The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_005956	Bartonella henselae str. Houston-1, complete genome	1931047	338115	429429	1931047	head,plate,tail,portal,tRNA,integrase,capsid,terminase	Haemophilus_phage(13.46%)	98	371268:371286	426110:426128
WP_011180208.1|338115_341031_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	24.8	8.8e-63
WP_011180209.1|341226_341820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011180210.1|341882_342329_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_011180211.1|342604_344002_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011180212.1|343982_344552_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011180213.1|347406_348738_+	TldD/PmbA family protein	NA	NA	NA	NA	NA
WP_034447481.1|348724_349528_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA	NA
WP_011180215.1|349573_349819_+	DUF4170 domain-containing protein	NA	K4JVU0	Caulobacter_phage	37.9	2.0e-05
WP_011180216.1|350642_351965_+	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_011180217.1|351954_352974_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_011180218.1|353018_353255_-	DUF2093 domain-containing protein	NA	NA	NA	NA	NA
WP_011180219.1|353375_355214_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	39.9	7.1e-111
WP_011180220.1|355511_356600_+	2'-deoxycytidine 5'-triphosphate deaminase	NA	NA	NA	NA	NA
WP_011180221.1|357435_358587_+	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA	NA
WP_011180223.1|361074_361395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180224.1|361575_363003_+	amino acid permease	NA	NA	NA	NA	NA
WP_011180225.1|363044_363725_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	27.9	7.9e-15
WP_011180226.1|363721_364360_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_011180227.1|364373_364928_+	biotin transporter BioY	NA	NA	NA	NA	NA
WP_038525120.1|368963_369407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034447472.1|370096_370324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034447468.1|370455_370674_+	hypothetical protein	NA	NA	NA	NA	NA
371268:371286	attL	AAGTGGTGCCCAGACGCGG	NA	NA	NA	NA
WP_011180232.1|371484_372642_+|integrase	site-specific integrase	integrase	A0A1X9HVL9	Ruegeria_phage	40.8	8.0e-76
WP_011180234.1|372913_373504_+	antA/AntB antirepressor family protein	NA	Q7Y5W2	Haemophilus_phage	49.6	6.2e-24
WP_011180235.1|373623_373899_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_011180236.1|373911_374202_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_034447463.1|374324_374537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180238.1|374665_374893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180239.1|374889_375552_-	glycoside hydrolase family protein	NA	A0A141GEY9	Brucella_phage	61.5	2.6e-47
WP_011180240.1|375711_376014_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	45.8	5.4e-16
WP_011180241.1|376000_376321_+	putative addiction module antidote protein	NA	A0A141GEX5	Brucella_phage	46.2	3.3e-16
WP_011180242.1|376364_376643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180243.1|376639_377371_-	phage antirepressor Ant	NA	Q7Y5W2	Haemophilus_phage	40.7	1.4e-46
WP_011180244.1|377622_378195_-	antA/AntB antirepressor family protein	NA	Q7Y5W2	Haemophilus_phage	40.7	8.9e-28
WP_011180245.1|378222_378771_-	phage antirepressor Ant	NA	A0A0N6WET9	Escherichia_phage	52.6	5.9e-21
WP_011180246.1|379082_380390_-	phage late control protein	NA	K4HZC6	Acidithiobacillus_phage	39.8	1.6e-69
WP_011180247.1|380386_380611_-|tail	tail protein X	tail	A0A2H4J946	uncultured_Caudovirales_phage	53.1	8.3e-06
WP_011180248.1|380607_380988_-|tail	phage tail protein	tail	D5LGY3	Escherichia_phage	43.1	5.7e-23
WP_011180249.1|380993_383294_-|tail	tail protein	tail	A0A0E3U2N9	Fusobacterium_phage	26.7	5.4e-15
WP_075320635.1|383290_383407_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_011180250.1|383403_383688_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_011180251.1|383689_384196_-|tail	phage major tail tube protein	tail	K4I1G5	Acidithiobacillus_phage	42.2	2.6e-31
WP_011180252.1|384195_385428_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A088FVH5	Escherichia_phage	52.2	1.9e-128
WP_011180253.1|385897_386419_+	Rha family transcriptional regulator	NA	A0A159B6D5	Gordonia_phage	57.1	3.8e-25
WP_011180254.1|386464_386794_-	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_011180255.1|386881_387061_+	hypothetical protein	NA	A0A222YXG1	Escherichia_phage	62.5	4.3e-13
WP_011180256.1|387356_388682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180257.1|388696_391840_-	DUF4815 domain-containing protein	NA	K4ICQ5	Acidithiobacillus_phage	34.9	6.2e-155
WP_011180258.1|391841_392948_-	hypothetical protein	NA	K4I1F8	Acidithiobacillus_phage	36.4	5.0e-19
WP_011180259.1|392947_393775_-|plate	baseplate J/gp47 family protein	plate	A0A219VH98	Ochrobactrum_phage	34.9	1.7e-40
WP_011180260.1|393771_394101_-	GPW/gp25 family protein	NA	Q75QM0	Wolbachia_phage	59.3	4.9e-31
WP_011180261.1|394109_394799_-|plate	phage baseplate assembly protein V	plate	V5YUM9	Pseudomonas_phage	34.5	4.1e-19
WP_011180262.1|394779_395322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180263.1|395373_395646_+	toxin HicA	NA	A0A2P1A0R7	Gordonia_phage	60.0	1.0e-05
WP_004856761.1|395635_395953_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_011180264.1|396193_396472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180265.1|396468_397227_-	phage antirepressor Ant	NA	Q7Y5W2	Haemophilus_phage	38.3	1.7e-42
WP_011180266.1|397245_397800_-	phage antirepressor Ant	NA	Q7Y5W2	Haemophilus_phage	56.2	2.4e-22
WP_011180267.1|398184_399258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011180268.1|399293_399647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180269.1|399648_400725_-|capsid	major capsid protein	capsid	A0A0A8ILA9	Aurantimonas_phage	35.2	3.8e-56
WP_011180270.1|400737_401106_-|head	head decoration protein	head	A0A0A8IL52	Aurantimonas_phage	46.1	5.7e-12
WP_049784565.1|401102_401423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034454126.1|401365_402409_-	S49 family peptidase	NA	K4HZZ6	Acidithiobacillus_phage	46.6	8.3e-64
WP_011180273.1|402398_403955_-|portal	phage portal protein	portal	Q75QM9	Wolbachia_phage	35.5	3.5e-74
WP_011180274.1|403954_404203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180275.1|404206_406135_-|terminase	phage terminase large subunit family protein	terminase	K4I3Y9	Acidithiobacillus_phage	52.4	1.8e-165
WP_011180276.1|406127_406709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180277.1|406771_407086_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	39.8	1.6e-10
WP_011180278.1|407102_407399_+	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	49.4	6.4e-14
WP_011180280.1|407808_408072_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_011180281.1|408058_408340_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_011180242.1|408382_408661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180282.1|408657_409416_-	phage antirepressor Ant	NA	Q7Y5W2	Haemophilus_phage	40.7	3.0e-47
WP_011180283.1|409475_409991_-	phage antirepressor Ant	NA	Q7Y5W2	Haemophilus_phage	55.6	7.8e-23
WP_011180285.1|410878_411421_-	phage antirepressor Ant	NA	A0A0P0ZG08	Escherichia_phage	46.9	1.6e-18
WP_011180287.1|412017_412596_-	hypothetical protein	NA	A0A0A8IL87	Aurantimonas_phage	35.0	3.8e-10
WP_011180288.1|412599_412920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180290.1|413392_413788_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0U4ISP5	Pseudomonas_phage	31.1	1.7e-06
WP_011180293.1|414598_415045_-	single-stranded DNA-binding protein	NA	A0A0K1LLZ9	Caulobacter_phage	55.7	6.7e-31
WP_034447441.1|415536_415830_+	HigA family addiction module antidote protein	NA	A0A0M3LPV0	Mannheimia_phage	46.6	6.0e-12
WP_038525124.1|416363_416783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180297.1|416775_417888_-	DUF1376 domain-containing protein	NA	A0A218M9P5	Mycobacterium_phage	51.5	1.6e-12
WP_011180298.1|417877_418225_-	DUF1376 domain-containing protein	NA	A0A076GD06	Sinorhizobium_phage	44.1	1.6e-16
WP_011180299.1|418217_418694_-	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	63.8	3.7e-51
WP_011180300.1|418821_419598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099358257.1|419606_419972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034447428.1|420071_420431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180303.1|420514_421132_+	transcriptional regulator	NA	K7PH71	Enterobacterial_phage	27.1	1.4e-05
WP_011180304.1|421373_421748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011180305.1|421812_422205_+	Rha family transcriptional regulator	NA	B5AX29	Iodobacteriophage	49.5	2.5e-21
WP_011180308.1|422986_423370_+	hypothetical protein	NA	K4Q356	Edwardsiella_phage	57.9	1.0e-11
WP_011180311.1|423811_424591_+	ERF family protein	NA	K4NWX3	Pseudomonas_phage	31.5	2.4e-15
WP_011180312.1|424592_425216_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	45.1	1.9e-44
WP_011180313.1|425244_425736_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	42.4	3.5e-33
WP_011180314.1|425808_426012_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011180315.1|426587_427751_+	phosphoserine transaminase	NA	NA	NA	NA	NA
426110:426128	attR	AAGTGGTGCCCAGACGCGG	NA	NA	NA	NA
WP_011180316.1|428139_429429_+	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	31.8	4.3e-54
>prophage 2
NC_005956	Bartonella henselae str. Houston-1, complete genome	1931047	805806	814886	1931047	integrase	Mannheimia_phage(22.22%)	14	802190:802202	808021:808033
802190:802202	attL	TGATTTTGTCAGC	NA	NA	NA	NA
WP_011180600.1|805806_806088_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A0M3LQB1	Mannheimia_phage	45.1	1.1e-15
WP_011180601.1|806106_806406_+	HigA family addiction module antidote protein	NA	A0A0M3LPV0	Mannheimia_phage	47.7	2.8e-17
WP_011180602.1|806462_807500_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A291AUF0	Sinorhizobium_phage	30.3	4.1e-31
WP_034448587.1|807502_807751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180604.1|807861_808485_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	43.6	7.4e-44
808021:808033	attR	GCTGACAAAATCA	NA	NA	NA	NA
WP_011180311.1|808486_809266_-	ERF family protein	NA	K4NWX3	Pseudomonas_phage	31.5	2.4e-15
WP_011180308.1|809707_810091_-	hypothetical protein	NA	K4Q356	Edwardsiella_phage	57.9	1.0e-11
WP_011180605.1|810103_810835_-	phage regulatory protein/antirepressor Ant	NA	B5AX29	Iodobacteriophage	41.3	5.1e-28
WP_011180606.1|810849_811206_-	antA/AntB antirepressor family protein	NA	NA	NA	NA	NA
WP_011180607.1|811269_811644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099358259.1|811882_812152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011180610.1|812670_813030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011180611.1|813166_813646_+	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	64.0	1.4e-50
WP_011180612.1|813635_814886_+	DUF1376 domain-containing protein	NA	A0A218M9P5	Mycobacterium_phage	52.9	5.5e-14
>prophage 3
NC_005956	Bartonella henselae str. Houston-1, complete genome	1931047	1116639	1127364	1931047	tRNA	uncultured_Mediterranean_phage(71.43%)	7	NA	NA
WP_011180873.1|1116639_1117758_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	52.1	1.0e-96
WP_011180874.1|1118921_1119434_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.6	1.2e-47
WP_011180875.1|1119456_1120029_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.7	1.2e-43
WP_034448154.1|1120018_1120537_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.0	7.1e-24
WP_011180877.1|1120561_1123357_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.7	7.0e-102
WP_011180878.1|1123589_1124108_-	single-stranded DNA-binding protein	NA	A0A0K1LLZ9	Caulobacter_phage	59.3	1.1e-45
WP_011180879.1|1124448_1127364_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	60.5	0.0e+00
