assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000027205.1_ASM2720v1	NC_013971	Erwinia amylovora ATCC 49946, complete genome	1	854678-856841	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Type I-E	GTGTTCCCCGCGTGAGCGGGGATAAACCG,GTGTTCCCCGCGTGAGCGGGGATAAACCG,GTGTTCCCCGCGTGAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	34,35,35	35	TypeI-E	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|476aa|up_9|NC_013971.1_845123_846551_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|234aa|up_8|NC_013971.1_846658_847360_+	pfam00106, adh_short, short chain dehydrogenase	NA|225aa|up_7|NC_013971.1_847373_848048_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|206aa|up_6|NC_013971.1_848044_848662_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|204aa|up_5|NC_013971.1_848600_849212_+	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|329aa|up_4|NC_013971.1_849252_850239_-	cd05282, ETR_like, 2-enoyl thioester reductase-like	NA|145aa|up_3|NC_013971.1_850285_850720_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|500aa|up_2|NC_013971.1_850719_852219_+	PRK07638, PRK07638, acyl-CoA synthetase; Validated	NA|402aa|up_1|NC_013971.1_852181_853387_+	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|261aa|up_0|NC_013971.1_853388_854171_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|187aa|down_0|NC_013971.1_856842_857403_+	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|268aa|down_1|NC_013971.1_857480_858284_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|270aa|down_2|NC_013971.1_858336_859146_+	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	cas3|878aa|down_3|NC_013971.1_859459_862093_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_4|NC_013971.1_862089_863613_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|157aa|down_5|NC_013971.1_863596_864067_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|365aa|down_6|NC_013971.1_864063_865158_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|219aa|down_7|NC_013971.1_865160_865817_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|201aa|down_8|NC_013971.1_865813_866416_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|down_9|NC_013971.1_866455_867373_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI
GCF_000027205.1_ASM2720v1	NC_013971	Erwinia amylovora ATCC 49946, complete genome	2	867748-869731	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Type I-E	GTGTTCCCCGCGTATGCGGGGATAAACCG,GTGTTCCCCGCGTATGCGGGGATAAACCG,GTGTTCCCCGCGTATGCGGGGATAAACCG	29,29,29	1	1	868510-868541	NC_013971.1_2427872-2427841	I-E:I-E:I-E	31,32,32	32	TypeI-E	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA|157aa|down_0|NC_013971.1_869897_870368_-,NA|63aa|down_9|NC_013971.1_880998_881187_+	NA|268aa|up_9|NC_013971.1_857480_858284_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|270aa|up_8|NC_013971.1_858336_859146_+	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	cas3|878aa|up_7|NC_013971.1_859459_862093_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NC_013971.1_862089_863613_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|157aa|up_5|NC_013971.1_863596_864067_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|365aa|up_4|NC_013971.1_864063_865158_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|219aa|up_3|NC_013971.1_865160_865817_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|201aa|up_2|NC_013971.1_865813_866416_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NC_013971.1_866455_867373_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NC_013971.1_867374_867659_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|157aa|down_0|NC_013971.1_869897_870368_-	NA	NA|250aa|down_1|NC_013971.1_870364_871114_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|866aa|down_2|NC_013971.1_871871_874469_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|down_3|NC_013971.1_874640_875003_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|268aa|down_4|NC_013971.1_875090_875894_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|286aa|down_5|NC_013971.1_875915_876773_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|down_6|NC_013971.1_876873_877221_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|537aa|down_7|NC_013971.1_877401_879012_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|226aa|down_8|NC_013971.1_880257_880935_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|63aa|down_9|NC_013971.1_880998_881187_+	NA
GCF_000027205.1_ASM2720v1	NC_013971	Erwinia amylovora ATCC 49946, complete genome	3	879195-879523	3,3	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Type I-E	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGNTTAGANA	28,28	0	0	NA	NA	I-F:I-F	5,5	5	TypeI-E	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA|157aa|up_7|NC_013971.1_869897_870368_-,NA|63aa|down_1|NC_013971.1_880998_881187_+	cas1|306aa|up_9|NC_013971.1_866455_867373_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_8|NC_013971.1_867374_867659_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|157aa|up_7|NC_013971.1_869897_870368_-	NA	NA|250aa|up_6|NC_013971.1_870364_871114_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|866aa|up_5|NC_013971.1_871871_874469_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|up_4|NC_013971.1_874640_875003_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|268aa|up_3|NC_013971.1_875090_875894_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|286aa|up_2|NC_013971.1_875915_876773_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|up_1|NC_013971.1_876873_877221_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|537aa|up_0|NC_013971.1_877401_879012_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|226aa|down_0|NC_013971.1_880257_880935_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|63aa|down_1|NC_013971.1_880998_881187_+	NA	NA|427aa|down_2|NC_013971.1_881261_882542_-	PRK07049, PRK07049, cystathionine gamma-synthase family protein	NA|179aa|down_3|NC_013971.1_882795_883332_+	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|221aa|down_4|NC_013971.1_883431_884094_-	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|309aa|down_5|NC_013971.1_884326_885253_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|257aa|down_6|NC_013971.1_885249_886020_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|127aa|down_7|NC_013971.1_886087_886468_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|285aa|down_8|NC_013971.1_886531_887386_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|265aa|down_9|NC_013971.1_887401_888196_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
GCF_000027205.1_ASM2720v1	NC_013971	Erwinia amylovora ATCC 49946, complete genome	4	3416072-3416157	4	CRISPRCasFinder	no		cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	TTAGCTCCCCGCGCGGACGCGGGCT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,DEDDh,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|242aa|up_9|NC_013971.1_3398024_3398750_-	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|780aa|up_8|NC_013971.1_3399539_3401879_-	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|1845aa|up_7|NC_013971.1_3402865_3408400_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|586aa|up_6|NC_013971.1_3408438_3410196_+	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	NA|166aa|up_5|NC_013971.1_3410339_3410837_-	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional	NA|214aa|up_4|NC_013971.1_3410841_3411483_-	PRK09481, sspA, stringent starvation protein A; Provisional	NA|131aa|up_3|NC_013971.1_3411791_3412184_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|143aa|up_2|NC_013971.1_3412199_3412628_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|376aa|up_1|NC_013971.1_3412872_3414000_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|133aa|up_0|NC_013971.1_3414176_3414575_+	PRK11677, PRK11677, DUF1043 family protein	NA|354aa|down_0|NC_013971.1_3416214_3417276_+	PRK10898, PRK10898, serine endoprotease DegS	NA|312aa|down_1|NC_013971.1_3417324_3418260_-	PRK05086, PRK05086, malate dehydrogenase; Provisional	NA|157aa|down_2|NC_013971.1_3418704_3419175_+	PRK05066, PRK05066, transcriptional regulator ArgR	NA|88aa|down_3|NC_013971.1_3419670_3419934_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|90aa|down_4|NC_013971.1_3420045_3420315_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|653aa|down_5|NC_013971.1_3420527_3422486_-	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional	NA|311aa|down_6|NC_013971.1_3422499_3423432_-	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|68aa|down_7|NC_013971.1_3423439_3423643_-	PRK11594, PRK11594, efflux system membrane protein; Provisional	NA|306aa|down_8|NC_013971.1_3423920_3424838_+	PRK10632, PRK10632, HTH-type transcriptional activator AaeR	NA|482aa|down_9|NC_013971.1_3424941_3426387_-	PRK10735, tldD, protease TldD; Provisional
