NC_008278.1_1455261_1456809_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|156aa|down_4|NC_008278.1_1456996_1457464_+	NA	NA|373aa|down_5|NC_008278.1_1457405_1458524_-	NA	NA|367aa|down_6|NC_008278.1_1459304_1460405_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|279aa|down_7|NC_008278.1_1460974_1461811_+	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|373aa|down_8|NC_008278.1_1462014_1463133_-	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated	NA|887aa|down_9|NC_008278.1_1463515_1466176_+	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	8	1606043-1606176	8	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	GCCTTCGGCGATCTGTGGGGACCCCTCGCCCAGGGCGCCGT	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|65aa|up_8|NC_008278.1_1598785_1598980_-,NA|61aa|up_4|NC_008278.1_1602320_1602503_+,NA|143aa|down_4|NC_008278.1_1610604_1611033_-,NA|346aa|down_7|NC_008278.1_1613064_1614102_+	NA|499aa|up_9|NC_008278.1_1597119_1598616_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|65aa|up_8|NC_008278.1_1598785_1598980_-	NA	NA|507aa|up_7|NC_008278.1_1599289_1600810_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|219aa|up_6|NC_008278.1_1601000_1601657_+	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|97aa|up_5|NC_008278.1_1601798_1602089_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|61aa|up_4|NC_008278.1_1602320_1602503_+	NA	NA|180aa|up_3|NC_008278.1_1603355_1603895_+	pfam09438, DUF2017, Domain of unknown function (DUF2017)	NA|135aa|up_2|NC_008278.1_1604003_1604408_+	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)	NA|107aa|up_1|NC_008278.1_1604741_1605062_+	cd17074, Ubl_CysO_like, ubiquitin-like (Ubl) domain found in Mycobacterium tuberculosis CysO and similar proteins	NA|316aa|up_0|NC_008278.1_1605083_1606031_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|203aa|down_0|NC_008278.1_1606184_1606793_-	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|248aa|down_1|NC_008278.1_1606804_1607548_-	PRK00173, rph, ribonuclease PH; Reviewed	NA|249aa|down_2|NC_008278.1_1607603_1608350_-	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|307aa|down_3|NC_008278.1_1608346_1609267_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|143aa|down_4|NC_008278.1_1610604_1611033_-	NA	NA|291aa|down_5|NC_008278.1_1611373_1612246_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|107aa|down_6|NC_008278.1_1612347_1612668_-	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|346aa|down_7|NC_008278.1_1613064_1614102_+	NA	NA|170aa|down_8|NC_008278.1_1614151_1614661_-	cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|146aa|down_9|NC_008278.1_1614902_1615340_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	9	1725539-1726958	3,9,3	PILER-CR,CRISPRCasFinder,CRT	no	csa3	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Type I-A	GTCGCTGATCATCCCTGGAGGGATCGCAAC,GTCGCTGATCATCCCTGGAGGGATCGCAAC,GTCGCTGATCATCCCTGGAGGGATCGCAAC	30,30,30	0	0	NA	NA	?:?:?	20,21,21	21	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|171aa|up_2|NC_008278.1_1719994_1720507_+,NA|191aa|down_2|NC_008278.1_1728242_1728815_-,NA|159aa|down_4|NC_008278.1_1731612_1732089_-,NA|126aa|down_5|NC_008278.1_1732081_1732459_-	NA|345aa|up_9|NC_008278.1_1706095_1707130_-	PRK07877, PRK07877, Rv1355c family protein	NA|221aa|up_8|NC_008278.1_1707377_1708040_+	cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases	NA|905aa|up_7|NC_008278.1_1708580_1711295_+	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|155aa|up_6|NC_008278.1_1711352_1711817_-	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|1012aa|up_5|NC_008278.1_1712026_1715062_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|483aa|up_4|NC_008278.1_1715581_1717030_+	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|927aa|up_3|NC_008278.1_1717094_1719875_+	cd02851, E_set_GO_C, C-terminal Early set domain associated with the catalytic domain of galactose oxidase	NA|171aa|up_2|NC_008278.1_1719994_1720507_+	NA	NA|245aa|up_1|NC_008278.1_1720565_1721300_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|684aa|up_0|NC_008278.1_1721391_1723443_+	pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2	NA|210aa|down_0|NC_008278.1_1726988_1727618_-	pfam00498, FHA, FHA domain	NA|177aa|down_1|NC_008278.1_1727675_1728206_-	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|191aa|down_2|NC_008278.1_1728242_1728815_-	NA	NA|870aa|down_3|NC_008278.1_1728945_1731555_-	TIGR02412, Aminopeptidase_N, aminopeptidase N, Streptomyces lividans type	NA|159aa|down_4|NC_008278.1_1731612_1732089_-	NA	NA|126aa|down_5|NC_008278.1_1732081_1732459_-	NA	csa3|251aa|down_6|NC_008278.1_1733041_1733794_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|316aa|down_7|NC_008278.1_1733852_1734800_+	TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase, MSMEG_4879 family	NA|147aa|down_8|NC_008278.1_1735901_1736342_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|356aa|down_9|NC_008278.1_1736408_1737476_+	pfam06224, HTH_42, Winged helix DNA-binding domain
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	10	1741773-1741929	10	CRISPRCasFinder	no	csa3	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Type I-A	GGTTCGTGATCATCCCTGGAGGGATCGCAAC	31	0	0	NA	NA	?	2	2	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|159aa|up_9|NC_008278.1_1731612_1732089_-,NA|126aa|up_8|NC_008278.1_1732081_1732459_-,NA	NA|159aa|up_9|NC_008278.1_1731612_1732089_-	NA	NA|126aa|up_8|NC_008278.1_1732081_1732459_-	NA	csa3|251aa|up_7|NC_008278.1_1733041_1733794_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|316aa|up_6|NC_008278.1_1733852_1734800_+	TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase, MSMEG_4879 family	NA|147aa|up_5|NC_008278.1_1735901_1736342_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|356aa|up_4|NC_008278.1_1736408_1737476_+	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|102aa|up_3|NC_008278.1_1737505_1737811_-	pfam13453, zf-TFIIB, Transcription factor zinc-finger	NA|283aa|up_2|NC_008278.1_1739220_1740069_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|173aa|up_1|NC_008278.1_1740420_1740939_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|130aa|up_0|NC_008278.1_1741162_1741552_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|139aa|down_0|NC_008278.1_1742122_1742539_-	cd14505, CDKN3-like, cyclin-dependent kinase inhibitor 3 and similar proteins	NA|157aa|down_1|NC_008278.1_1743046_1743517_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|493aa|down_2|NC_008278.1_1743705_1745184_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|205aa|down_3|NC_008278.1_1745448_1746063_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|386aa|down_4|NC_008278.1_1746161_1747319_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|348aa|down_5|NC_008278.1_1747223_1748267_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|380aa|down_6|NC_008278.1_1748345_1749485_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|245aa|down_7|NC_008278.1_1749516_1750251_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|234aa|down_8|NC_008278.1_1750494_1751196_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|230aa|down_9|NC_008278.1_1751207_1751897_+	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	11	3270339-3270415	11	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	CCGCCTCGTCTTCCGGGCCCGCTCG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|243aa|up_8|NC_008278.1_3252956_3253685_-,NA|304aa|up_7|NC_008278.1_3253957_3254869_+,NA|338aa|up_4|NC_008278.1_3257625_3258639_+,NA	NA|293aa|up_9|NC_008278.1_3252002_3252881_+	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|243aa|up_8|NC_008278.1_3252956_3253685_-	NA	NA|304aa|up_7|NC_008278.1_3253957_3254869_+	NA	NA|224aa|up_6|NC_008278.1_3254938_3255610_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|609aa|up_5|NC_008278.1_3255600_3257427_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|338aa|up_4|NC_008278.1_3257625_3258639_+	NA	NA|2296aa|up_3|NC_008278.1_3258873_3265761_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|444aa|up_2|NC_008278.1_3265936_3267268_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|233aa|up_1|NC_008278.1_3267391_3268090_-	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|603aa|up_0|NC_008278.1_3268094_3269903_-	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|408aa|down_0|NC_008278.1_3271040_3272264_+	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|68aa|down_1|NC_008278.1_3272275_3272479_-	pfam06902, Fer4_19, Divergent 4Fe-4S mono-cluster	NA|401aa|down_2|NC_008278.1_3272562_3273765_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|575aa|down_3|NC_008278.1_3274046_3275771_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|298aa|down_4|NC_008278.1_3275829_3276723_-	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional	NA|268aa|down_5|NC_008278.1_3276921_3277725_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|272aa|down_6|NC_008278.1_3278621_3279437_+	TIGR00189, Peroxisomal_acyl-coenzyme_A_thioester_hydrolase_1, acyl-CoA thioesterase II	NA|292aa|down_7|NC_008278.1_3279433_3280309_-	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|408aa|down_8|NC_008278.1_3280393_3281617_-	TIGR04103, heme_biosynthesis_protein, nif11-class peptide radical SAM maturase 3	NA|117aa|down_9|NC_008278.1_3281694_3282045_-	PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	12	4963215-4963309	12	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	GCGCTGACCCCGTTCGAGACCGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|240aa|up_6|NC_008278.1_4954841_4955561_+,NA|47aa|down_0|NC_008278.1_4963406_4963547_+	NA|416aa|up_9|NC_008278.1_4951023_4952271_-	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|471aa|up_8|NC_008278.1_4952270_4953683_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|300aa|up_7|NC_008278.1_4953679_4954579_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|240aa|up_6|NC_008278.1_4954841_4955561_+	NA	NA|521aa|up_5|NC_008278.1_4955644_4957207_+	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|180aa|up_4|NC_008278.1_4957485_4958025_+	cd16837, BldD_C_like, C-terminal domain of BldD and similar transcription factors	NA|368aa|up_3|NC_008278.1_4958105_4959209_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|257aa|up_2|NC_008278.1_4959295_4960066_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|144aa|up_1|NC_008278.1_4961598_4962030_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|290aa|up_0|NC_008278.1_4962067_4962937_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|47aa|down_0|NC_008278.1_4963406_4963547_+	NA	NA|372aa|down_1|NC_008278.1_4964348_4965464_+	PRK03343, PRK03343, transaldolase; Validated	NA|511aa|down_2|NC_008278.1_4965617_4967150_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|402aa|down_3|NC_008278.1_4967262_4968468_+	pfam10128, OpcA_G6PD_assem, Glucose-6-phosphate dehydrogenase subunit	NA|267aa|down_4|NC_008278.1_4968464_4969265_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|130aa|down_5|NC_008278.1_4969476_4969866_-	pfam09851, SHOCT, Short C-terminal domain	NA|524aa|down_6|NC_008278.1_4970019_4971591_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|112aa|down_7|NC_008278.1_4971749_4972085_-	pfam13397, RbpA, RNA polymerase-binding protein	NA|606aa|down_8|NC_008278.1_4972330_4974148_-	cd08506, PBP2_clavulanate_OppA2, The substrate-binding domain of an oligopeptide binding protein (OppA2) from the biosynthesis pathway of the beta-lactamase inhibitor clavulanic acid contains the type 2 periplasmic binding fold	NA|77aa|down_9|NC_008278.1_4974144_4974375_-	PRK06870, secG, preprotein translocase subunit SecG; Reviewed
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	13	5377754-5377827	13	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	GCTCGTCGTCGGCGTAGGCGGGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA,NA|283aa|down_0|NC_008278.1_5380086_5380935_-	NA|871aa|up_9|NC_008278.1_5361453_5364066_-	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|340aa|up_8|NC_008278.1_5364269_5365289_-	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|750aa|up_7|NC_008278.1_5365330_5367580_-	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|636aa|up_6|NC_008278.1_5367579_5369487_-	cd03677, MM_CoA_mutase_beta, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Beta subunit-like subfamily; contains bacterial proteins similar to the beta subunit of MCMs from Propionbacterium shermanni and Streptomyces cinnamonensis, which are alpha/beta heterodimers	NA|366aa|up_5|NC_008278.1_5369579_5370677_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|420aa|up_4|NC_008278.1_5370905_5372165_-	pfam03583, LIP, Secretory lipase	NA|242aa|up_3|NC_008278.1_5372306_5373032_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|402aa|up_2|NC_008278.1_5372986_5374192_-	pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6	NA|421aa|up_1|NC_008278.1_5374551_5375814_-	pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6	NA|535aa|up_0|NC_008278.1_5375865_5377470_-	cd02851, E_set_GO_C, C-terminal Early set domain associated with the catalytic domain of galactose oxidase	NA|283aa|down_0|NC_008278.1_5380086_5380935_-	NA	NA|297aa|down_1|NC_008278.1_5381383_5382274_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|152aa|down_2|NC_008278.1_5382492_5382948_-	pfam05099, TerB, Tellurite resistance protein TerB	NA|717aa|down_3|NC_008278.1_5383126_5385277_-	cd08588, PI-PLCc_At5g67130_like, Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs	NA|199aa|down_4|NC_008278.1_5385476_5386073_-	PRK00279, adk, adenylate kinase; Reviewed	NA|481aa|down_5|NC_008278.1_5386276_5387719_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1532aa|down_6|NC_008278.1_5387808_5392404_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|378aa|down_7|NC_008278.1_5392670_5393804_-	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	NA|276aa|down_8|NC_008278.1_5393864_5394692_-	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|409aa|down_9|NC_008278.1_5394740_5395967_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	14	6027439-6027600	4	PILER-CR	no	cas6,cas8b2,cas7,cas3,cas4,cas1,cas2	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Unclear	GGTCGCTGATCATCCCTGGAGGGATCGCAAC	31	0	0	NA	NA	?	2	2	Unclear	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|50aa|up_5|NC_008278.1_6018742_6018892_+,NA|157aa|up_0|NC_008278.1_6026262_6026733_-,cas8b2|486aa|down_1|NC_008278.1_6028880_6030338_+	NA|158aa|up_9|NC_008278.1_6011682_6012156_+	pfam13676, TIR_2, TIR domain	NA|1579aa|up_8|NC_008278.1_6012155_6016892_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|191aa|up_7|NC_008278.1_6016934_6017507_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|290aa|up_6|NC_008278.1_6017675_6018545_+	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease	NA|50aa|up_5|NC_008278.1_6018742_6018892_+	NA	NA|204aa|up_4|NC_008278.1_6019000_6019612_-	pfam13671, AAA_33, AAA domain	NA|562aa|up_3|NC_008278.1_6020008_6021694_+	pfam02129, Peptidase_S15, X-Pro dipeptidyl-peptidase (S15 family)	NA|310aa|up_2|NC_008278.1_6021915_6022845_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|834aa|up_1|NC_008278.1_6023016_6025518_+	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|157aa|up_0|NC_008278.1_6026262_6026733_-	NA	cas6|230aa|down_0|NC_008278.1_6028189_6028879_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|486aa|down_1|NC_008278.1_6028880_6030338_+	NA	cas7|354aa|down_2|NC_008278.1_6030346_6031408_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas3|1114aa|down_3|NC_008278.1_6031418_6034760_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|172aa|down_4|NC_008278.1_6034756_6035272_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|down_5|NC_008278.1_6035273_6036254_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|88aa|down_6|NC_008278.1_6036258_6036522_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|251aa|down_7|NC_008278.1_6037561_6038314_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|170aa|down_8|NC_008278.1_6039214_6039724_-	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|108aa|down_9|NC_008278.1_6040050_6040374_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	15	6036633-6037250	5,14,4	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas3,cas4,cas1,cas2	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Unclear	GTCGCTGATCATCCCTGGAGGGATCGCAAC,GTCGCTGATCATCCCTGGAGGGATCGCAAC,GTCGCTGATCATCCCTGGAGGGATCGCAAC	30,30,30	0	0	NA	NA	?:?:?	9,9,9	9	Unclear	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|157aa|up_7|NC_008278.1_6026262_6026733_-,cas8b2|486aa|up_5|NC_008278.1_6028880_6030338_+,NA	NA|310aa|up_9|NC_008278.1_6021915_6022845_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|834aa|up_8|NC_008278.1_6023016_6025518_+	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|157aa|up_7|NC_008278.1_6026262_6026733_-	NA	cas6|230aa|up_6|NC_008278.1_6028189_6028879_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|486aa|up_5|NC_008278.1_6028880_6030338_+	NA	cas7|354aa|up_4|NC_008278.1_6030346_6031408_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas3|1114aa|up_3|NC_008278.1_6031418_6034760_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|172aa|up_2|NC_008278.1_6034756_6035272_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|up_1|NC_008278.1_6035273_6036254_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|88aa|up_0|NC_008278.1_6036258_6036522_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|251aa|down_0|NC_008278.1_6037561_6038314_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|170aa|down_1|NC_008278.1_6039214_6039724_-	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|108aa|down_2|NC_008278.1_6040050_6040374_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|143aa|down_3|NC_008278.1_6040993_6041422_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|302aa|down_4|NC_008278.1_6042097_6043003_-	cd08460, PBP2_DntR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold	NA|291aa|down_5|NC_008278.1_6043238_6044111_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|223aa|down_6|NC_008278.1_6044194_6044863_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|234aa|down_7|NC_008278.1_6044870_6045572_-	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|286aa|down_8|NC_008278.1_6045710_6046568_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|297aa|down_9|NC_008278.1_6046600_6047491_-	COG2321, COG2321, Predicted metalloprotease [General function prediction only]
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	16	6604374-6604725	5,6,15	CRT,PILER-CR,CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	ATCCCTCTAGGGATGATCAGCGAC,GTCGCTGATCATCCCTAGAGGGATCGCAAC,GTTGCTATCCCTCTAGGGATGATCAGCGAC	24,30,30	0	0	NA	NA	NA:?:?	5,4,4	5	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|215aa|up_5|NC_008278.1_6597052_6597697_-,NA|123aa|down_5|NC_008278.1_6613514_6613883_+	NA|169aa|up_9|NC_008278.1_6591636_6592143_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|563aa|up_8|NC_008278.1_6592252_6593941_+	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]	NA|581aa|up_7|NC_008278.1_6594185_6595928_+	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I	NA|310aa|up_6|NC_008278.1_6596060_6596990_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|215aa|up_5|NC_008278.1_6597052_6597697_-	NA	NA|459aa|up_4|NC_008278.1_6597839_6599216_-	PRK06058, PRK06058, 4-aminobutyrate--2-oxoglutarate transaminase	NA|481aa|up_3|NC_008278.1_6599421_6600864_+	cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like	NA|289aa|up_2|NC_008278.1_6600988_6601855_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|174aa|up_1|NC_008278.1_6601870_6602392_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|381aa|up_0|NC_008278.1_6602728_6603871_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|173aa|down_0|NC_008278.1_6605002_6605521_-	PRK01371, PRK01371, Sec-independent protein translocase protein TatB	NA|455aa|down_1|NC_008278.1_6605587_6606952_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|252aa|down_2|NC_008278.1_6609157_6609913_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|295aa|down_3|NC_008278.1_6609909_6610794_-	PRK09647, PRK09647, RNA polymerase sigma factor SigE; Reviewed	NA|221aa|down_4|NC_008278.1_6610884_6611547_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|123aa|down_5|NC_008278.1_6613514_6613883_+	NA	NA|615aa|down_6|NC_008278.1_6613985_6615830_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|56aa|down_7|NC_008278.1_6615922_6616090_-	pfam11314, DUF3117, Protein of unknown function (DUF3117)	NA|121aa|down_8|NC_008278.1_6616311_6616674_-	TIGR03544, cell_division_initiation_protein_DivIVA, DivIVA domain	NA|271aa|down_9|NC_008278.1_6616889_6617702_+	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	17	6702876-6702971	16	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	ACGCGGTTCCGCGGAACACCATGATC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA,NA	NA|467aa|up_9|NC_008278.1_6692086_6693487_-	pfam11723, Aromatic_hydrox, Homotrimeric ring hydroxylase	NA|137aa|up_8|NC_008278.1_6693589_6694000_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|373aa|up_7|NC_008278.1_6693996_6695115_-	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]	NA|277aa|up_6|NC_008278.1_6695350_6696181_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|357aa|up_5|NC_008278.1_6696278_6697349_-	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|227aa|up_4|NC_008278.1_6697534_6698215_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|444aa|up_3|NC_008278.1_6698262_6699594_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|135aa|up_2|NC_008278.1_6699626_6700031_-	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|297aa|up_1|NC_008278.1_6700470_6701361_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|390aa|up_0|NC_008278.1_6701498_6702668_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|202aa|down_0|NC_008278.1_6703157_6703763_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|304aa|down_1|NC_008278.1_6704316_6705228_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|266aa|down_2|NC_008278.1_6705227_6706025_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|348aa|down_3|NC_008278.1_6706024_6707068_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|310aa|down_4|NC_008278.1_6707082_6708012_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|571aa|down_5|NC_008278.1_6708134_6709847_+	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|438aa|down_6|NC_008278.1_6710083_6711397_+	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|430aa|down_7|NC_008278.1_6711480_6712770_+	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|165aa|down_8|NC_008278.1_6712806_6713301_+	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|280aa|down_9|NC_008278.1_6713394_6714234_+	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain
GCF_000058485.1_ASM5848v1	NC_008278	Frankia alni ACN14a, complete genome	18	7190081-7190216	17	CRISPRCasFinder	no		csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	Orphan	GCCGAACACGTGACCCTGGCCGAACACG	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DEDDh,c2c9_V-U4,cas6,cas8b2,cas4	NA|210aa|up_6|NC_008278.1_7181952_7182582_+,NA|202aa|down_2|NC_008278.1_7193453_7194059_-,NA|254aa|down_7|NC_008278.1_7202151_7202913_-	NA|266aa|up_9|NC_008278.1_7178855_7179653_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|364aa|up_8|NC_008278.1_7179618_7180710_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|71aa|up_7|NC_008278.1_7180763_7180976_-	cd19178, SET_SETD6, SET domain found in SET domain-containing protein 6 (SETD6) and similar proteins	NA|210aa|up_6|NC_008278.1_7181952_7182582_+	NA	NA|524aa|up_5|NC_008278.1_7182715_7184287_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|487aa|up_4|NC_008278.1_7184352_7185813_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|192aa|up_3|NC_008278.1_7185843_7186419_-	pfam10759, DUF2587, Protein of unknown function (DUF2587)	NA|331aa|up_2|NC_008278.1_7186550_7187543_-	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|216aa|up_1|NC_008278.1_7187587_7188235_-	cd02062, Nitro_FMN_reductase, nitroreductase family protein	NA|66aa|up_0|NC_008278.1_7188275_7188473_-	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|501aa|down_0|NC_008278.1_7190374_7191877_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|140aa|down_1|NC_008278.1_7192933_7193353_+	pfam12823, DUF3817, Domain of unknown function (DUF3817)	NA|202aa|down_2|NC_008278.1_7193453_7194059_-	NA	NA|296aa|down_3|NC_008278.1_7195055_7195943_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|158aa|down_4|NC_008278.1_7196477_7196951_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|501aa|down_5|NC_008278.1_7197213_7198716_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|887aa|down_6|NC_008278.1_7199246_7201907_-	TIGR01667, Uncharacterized_protein_HI_1680, integral membrane protein, YccS/YhfK family	NA|254aa|down_7|NC_008278.1_7202151_7202913_-	NA	NA|347aa|down_8|NC_008278.1_7202909_7203950_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|235aa|down_9|NC_008278.1_7204177_7204882_-	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins
