assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000048665.1_ASM4866v1	NC_006369	Legionella pneumophila str. Lens, complete genome	1	2608194-2608360	1	CRISPRCasFinder	no		cas3,RT,csa3,DEDDh,DinG,WYL,PrimPol,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Orphan	AAATTTACCGCGATAACAGTAATTT	25	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,DEDDh,DinG,WYL,PrimPol,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|223aa|up_0|NC_006369.1_2607283_2607952_+,NA|145aa|down_6|NC_006369.1_2615307_2615742_+,NA|485aa|down_8|NC_006369.1_2617352_2618807_+	NA|376aa|up_9|NC_006369.1_2593574_2594702_+	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|470aa|up_8|NC_006369.1_2594733_2596143_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|278aa|up_7|NC_006369.1_2596496_2597330_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|334aa|up_6|NC_006369.1_2597754_2598756_-	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|80aa|up_5|NC_006369.1_2598960_2599200_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|148aa|up_4|NC_006369.1_2599402_2599846_+	pfam09424, YqeY, Yqey-like protein	NA|579aa|up_3|NC_006369.1_2599854_2601591_+	PRK05667, dnaG, DNA primase; Validated	NA|622aa|up_2|NC_006369.1_2601677_2603543_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|504aa|up_1|NC_006369.1_2605733_2607245_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|223aa|up_0|NC_006369.1_2607283_2607952_+	NA	NA|75aa|down_0|NC_006369.1_2608381_2608606_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|103aa|down_1|NC_006369.1_2608605_2608914_+	TIGR03071, couple_hipA, HipA N-terminal domain	NA|313aa|down_2|NC_006369.1_2608910_2609849_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|363aa|down_3|NC_006369.1_2610373_2611462_-	pfam00665, rve, Integrase core domain	NA|458aa|down_4|NC_006369.1_2611817_2613191_+	pfam13173, AAA_14, AAA domain	NA|302aa|down_5|NC_006369.1_2613389_2614295_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|145aa|down_6|NC_006369.1_2615307_2615742_+	NA	NA|213aa|down_7|NC_006369.1_2615809_2616448_-	pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase	NA|485aa|down_8|NC_006369.1_2617352_2618807_+	NA	NA|303aa|down_9|NC_006369.1_2619172_2620081_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain
GCF_000048665.1_ASM4866v1	NC_006369	Legionella pneumophila str. Lens, complete genome	2	3243127-3246277	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas3,RT,csa3,DEDDh,DinG,WYL,PrimPol,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	51,52,52	52	TypeI-F	cas3,RT,csa3,DEDDh,DinG,WYL,PrimPol,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|496aa|up_9|NC_006369.1_3229720_3231208_+,NA|64aa|up_7|NC_006369.1_3232769_3232961_+,NA|168aa|down_0|NC_006369.1_3248250_3248754_-	NA|496aa|up_9|NC_006369.1_3229720_3231208_+	NA	NA|299aa|up_8|NC_006369.1_3231605_3232502_-	pfam00153, Mito_carr, Mitochondrial carrier protein	NA|64aa|up_7|NC_006369.1_3232769_3232961_+	NA	NA|97aa|up_6|NC_006369.1_3233250_3233541_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	cas1|323aa|up_5|NC_006369.1_3234733_3235702_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1132aa|up_4|NC_006369.1_3235698_3239094_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|422aa|up_3|NC_006369.1_3239086_3240352_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|314aa|up_2|NC_006369.1_3240348_3241290_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|up_1|NC_006369.1_3241305_3242331_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NC_006369.1_3242340_3242895_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|168aa|down_0|NC_006369.1_3248250_3248754_-	NA	NA|349aa|down_1|NC_006369.1_3248863_3249910_-	COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]	NA|321aa|down_2|NC_006369.1_3250214_3251177_-	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase	NA|140aa|down_3|NC_006369.1_3251744_3252164_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|109aa|down_4|NC_006369.1_3252156_3252483_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|398aa|down_5|NC_006369.1_3252639_3253833_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|230aa|down_6|NC_006369.1_3253829_3254519_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|382aa|down_7|NC_006369.1_3254511_3255657_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|543aa|down_8|NC_006369.1_3255653_3257282_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|277aa|down_9|NC_006369.1_3257325_3258156_-	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase
GCF_000048665.1_ASM4866v1	NC_006369	Legionella pneumophila str. Lens, complete genome	3	3246643-3247392	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	cas3,RT,csa3,DEDDh,DinG,WYL,PrimPol,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,12,12	12	TypeI-F	cas3,RT,csa3,DEDDh,DinG,WYL,PrimPol,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|496aa|up_9|NC_006369.1_3229720_3231208_+,NA|64aa|up_7|NC_006369.1_3232769_3232961_+,NA|168aa|down_0|NC_006369.1_3248250_3248754_-	NA|496aa|up_9|NC_006369.1_3229720_3231208_+	NA	NA|299aa|up_8|NC_006369.1_3231605_3232502_-	pfam00153, Mito_carr, Mitochondrial carrier protein	NA|64aa|up_7|NC_006369.1_3232769_3232961_+	NA	NA|97aa|up_6|NC_006369.1_3233250_3233541_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	cas1|323aa|up_5|NC_006369.1_3234733_3235702_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1132aa|up_4|NC_006369.1_3235698_3239094_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|422aa|up_3|NC_006369.1_3239086_3240352_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|314aa|up_2|NC_006369.1_3240348_3241290_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|up_1|NC_006369.1_3241305_3242331_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NC_006369.1_3242340_3242895_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|168aa|down_0|NC_006369.1_3248250_3248754_-	NA	NA|349aa|down_1|NC_006369.1_3248863_3249910_-	COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]	NA|321aa|down_2|NC_006369.1_3250214_3251177_-	TIGR02283, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase	NA|140aa|down_3|NC_006369.1_3251744_3252164_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|109aa|down_4|NC_006369.1_3252156_3252483_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|398aa|down_5|NC_006369.1_3252639_3253833_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|230aa|down_6|NC_006369.1_3253829_3254519_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|382aa|down_7|NC_006369.1_3254511_3255657_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|543aa|down_8|NC_006369.1_3255653_3257282_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|277aa|down_9|NC_006369.1_3257325_3258156_-	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase
GCF_000048665.1_ASM4866v1	NC_006366	Legionella pneumophila str. Lens plasmid pLPL, complete sequence	1	43276-46483	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	53,53,23	53	TypeI-F	cas3,RT,csa3,DEDDh,DinG,WYL,PrimPol,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	NA|54aa|up_5|NC_006366.1_37965_38127_-,NA|178aa|up_4|NC_006366.1_38699_39233_-,NA|97aa|up_3|NC_006366.1_40499_40790_+,NA|175aa|up_2|NC_006366.1_40780_41305_+,NA|326aa|down_7|NC_006366.1_55405_56383_-	NA|108aa|up_9|NC_006366.1_34427_34751_+	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	NA|135aa|up_8|NC_006366.1_35322_35727_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|66aa|up_7|NC_006366.1_35723_35921_-	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|288aa|up_6|NC_006366.1_36792_37656_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|54aa|up_5|NC_006366.1_37965_38127_-	NA	NA|178aa|up_4|NC_006366.1_38699_39233_-	NA	NA|97aa|up_3|NC_006366.1_40499_40790_+	NA	NA|175aa|up_2|NC_006366.1_40780_41305_+	NA	NA|144aa|up_1|NC_006366.1_41533_41965_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|189aa|up_0|NC_006366.1_42193_42760_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	cas6f|185aa|down_0|NC_006366.1_46714_47269_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|342aa|down_1|NC_006366.1_47279_48305_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|314aa|down_2|NC_006366.1_48320_49262_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|422aa|down_3|NC_006366.1_49258_50524_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3-cas2|1132aa|down_4|NC_006366.1_50516_53912_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|323aa|down_5|NC_006366.1_53908_54877_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|91aa|down_6|NC_006366.1_55063_55336_-	COG1961, PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]	NA|326aa|down_7|NC_006366.1_55405_56383_-	NA	NA|426aa|down_8|NC_006366.1_56807_58085_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|169aa|down_9|NC_006366.1_58071_58578_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit
