assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	1	5068-5145	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	AGCCGCCATCCGGCAATGTTCCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA|22aa|up_3|NC_013716.1_165_231_+,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|22aa|up_3|NC_013716.1_165_231_+	NA	NA|821aa|up_2|NC_013716.1_312_2775_+	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional	NA|310aa|up_1|NC_013716.1_2777_3707_+	PRK01212, PRK01212, homoserine kinase; Provisional	NA|429aa|up_0|NC_013716.1_3710_4997_+	PRK09225, PRK09225, threonine synthase; Validated	NA|258aa|down_0|NC_013716.1_5146_5920_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|477aa|down_1|NC_013716.1_5989_7420_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|318aa|down_2|NC_013716.1_7690_8644_+	PRK05269, PRK05269, transaldolase B; Provisional	NA|196aa|down_3|NC_013716.1_8757_9345_+	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional	NA|436aa|down_4|NC_013716.1_9466_10774_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|189aa|down_5|NC_013716.1_10808_11375_-	PRK10659, PRK10659, acetate uptake transporter	NA|639aa|down_6|NC_013716.1_11730_13647_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|377aa|down_7|NC_013716.1_13733_14864_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|317aa|down_8|NC_013716.1_15161_16112_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|117aa|down_9|NC_013716.1_16227_16578_+	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	2	592346-592467	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	TGGCCAGGCCTGATAAGCGCAGCGCCTTCAGG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|1121aa|up_9|NC_013716.1_579931_583294_+	PRK11281, PRK11281, mechanosensitive channel MscK	NA|323aa|up_8|NC_013716.1_583873_584842_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|56aa|up_7|NC_013716.1_585377_585545_-	PRK11038, PRK11038, hypothetical protein; Provisional	NA|176aa|up_6|NC_013716.1_585559_586087_-	PRK10093, PRK10093, primosomal replication protein N''; Provisional	NA|126aa|up_5|NC_013716.1_586156_586534_+	PRK10527, PRK10527, DUF454 family protein	NA|184aa|up_4|NC_013716.1_586738_587290_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|644aa|up_3|NC_013716.1_587378_589310_+	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|110aa|up_2|NC_013716.1_589363_589693_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|202aa|up_1|NC_013716.1_589692_590298_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|625aa|up_0|NC_013716.1_590408_592283_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|215aa|down_0|NC_013716.1_592701_593346_+	PRK00279, adk, adenylate kinase; Reviewed	NA|321aa|down_1|NC_013716.1_593525_594488_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|320aa|down_2|NC_013716.1_594484_595444_-	PRK10162, PRK10162, acetyl esterase	NA|435aa|down_3|NC_013716.1_595584_596889_+	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|559aa|down_4|NC_013716.1_596949_598626_-	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|407aa|down_5|NC_013716.1_598841_600062_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|548aa|down_6|NC_013716.1_600223_601867_+	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|160aa|down_7|NC_013716.1_602100_602580_-	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA|265aa|down_8|NC_013716.1_602781_603576_-	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|834aa|down_9|NC_013716.1_603721_606223_-	PRK10671, copA, copper-exporting P-type ATPase CopA
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	3	601918-602045	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	GAATCTACGATTTATGAACCGTAGGCCGGATAAGGCG	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|110aa|up_9|NC_013716.1_589363_589693_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|202aa|up_8|NC_013716.1_589692_590298_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|625aa|up_7|NC_013716.1_590408_592283_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|215aa|up_6|NC_013716.1_592701_593346_+	PRK00279, adk, adenylate kinase; Reviewed	NA|321aa|up_5|NC_013716.1_593525_594488_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|320aa|up_4|NC_013716.1_594484_595444_-	PRK10162, PRK10162, acetyl esterase	NA|435aa|up_3|NC_013716.1_595584_596889_+	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|559aa|up_2|NC_013716.1_596949_598626_-	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|407aa|up_1|NC_013716.1_598841_600062_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|548aa|up_0|NC_013716.1_600223_601867_+	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|160aa|down_0|NC_013716.1_602100_602580_-	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA|265aa|down_1|NC_013716.1_602781_603576_-	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|834aa|down_2|NC_013716.1_603721_606223_-	PRK10671, copA, copper-exporting P-type ATPase CopA	NA|138aa|down_3|NC_013716.1_606331_606745_+	PRK10227, PRK10227, HTH-type transcriptional regulator CueR	NA|154aa|down_4|NC_013716.1_606745_607207_-	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|305aa|down_5|NC_013716.1_607206_608121_-	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|226aa|down_6|NC_013716.1_608264_608942_+	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional	NA|260aa|down_7|NC_013716.1_608928_609708_+	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|285aa|down_8|NC_013716.1_609782_610637_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|257aa|down_9|NC_013716.1_610695_611466_-	PRK08017, PRK08017, SDR family oxidoreductase
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	4	736850-736941	4	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	ATGCCGGAATCAGAATCCGGTGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|242aa|up_9|NC_013716.1_725721_726447_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|225aa|up_8|NC_013716.1_726446_727121_-	PRK15107, PRK15107, glutamate/aspartate ABC transporter permease GltK	NA|247aa|up_7|NC_013716.1_727120_727861_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|303aa|up_6|NC_013716.1_728023_728932_-	PRK10797, PRK10797, glutamate and aspartate transporter subunit; Provisional	NA|513aa|up_5|NC_013716.1_729316_730855_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|293aa|up_4|NC_013716.1_730877_731756_-	PRK15094, PRK15094, magnesium/cobalt transporter CorC	NA|156aa|up_3|NC_013716.1_731915_732383_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|349aa|up_2|NC_013716.1_732379_733426_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|475aa|up_1|NC_013716.1_733778_735203_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|392aa|up_0|NC_013716.1_735348_736524_+	PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed	NA|555aa|down_0|NC_013716.1_737730_739395_-	PRK09431, asnB, asparagine synthetase B; Provisional	NA|251aa|down_1|NC_013716.1_739648_740401_-	PRK10444, PRK10444, HAD-IIA family hydrolase	NA|407aa|down_2|NC_013716.1_740446_741667_-	pfam00480, ROK, ROK family	NA|383aa|down_3|NC_013716.1_741675_742824_-	PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase; Provisional	NA|267aa|down_4|NC_013716.1_742883_743684_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|650aa|down_5|NC_013716.1_744023_745973_+	PRK10255, PRK10255, PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional	NA|524aa|down_6|NC_013716.1_746122_747694_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|down_7|NC_013716.1_747713_748061_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|226aa|down_8|NC_013716.1_748060_748738_-	pfam01527, HTH_Tnp_1, Transposase	NA|556aa|down_9|NC_013716.1_748887_750555_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	5	861716-861801	5	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	CCCCTTATCCGGCCTACGGCCTGATA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|242aa|up_9|NC_013716.1_849337_850063_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|562aa|up_8|NC_013716.1_850239_851925_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|507aa|up_7|NC_013716.1_851926_853447_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|159aa|up_6|NC_013716.1_853552_854029_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|up_5|NC_013716.1_854086_855376_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|up_4|NC_013716.1_855452_856493_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|up_3|NC_013716.1_856489_857647_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|up_2|NC_013716.1_857630_858386_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|229aa|up_1|NC_013716.1_858378_859065_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|up_0|NC_013716.1_859629_861651_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_0|NC_013716.1_861874_862783_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_1|NC_013716.1_863179_864169_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|171aa|down_2|NC_013716.1_864187_864700_+	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|162aa|down_3|NC_013716.1_864702_865188_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|82aa|down_4|NC_013716.1_865180_865426_+	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|151aa|down_5|NC_013716.1_865427_865880_+	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|235aa|down_6|NC_013716.1_865930_866635_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|321aa|down_7|NC_013716.1_866843_867806_-	COG0392, COG0392, Predicted integral membrane protein [Function unknown]	NA|414aa|down_8|NC_013716.1_867805_869047_-	PRK11263, PRK11263, cardiolipin synthase ClsB	NA|254aa|down_9|NC_013716.1_869043_869805_-	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	6	1111665-1111771	6	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	CTGGCCGGATAAGGCGCAGCCGCCATC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|1483aa|up_9|NC_013716.1_1090463_1094912_+	COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|1406aa|up_8|NC_013716.1_1095228_1099446_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|607aa|up_7|NC_013716.1_1099623_1101444_+	PRK10594, PRK10594, murein L,D-transpeptidase; Provisional	NA|183aa|up_6|NC_013716.1_1101621_1102170_+	COG3108, COG3108, Uncharacterized protein conserved in bacteria [Function unknown]	NA|216aa|up_5|NC_013716.1_1102189_1102837_+	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain	NA|397aa|up_4|NC_013716.1_1102921_1104112_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|374aa|up_3|NC_013716.1_1104295_1105417_-	PRK10002, PRK10002, porin OmpF	NA|467aa|up_2|NC_013716.1_1106005_1107406_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|401aa|up_1|NC_013716.1_1107570_1108773_-	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional	NA|871aa|up_0|NC_013716.1_1109039_1111652_+	PRK14015, pepN, aminopeptidase N; Provisional	NA|256aa|down_0|NC_013716.1_1111823_1112591_-	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional	NA|264aa|down_1|NC_013716.1_1112587_1113379_-	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC	NA|382aa|down_2|NC_013716.1_1113390_1114536_-	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional	NA|325aa|down_3|NC_013716.1_1114532_1115507_-	PRK11553, PRK11553, alkanesulfonate transporter substrate-binding subunit; Provisional	NA|192aa|down_4|NC_013716.1_1115499_1116075_-	PRK10569, PRK10569, NAD(P)H-dependent FMN reductase; Provisional	NA|337aa|down_5|NC_013716.1_1116318_1117329_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|181aa|down_6|NC_013716.1_1117505_1118048_+	pfam07126, ZapC, Cell-division protein ZapC	NA|370aa|down_7|NC_013716.1_1118044_1119154_-	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|703aa|down_8|NC_013716.1_1119251_1121360_+	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|636aa|down_9|NC_013716.1_1121372_1123280_+	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	7	1505303-1505433	7	CRISPRCasFinder	no	DEDDh	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|102aa|up_9|NC_013716.1_1495685_1495991_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|373aa|up_8|NC_013716.1_1496023_1497142_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|374aa|up_7|NC_013716.1_1497349_1498471_-	PRK06847, PRK06847, hypothetical protein; Provisional	NA|300aa|up_6|NC_013716.1_1498658_1499558_+	cd08462, PBP2_NodD, The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold	NA|386aa|up_5|NC_013716.1_1499693_1500851_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|307aa|up_4|NC_013716.1_1500877_1501798_+	cd08343, ED_TypeI_classII_C, C-terminal domain of type I, class II extradiol dioxygenases, catalytic domain	NA|122aa|up_3|NC_013716.1_1501800_1502166_+	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|327aa|up_2|NC_013716.1_1502143_1503124_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|268aa|up_1|NC_013716.1_1503138_1503942_+	pfam04199, Cyclase, Putative cyclase	NA|297aa|up_0|NC_013716.1_1503993_1504884_-	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion]	NA|458aa|down_0|NC_013716.1_1505591_1506965_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_1|NC_013716.1_1507181_1507823_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_2|NC_013716.1_1507859_1509008_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|402aa|down_3|NC_013716.1_1509297_1510503_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NC_013716.1_1510615_1511548_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NC_013716.1_1511544_1512570_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NC_013716.1_1512863_1512953_+	PRK14756, small_mem_YnhF, YnhF family membrane protein; Validated	NA|389aa|down_7|NC_013716.1_1513118_1514285_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NC_013716.1_1514357_1514939_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|270aa|down_9|NC_013716.1_1515064_1515874_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	8	1885615-1885771	8	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	GCCGCCATCCGACAAATTTTACCGCCTGATGGCGCTACGCTTATCAGGCCTACAG	55	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA|69aa|up_6|NC_013716.1_1879077_1879284_-,NA	NA|216aa|up_9|NC_013716.1_1874447_1875095_-	PRK11111, PRK11111, YchE family NAAT transporter	NA|892aa|up_8|NC_013716.1_1875570_1878246_+	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|209aa|up_7|NC_013716.1_1878373_1879000_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|69aa|up_6|NC_013716.1_1879077_1879284_-	NA	NA|138aa|up_5|NC_013716.1_1879602_1880016_+	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|303aa|up_4|NC_013716.1_1880160_1881069_-	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|338aa|up_3|NC_013716.1_1881269_1882283_-	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|up_2|NC_013716.1_1882374_1883283_-	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|153aa|up_1|NC_013716.1_1883394_1883853_+	PRK01617, PRK01617, hypothetical protein; Provisional	NA|281aa|up_0|NC_013716.1_1883904_1884747_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|226aa|down_0|NC_013716.1_1885854_1886532_-	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|237aa|down_1|NC_013716.1_1886531_1887242_-	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|512aa|down_2|NC_013716.1_1887238_1888774_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1248aa|down_3|NC_013716.1_1888770_1892514_-	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|464aa|down_4|NC_013716.1_1892960_1894352_-	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional	NA|599aa|down_5|NC_013716.1_1894692_1896489_+	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|217aa|down_6|NC_013716.1_1896481_1897132_+	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|469aa|down_7|NC_013716.1_1897132_1898539_-	PRK10177, PRK10177, YchO/YchP family invasin	NA|861aa|down_8|NC_013716.1_1898640_1901223_-	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|1331aa|down_9|NC_013716.1_1901219_1905212_-	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	9	1921484-1921560	9	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	CGCCTTATCCGGCCTACAGAGAG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA|852aa|down_5|NC_013716.1_1928481_1931037_-	NA|367aa|up_9|NC_013716.1_1911954_1913055_+	PRK10599, PRK10599, sodium-potassium/proton antiporter ChaA	NA|285aa|up_8|NC_013716.1_1913159_1914014_-	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|270aa|up_7|NC_013716.1_1914049_1914859_-	PRK10941, PRK10941, tetratricopeptide repeat-containing protein	NA|131aa|up_6|NC_013716.1_1914862_1915255_-	PRK10278, PRK10278, SirB family protein	NA|279aa|up_5|NC_013716.1_1915248_1916085_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|361aa|up_4|NC_013716.1_1916084_1917167_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|419aa|up_3|NC_013716.1_1917205_1918462_-	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|208aa|up_2|NC_013716.1_1918663_1919287_+	PRK00022, lolB, lipoprotein localization protein LolB	NA|284aa|up_1|NC_013716.1_1919283_1920135_+	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|316aa|up_0|NC_013716.1_1920400_1921348_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|561aa|down_0|NC_013716.1_1921733_1923416_+	PRK11660, PRK11660, putative transporter; Provisional	NA|93aa|down_1|NC_013716.1_1923471_1923750_-	PRK10692, PRK10692, stress response protein YchH	NA|195aa|down_2|NC_013716.1_1924025_1924610_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|364aa|down_3|NC_013716.1_1924726_1925818_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|857aa|down_4|NC_013716.1_1925908_1928479_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|852aa|down_5|NC_013716.1_1928481_1931037_-	NA	NA|216aa|down_6|NC_013716.1_1931349_1931997_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|172aa|down_7|NC_013716.1_1932017_1932533_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|314aa|down_8|NC_013716.1_1932545_1933487_-	PRK15292, PRK15292, type 1 fimbrial protein	NA|816aa|down_9|NC_013716.1_1933518_1935966_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	10	2917429-2917638	1	CRT	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	TCTCCGTCGGGGTTTCCGTTGGCGTCTCCG	30	0	0	NA	NA	NA	3	3	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA|185aa|up_9|NC_013716.1_2907627_2908182_-,NA|178aa|up_7|NC_013716.1_2909576_2910110_+,NA|218aa|down_0|NC_013716.1_2919749_2920403_-	NA|185aa|up_9|NC_013716.1_2907627_2908182_-	NA	NA|303aa|up_8|NC_013716.1_2908502_2909411_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|178aa|up_7|NC_013716.1_2909576_2910110_+	NA	NA|109aa|up_6|NC_013716.1_2910114_2910441_+	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]	NA|280aa|up_5|NC_013716.1_2910454_2911294_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|970aa|up_4|NC_013716.1_2911788_2914698_-	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL	NA|168aa|up_3|NC_013716.1_2914926_2915430_-	COG3518, COG3518, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|266aa|up_2|NC_013716.1_2915416_2916214_-	COG4455, ImpE, Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]	NA|288aa|up_1|NC_013716.1_2916231_2917095_-	NF033419, T6SS_TagK_dom, TagK domain-containing protein	NA|88aa|up_0|NC_013716.1_2917078_2917342_-	cd14742, PAAR_RHS, proline-alanine-alanine-arginine (PAAR) domain, also containing C-terminal Rearrangement hotspot (Rhs) extensions	NA|218aa|down_0|NC_013716.1_2919749_2920403_-	NA	NA|452aa|down_1|NC_013716.1_2924257_2925613_-	PRK08126, PRK08126, hypothetical protein; Provisional	NA|449aa|down_2|NC_013716.1_2925612_2926959_-	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|187aa|down_3|NC_013716.1_2926962_2927523_-	pfam12790, T6SS-SciN, Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113	NA|162aa|down_4|NC_013716.1_2927580_2928066_-	pfam05638, T6SS_HCP, Type VI secretion system effector, Hcp	NA|500aa|down_5|NC_013716.1_2928225_2929725_-	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|173aa|down_6|NC_013716.1_2929746_2930265_-	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|183aa|down_7|NC_013716.1_2930355_2930904_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|866aa|down_8|NC_013716.1_2930894_2933492_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_9|NC_013716.1_2933528_2934284_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	11	3135835-3135929	10	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	TTACCCCAGCTGTAAGCGAAGAGCTTACCGCT	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA|125aa|up_9|NC_013716.1_3123198_3123573_+,NA|154aa|up_8|NC_013716.1_3123882_3124344_+,NA|86aa|up_6|NC_013716.1_3125712_3125970_+,NA|67aa|up_5|NC_013716.1_3126408_3126609_+,NA|94aa|up_2|NC_013716.1_3128652_3128934_-,NA|153aa|up_0|NC_013716.1_3130678_3131137_+,NA	NA|125aa|up_9|NC_013716.1_3123198_3123573_+	NA	NA|154aa|up_8|NC_013716.1_3123882_3124344_+	NA	NA|323aa|up_7|NC_013716.1_3124365_3125334_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|86aa|up_6|NC_013716.1_3125712_3125970_+	NA	NA|67aa|up_5|NC_013716.1_3126408_3126609_+	NA	NA|231aa|up_4|NC_013716.1_3126936_3127629_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|212aa|up_3|NC_013716.1_3127644_3128280_-	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|94aa|up_2|NC_013716.1_3128652_3128934_-	NA	NA|257aa|up_1|NC_013716.1_3129020_3129791_+	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|153aa|up_0|NC_013716.1_3130678_3131137_+	NA	NA|499aa|down_0|NC_013716.1_3136315_3137812_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|715aa|down_1|NC_013716.1_3137816_3139961_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|427aa|down_2|NC_013716.1_3140025_3141306_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|285aa|down_3|NC_013716.1_3142671_3143526_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|95aa|down_4|NC_013716.1_3143522_3143807_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|382aa|down_5|NC_013716.1_3144331_3145477_+	pfam06872, EspG, EspG protein	NA|273aa|down_6|NC_013716.1_3145620_3146439_+	COG3204, COG3204, Uncharacterized protein conserved in bacteria [Function unknown]	NA|302aa|down_7|NC_013716.1_3146880_3147786_-	PLN03237, PLN03237, DNA topoisomerase 2; Provisional	NA|99aa|down_8|NC_013716.1_3147964_3148261_-	TIGR02498, probable_type_III_secretion_apparatus, type III secretion system protein, SsaH family	NA|74aa|down_9|NC_013716.1_3148267_3148489_-	TIGR02105, Yop_proteins_translocation_protein_F, type III secretion apparatus needle protein
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	12	3203907-3204911	1,11,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	3203936-3203967	NC_013716.1_2794662-2794693	I-E:I-E:I-E	15,16,16	16	TypeI-E	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|447aa|up_9|NC_013716.1_3187796_3189137_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|NC_013716.1_3189157_3190498_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|NC_013716.1_3190585_3191728_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|327aa|up_6|NC_013716.1_3191951_3192932_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|919aa|up_5|NC_013716.1_3193111_3195868_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|433aa|up_4|NC_013716.1_3195925_3197224_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_3|NC_013716.1_3197275_3199510_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_2|NC_013716.1_3199577_3200369_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_1|NC_013716.1_3200592_3202230_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_0|NC_013716.1_3202318_3203617_+	PRK00077, eno, enolase; Provisional	NA|224aa|down_0|NC_013716.1_3204974_3205646_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|463aa|down_1|NC_013716.1_3205681_3207070_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|390aa|down_2|NC_013716.1_3207096_3208266_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|777aa|down_3|NC_013716.1_3208432_3210763_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|122aa|down_4|NC_013716.1_3210769_3211135_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_5|NC_013716.1_3211435_3213235_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_6|NC_013716.1_3213234_3214947_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_7|NC_013716.1_3215046_3215781_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|883aa|down_8|NC_013716.1_3215980_3218629_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_9|NC_013716.1_3219124_3220684_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	13	3224981-3225437	12,3	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Type I-E	TAAGTTCCCCGCGCGAGCGGGGATAGACCGT,AAGTTCCCCGCNCGAGCGGGGATANACCG	31,29	0	0	NA	NA	I-E:I-E	7,7	7	TypeI-E	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA|142aa|down_0|NC_013716.1_3225514_3225940_-	NA|571aa|up_9|NC_013716.1_3213234_3214947_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NC_013716.1_3215046_3215781_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|883aa|up_7|NC_013716.1_3215980_3218629_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|NC_013716.1_3219124_3220684_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NC_013716.1_3220680_3221217_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NC_013716.1_3221230_3222286_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NC_013716.1_3222296_3223043_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NC_013716.1_3223024_3223675_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NC_013716.1_3223671_3224595_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NC_013716.1_3224591_3224876_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|142aa|down_0|NC_013716.1_3225514_3225940_-	NA	NA|94aa|down_1|NC_013716.1_3225962_3226244_+	pfam17274, DUF5339, Family of unknown function (DUF5339)	NA|346aa|down_2|NC_013716.1_3226333_3227371_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_3|NC_013716.1_3227648_3228557_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_4|NC_013716.1_3228566_3229994_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_5|NC_013716.1_3229993_3230599_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_6|NC_013716.1_3230645_3230969_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_7|NC_013716.1_3231153_3231465_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|232aa|down_8|NC_013716.1_3231483_3232179_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_9|NC_013716.1_3232306_3232786_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	14	3768068-3768169	13	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	GTAGGCCCGGTAAGCGGCAGCGCCACCGGGCAA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|753aa|up_9|NC_013716.1_3755294_3757553_-	TIGR01062, DNA_topoisomerase_4_subunit_A, DNA topoisomerase IV, A subunit, proteobacterial	NA|131aa|up_8|NC_013716.1_3757683_3758076_-	COG3111, COG3111, Periplasmic protein with OB-fold [Function unknown]	NA|220aa|up_7|NC_013716.1_3758227_3758887_+	PRK10336, PRK10336, two-component system response regulator QseB	NA|451aa|up_6|NC_013716.1_3758883_3760236_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|194aa|up_5|NC_013716.1_3760341_3760923_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|105aa|up_4|NC_013716.1_3760953_3761268_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|395aa|up_3|NC_013716.1_3761319_3762504_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|397aa|up_2|NC_013716.1_3762679_3763870_-	pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88	NA|607aa|up_1|NC_013716.1_3765194_3767015_-	pfam10022, DUF2264, Uncharacterized protein conserved in bacteria (DUF2264)	NA|284aa|up_0|NC_013716.1_3767179_3768031_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|631aa|down_0|NC_013716.1_3768204_3770097_-	TIGR01055, DNA_topoisomerase_4_subunit_B, DNA topoisomerase IV, B subunit, proteobacterial	NA|194aa|down_1|NC_013716.1_3770125_3770707_-	PRK11071, PRK11071, esterase YqiA; Provisional	NA|276aa|down_2|NC_013716.1_3770706_3771534_-	PRK11148, PRK11148, cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional	NA|141aa|down_3|NC_013716.1_3771558_3771981_-	PRK11039, PRK11039, DUF1249 family protein	NA|211aa|down_4|NC_013716.1_3771977_3772610_-	PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional	NA|494aa|down_5|NC_013716.1_3772818_3774300_+	PRK09465, tolC, outer membrane channel protein; Reviewed	NA|224aa|down_6|NC_013716.1_3774497_3775169_+	PRK11653, PRK11653, DUF1190 family protein	NA|387aa|down_7|NC_013716.1_3775174_3776335_+	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp	NA|266aa|down_8|NC_013716.1_3776366_3777164_-	PRK10628, PRK10628, LigB family dioxygenase; Provisional	NA|258aa|down_9|NC_013716.1_3777295_3778069_+	PRK04201, PRK04201, zinc transporter ZupT; Provisional
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	15	4009071-4009183	14	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	GTTTGCCCGGTGGCGCTATCGCTTACCGGGCCTACGT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA|150aa|down_4|NC_013716.1_4015220_4015670_+	NA|119aa|up_9|NC_013716.1_3995767_3996124_-	PRK10427, PRK10427, PTS fructose-like transporter subunit IIB	NA|293aa|up_8|NC_013716.1_3996125_3997004_-	PRK10076, PRK10076, pyruvate formate lyase II activase; Provisional	NA|766aa|up_7|NC_013716.1_3996969_3999267_-	PRK09983, pflD, putative formate acetyltransferase 2; Provisional	NA|107aa|up_6|NC_013716.1_3999438_3999759_-	COG1445, FrwB, Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]	NA|360aa|up_5|NC_013716.1_3999773_4000853_-	PRK10478, PRK10478, PTS fructose transporter subunit EIIC	NA|834aa|up_4|NC_013716.1_4001160_4003662_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|221aa|up_3|NC_013716.1_4003675_4004338_+	PRK12655, PRK12655, fructose-6-phosphate aldolase; Reviewed	NA|368aa|up_2|NC_013716.1_4004350_4005454_+	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|727aa|up_1|NC_013716.1_4005564_4007745_-	PRK15061, PRK15061, catalase/peroxidase	NA|297aa|up_0|NC_013716.1_4007910_4008801_-	PRK09432, metF, methylenetetrahydrofolate reductase	NA|337aa|down_0|NC_013716.1_4009285_4010296_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|811aa|down_1|NC_013716.1_4010693_4013126_-	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|387aa|down_2|NC_013716.1_4013128_4014289_-	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional	NA|106aa|down_3|NC_013716.1_4014564_4014882_+	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|150aa|down_4|NC_013716.1_4015220_4015670_+	NA	NA|109aa|down_5|NC_013716.1_4015663_4015990_+	pfam07377, DUF1493, Protein of unknown function (DUF1493)	NA|162aa|down_6|NC_013716.1_4016005_4016491_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|71aa|down_7|NC_013716.1_4016559_4016772_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|733aa|down_8|NC_013716.1_4017027_4019226_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|342aa|down_9|NC_013716.1_4019447_4020473_+	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	16	4662616-4662715	15	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	AGGCCCGATAAGCGCAAGCGCCATCGG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA|143aa|up_4|NC_013716.1_4654215_4654644_-,NA	NA|503aa|up_9|NC_013716.1_4647294_4648803_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|109aa|up_8|NC_013716.1_4649000_4649327_+	PRK00162, glpE, thiosulfate sulfurtransferase GlpE	NA|277aa|up_7|NC_013716.1_4649402_4650233_+	PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional	NA|253aa|up_6|NC_013716.1_4650332_4651091_+	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|902aa|up_5|NC_013716.1_4651134_4653840_-	PRK04841, PRK04841, HTH-type transcriptional regulator MalT	NA|143aa|up_4|NC_013716.1_4654215_4654644_-	NA	NA|160aa|up_3|NC_013716.1_4655548_4656028_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|798aa|up_2|NC_013716.1_4656412_4658806_+	PRK14985, PRK14985, maltodextrin phosphorylase; Provisional	NA|696aa|up_1|NC_013716.1_4658815_4660903_+	PRK11052, malQ, 4-alpha-glucanotransferase; Provisional	NA|439aa|up_0|NC_013716.1_4661028_4662345_-	PRK14984, PRK14984, gluconate transporter	NA|192aa|down_0|NC_013716.1_4662733_4663309_-	PRK11190, PRK11190, iron-sulfur cluster biogenesis protein NfuA	NA|228aa|down_1|NC_013716.1_4663367_4664051_-	PRK11595, PRK11595, DNA utilization protein GntX; Provisional	NA|257aa|down_2|NC_013716.1_4664088_4664859_+	PRK10349, PRK10349, pimeloyl-ACP methyl ester esterase BioH	NA|314aa|down_3|NC_013716.1_4664900_4665842_-	PRK09956, PRK09956, ISNCY family transposase	NA|79aa|down_4|NC_013716.1_4666032_4666269_-	PRK15431, PRK15431, [Fe-S]-dependent transcriptional repressor FeoC	NA|776aa|down_5|NC_013716.1_4666278_4668606_-	PRK09554, feoB, Fe(2+) transporter permease subunit FeoB	NA|76aa|down_6|NC_013716.1_4668624_4668852_-	PRK09555, feoA, ferrous iron transporter A	NA|773aa|down_7|NC_013716.1_4669227_4671546_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|158aa|down_8|NC_013716.1_4671632_4672106_-	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|240aa|down_9|NC_013716.1_4672332_4673052_+	PRK09468, ompR, osmolarity response regulator; Provisional
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	17	4938257-4938358	16	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	GTAGGCCGGGCAAGCGAAGCGCCCC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|415aa|up_9|NC_013716.1_4930373_4931618_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|up_8|NC_013716.1_4931706_4932714_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|up_7|NC_013716.1_4933034_4933931_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_6|NC_013716.1_4933921_4934917_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_5|NC_013716.1_4935137_4935662_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_4|NC_013716.1_4935655_4936159_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|98aa|up_3|NC_013716.1_4936145_4936439_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_2|NC_013716.1_4936490_4936934_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_1|NC_013716.1_4936913_4937432_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|213aa|up_0|NC_013716.1_4937560_4938199_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|346aa|down_0|NC_013716.1_4938476_4939514_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_1|NC_013716.1_4939607_4940183_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_2|NC_013716.1_4940192_4940783_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_3|NC_013716.1_4940802_4941198_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|684aa|down_4|NC_013716.1_4941155_4943207_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_5|NC_013716.1_4943271_4944132_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|258aa|down_6|NC_013716.1_4944294_4945068_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|185aa|down_7|NC_013716.1_4946047_4946602_-	pfam07022, Phage_CI_repr, Bacteriophage CI repressor helix-turn-helix domain	NA|77aa|down_8|NC_013716.1_4946778_4947009_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|696aa|down_9|NC_013716.1_4947011_4949099_+	pfam09299, Mu-transpos_C, Mu transposase, C-terminal
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	18	5047151-5047221	17	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	AGCGCCATCCGGCGTAACACAGG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA,NA	NA|95aa|up_9|NC_013716.1_5038461_5038746_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|up_8|NC_013716.1_5038735_5039140_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|up_7|NC_013716.1_5039142_5039448_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_6|NC_013716.1_5039482_5039851_-	pfam06476, DUF1090, Protein of unknown function (DUF1090)	NA|128aa|up_5|NC_013716.1_5039999_5040383_-	PRK10629, PRK10629, EnvZ/OmpR regulon moderator MzrA	NA|221aa|up_4|NC_013716.1_5040386_5041049_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|259aa|up_3|NC_013716.1_5041393_5042170_-	PRK11523, PRK11523, transcriptional regulator ExuR	NA|434aa|up_2|NC_013716.1_5042376_5043678_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|471aa|up_1|NC_013716.1_5044154_5045567_+	pfam02614, UxaC, Glucuronate isomerase	NA|496aa|up_0|NC_013716.1_5045581_5047069_+	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus	NA|185aa|down_0|NC_013716.1_5047236_5047791_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|down_1|NC_013716.1_5047807_5049052_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|down_2|NC_013716.1_5049286_5050252_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|333aa|down_3|NC_013716.1_5050524_5051523_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|168aa|down_4|NC_013716.1_5051593_5052097_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|down_5|NC_013716.1_5052180_5053317_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|673aa|down_6|NC_013716.1_5053453_5055472_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|460aa|down_7|NC_013716.1_5055697_5057077_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NC_013716.1_5057506_5059027_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|522aa|down_9|NC_013716.1_5059294_5060860_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_000027085.1_ASM2708v1	NC_013716	Citrobacter rodentium ICC168, complete genome	19	5275206-5275309	18	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	Orphan	TTAACGCATGGTTGTAGGGCGGATAAGGCGTTTACGCCG	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,RT	NA|440aa|up_9|NC_013716.1_5261317_5262637_+,NA	NA|440aa|up_9|NC_013716.1_5261317_5262637_+	NA	NA|242aa|up_8|NC_013716.1_5262633_5263359_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|524aa|up_7|NC_013716.1_5263947_5265519_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|up_6|NC_013716.1_5265538_5265886_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|217aa|up_5|NC_013716.1_5265885_5266536_-	pfam01527, HTH_Tnp_1, Transposase	NA|443aa|up_4|NC_013716.1_5267205_5268534_-	pfam18134, AGS_C, Adenylyl/Guanylyl and SMODS C-terminal sensor domain	NA|52aa|up_3|NC_013716.1_5269902_5270058_-	pfam13817, DDE_Tnp_IS66_C, IS66 C-terminal element	NA|421aa|up_2|NC_013716.1_5270251_5271514_-	PRK09692, PRK09692, integrase; Provisional	NA|236aa|up_1|NC_013716.1_5271892_5272600_-	COG1811, COG1811, Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]	NA|712aa|up_0|NC_013716.1_5273025_5275161_+	PRK13578, PRK13578, ornithine decarboxylase; Provisional	NA|419aa|down_0|NC_013716.1_5275325_5276582_-	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter	NA|362aa|down_1|NC_013716.1_5276793_5277879_-	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC	NA|91aa|down_2|NC_013716.1_5277978_5278251_-	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|361aa|down_3|NC_013716.1_5278247_5279330_-	PRK10880, PRK10880, adenine DNA glycosylase	NA|240aa|down_4|NC_013716.1_5279492_5280212_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|109aa|down_5|NC_013716.1_5280211_5280538_+	PRK11702, PRK11702, hypothetical protein; Provisional	NA|240aa|down_6|NC_013716.1_5280587_5281307_+	PRK10626, PRK10626, hypothetical protein; Provisional	NA|349aa|down_7|NC_013716.1_5281496_5282543_+	PRK11096, ansB, L-asparaginase II; Provisional	NA|379aa|down_8|NC_013716.1_5282653_5283790_-	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|198aa|down_9|NC_013716.1_5283782_5284376_-	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed
