The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	12782	68921	3043210	tRNA,integrase,transposase	Staphylococcus_phage(20.0%)	52	15889:15905	52807:52823
WP_000884337.1|12782_14069_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000207101.1|14712_15408_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_000628050.1|15404_15734_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
15889:15905	attL	ATAAAAGTAATTCATCA	NA	NA	NA	NA
WP_000186485.1|16095_17064_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_001791031.1|17356_18295_+	YybS family protein	NA	NA	NA	NA	NA
WP_001081643.1|18309_20277_+	cyclic-di-AMP phosphodiesterase GdpP	NA	NA	NA	NA	NA
WP_000864305.1|20273_20720_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_000375652.1|20751_22152_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	7.1e-111
WP_000095328.1|22429_23713_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000101976.1|24902_25604_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000871601.1|25616_27443_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	2.1e-30
WP_001060146.1|27435_28770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001104171.1|28770_29559_+	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_000088649.1|29946_30747_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_000645752.1|30973_33292_+	LPXTG-anchored adenosine synthase AdsA	NA	NA	NA	NA	NA
WP_000704775.1|33659_34139_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_000677987.1|34384_34690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000680579.1|34887_35751_+	hypothetical protein	NA	G9IA57	Pseudomonas_phage	27.8	1.2e-15
WP_000449985.1|37560_38661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058157.1|38653_39025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001015579.1|39021_40665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000093392.1|42622_43108_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_000175892.1|43399_43738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001166716.1|43831_44143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000848380.1|44158_44665_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_000868132.1|45121_46207_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_014532403.1|46203_48096_+|integrase	phage integrase family protein	integrase	NA	NA	NA	NA
WP_001041907.1|48102_48480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000067268.1|48630_49413_+	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_001072201.1|49538_50270_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_001092058.1|50778_51441_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000373151.1|51988_52861_+	HTH domain-containing protein	NA	NA	NA	NA	NA
52807:52823	attR	TGATGAATTACTTTTAT	NA	NA	NA	NA
WP_000065262.1|52917_53208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000397419.1|53223_53712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000717928.1|53846_54374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000941331.1|54436_54853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001070883.1|55319_55541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000759939.1|55690_56257_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_001824952.1|56336_58565_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	26.6	1.8e-44
WP_001105999.1|58611_59286_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_000163428.1|59568_60915_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000425271.1|61214_61622_+	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_000746201.1|61638_61992_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_000010352.1|61988_62669_+	cytochrome c biosynthesis protein	NA	NA	NA	NA	NA
WP_001794630.1|62756_63143_+	mercuric transport protein MerT	NA	NA	NA	NA	NA
WP_000193219.1|63200_64844_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
WP_000790333.1|64925_65576_+	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000377078.1|65770_66286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105988.1|66404_67079_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_169301211.1|67511_67802_-	DUF3021 family protein	NA	NA	NA	NA	NA
WP_001803415.1|67872_68115_-	LytTR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001106055.1|68246_68921_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.3e-126
>prophage 2
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	376498	418996	3043210	portal,plate,tail,head,capsid,terminase,holin,integrase	Staphylococcus_phage(87.1%)	62	376388:376405	419728:419745
376388:376405	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264186.1|376498_377704_-|integrase	site-specific integrase	integrase	Q4ZBP1	Staphylococcus_phage	100.0	8.5e-222
WP_000337826.1|377814_377994_+	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_000392181.1|377973_378906_-	hypothetical protein	NA	A0EX19	Staphylococcus_virus	98.1	4.1e-171
WP_000661437.1|378937_379663_-	PH domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000775187.1|379690_380365_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|380381_380714_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|380977_381172_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001002757.1|381171_381939_+	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000187184.1|381939_382164_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001094939.1|382203_382422_+	hypothetical protein	NA	Q4ZBN1	Staphylococcus_phage	98.6	4.3e-31
WP_001124198.1|382451_382715_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000066021.1|382726_382888_+	DUF1270 family protein	NA	Q4ZBM9	Staphylococcus_phage	100.0	3.8e-21
WP_000291089.1|382979_383240_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_001205732.1|383248_383512_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|383520_385464_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_000180598.1|385465_386386_+	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	99.7	8.6e-166
WP_064135358.1|386466_387084_+	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000934759.1|387084_387555_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_000148333.1|387584_388478_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338528.1|388484_388703_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401969.1|388711_389116_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000111491.1|389500_389758_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000178986.1|389754_390003_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	97.6	1.2e-40
WP_000695762.1|390015_390417_+	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
WP_000979209.1|390413_390761_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000144710.1|390757_391066_+	hypothetical protein	NA	Q4ZD83	Staphylococcus_virus	100.0	6.2e-52
WP_001065026.1|391058_391307_+	DUF1024 family protein	NA	S4V7K0	Staphylococcus_phage	100.0	4.1e-38
WP_000185663.1|391299_391836_+	dUTP diphosphatase	NA	A0A1X9H0S5	Staphylococcus_phage	99.4	7.2e-96
WP_000195821.1|391872_392073_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	77.6	2.7e-16
WP_000608279.1|392171_392408_+	hypothetical protein	NA	A0A0N7E0U3	Staphylococcus_phage	100.0	1.3e-36
WP_000591891.1|392400_392574_+	transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
WP_000989954.1|392574_392940_+	hypothetical protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
WP_000989960.1|392940_393087_+	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
WP_000162703.1|393110_393551_+	RinA family phage transcriptional activator	NA	Q4ZBJ7	Staphylococcus_phage	100.0	4.1e-73
WP_000594082.1|393861_394356_+|terminase	terminase	terminase	R4IH30	Staphylococcus_phage	100.0	1.1e-74
WP_001606760.1|394348_395557_+|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	100.0	6.1e-236
WP_001159668.1|395510_396989_+|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	99.6	3.3e-284
WP_014532414.1|396927_397911_+|head	phage head morphogenesis protein	head	A0A0N7E0U6	Staphylococcus_phage	97.4	6.2e-170
WP_000346033.1|397912_398119_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_000366932.1|398223_398820_+	phage scaffolding protein	NA	R4IG73	Staphylococcus_phage	100.0	5.6e-73
WP_001135558.1|398840_399665_+|capsid	N4-gp56 family major capsid protein	capsid	R4IH32	Staphylococcus_phage	100.0	5.6e-148
WP_000278799.1|399681_400008_+	Rho termination factor N-terminal domain-containing protein	NA	A0A0E3TAL3	Staphylococcus_phage	100.0	4.3e-51
WP_000338935.1|400007_400322_+|head,tail	phage head-tail connector protein	head,tail	R4IFL8	Staphylococcus_phage	100.0	4.0e-54
WP_000482987.1|400314_400650_+|head	phage head closure protein	head	A0A2H4PQL0	Staphylococcus_phage	98.2	5.7e-59
WP_001151335.1|400636_401050_+	HK97 gp10 family phage protein	NA	R4IG77	Staphylococcus_phage	100.0	2.0e-77
WP_000270196.1|401062_401500_+	DUF3168 domain-containing protein	NA	A0A0E3T9M9	Staphylococcus_phage	100.0	2.1e-77
WP_000046067.1|401486_402047_+	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000141086.1|402108_402603_+	hypothetical protein	NA	R4IFM1	Staphylococcus_phage	99.4	1.2e-86
WP_001580347.1|402623_402965_+	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	100.0	3.5e-56
WP_000414234.1|402967_405937_+|terminase	terminase	terminase	R4IG82	Staphylococcus_phage	99.7	1.5e-280
WP_000560193.1|405951_406887_+|tail	phage tail family protein	tail	A7YGW1	Staphylococcus_virus	98.7	4.5e-178
WP_001144702.1|406897_408781_+|tail	phage tail protein	tail	A0A0H4ITY6	Staphylococcus_phage	99.2	0.0e+00
WP_000323252.1|408793_410692_+	hypothetical protein	NA	Q4ZBQ2	Staphylococcus_phage	99.1	0.0e+00
WP_000259636.1|410691_412515_+|plate	BppU family phage baseplate upper protein	plate	A0A0E3XBS0	Staphylococcus_phage	100.0	0.0e+00
WP_000869363.1|412514_412892_+	DUF2977 domain-containing protein	NA	A0A2H4PQW4	Staphylococcus_phage	99.2	6.9e-61
WP_015990323.1|412901_413075_+	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_000466769.1|413115_413415_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_000524040.1|413551_415426_+	glucosaminidase domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	100.0	0.0e+00
WP_000276640.1|415438_416677_+|plate	BppU family phage baseplate upper protein	plate	Q4ZB96	Staphylococcus_virus	97.6	8.8e-206
WP_000387945.1|416681_417077_+	hypothetical protein	NA	A0A0H4IPB8	Staphylococcus_phage	97.7	3.3e-66
WP_000354132.1|417132_417570_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_001148131.1|417550_418996_+	SH3 domain-containing protein	NA	Q08JW9	Staphylococcus_phage	99.6	5.3e-295
419728:419745	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 3
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	483706	496889	3043210	integrase	Streptococcus_phage(66.67%)	11	479614:479628	495542:495556
479614:479628	attL	GATTCATCATTTGAC	NA	NA	NA	NA
WP_000264071.1|483706_485173_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424966.1|485197_486739_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000237797.1|486806_488000_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000633907.1|488026_488227_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845143.1|488724_488955_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_001227350.1|489904_490258_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_032506803.1|490315_490504_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
WP_000691737.1|490601_492521_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
WP_001791010.1|492536_492653_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000768373.1|493842_494865_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
WP_000192392.1|494861_496889_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.5	2.3e-195
495542:495556	attR	GATTCATCATTTGAC	NA	NA	NA	NA
>prophage 4
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	506146	514313	3043210		Streptococcus_phage(85.71%)	10	NA	NA
WP_000870467.1|506146_506641_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.4	2.8e-54
WP_000675717.1|506707_507487_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|507528_507750_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055376.1|507746_508037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426689.1|508033_509218_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
WP_001130245.1|509399_510803_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.7	7.5e-177
WP_000185761.1|510824_511598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234191.1|511607_511985_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000421279.1|512005_512320_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_000181735.1|512519_514313_-	ATP-dependent helicase	NA	E3T5J8	Cafeteria_roenbergensis_virus	23.8	6.9e-26
>prophage 5
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	836532	844352	3043210		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|836532_837588_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149342.1|837587_838274_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|838248_838722_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|839063_839504_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|839783_840368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|840466_841180_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941338.1|841183_841603_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	3.7e-07
WP_000446724.1|841604_842273_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|842623_843217_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|843200_844352_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 6
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	856324	871111	3043210		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|856324_857383_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|857733_858276_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|858955_859873_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|859963_860065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|860142_861648_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|861988_862489_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|862508_863375_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|864175_864574_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|864536_866642_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|866759_867731_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|868244_868400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|868438_869410_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|869396_870353_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|870349_871111_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 7
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	949575	964383	3043210	integrase,terminase,coat	Staphylococcus_phage(89.47%)	23	952110:952128	966672:966690
WP_000571218.1|949575_950601_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|950593_951289_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|951306_952128_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
952110:952128	attL	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000264182.1|952271_953492_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	3.5e-98
WP_000733773.1|953579_954308_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	2.4e-22
WP_001033317.1|954331_955060_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	7.9e-29
WP_000142630.1|955234_955969_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
WP_001063624.1|956118_956331_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	98.6	3.4e-33
WP_001138298.1|956331_956604_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	100.0	3.4e-46
WP_000784885.1|956615_956762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058492.1|956754_956964_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
WP_001103946.1|956966_957260_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	61.8	1.8e-24
WP_001002691.1|957347_958217_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	96.9	4.2e-162
WP_000432707.1|958233_959691_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.7	1.4e-279
WP_001039172.1|959992_960355_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	96.7	2.9e-64
WP_000998180.1|960356_960641_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	1.6e-49
WP_001019783.1|960637_961279_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.8	2.7e-113
WP_001190616.1|961727_962069_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	1.6e-56
WP_000846279.1|962080_962659_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	40.0	3.3e-30
WP_000448776.1|962676_962895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771365.1|962945_963473_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.6e-87
WP_025174984.1|963604_963817_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
WP_001281786.1|963813_964383_+|terminase	terminase small subunit	terminase	A0A1W6JQF0	Staphylococcus_phage	98.4	1.2e-101
966672:966690	attR	AGTTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 8
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	1130272	1138745	3043210		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1130272_1130755_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1130741_1131866_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1131869_1132574_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1132573_1132837_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1132838_1133510_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1133502_1135692_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1135670_1137155_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1137147_1138176_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1138178_1138745_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 9
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	1396937	1402978	3043210	capsid,transposase	Staphylococcus_phage(83.33%)	9	NA	NA
WP_001789891.1|1396937_1397135_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_001789892.1|1397822_1398047_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002340.1|1398340_1398547_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001788716.1|1399247_1399358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1399785_1399971_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477492.1|1400482_1400587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1400715_1400967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170964240.1|1401108_1401597_+|capsid	minor capsid protein	capsid	A0A2H4IYR8	uncultured_Caudovirales_phage	76.7	2.5e-23
WP_000195429.1|1401805_1402978_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 10
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	1680294	1688606	3043210	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1680294_1681080_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1681205_1682096_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1682105_1683452_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1683565_1684666_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1684668_1685346_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1685476_1686583_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1686806_1688606_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 11
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	1759077	1768120	3043210	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1759077_1759596_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1759617_1761891_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1762093_1764373_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1764647_1764908_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1764926_1766066_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019171.1|1766088_1767114_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1767115_1768120_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 12
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	1900306	1981048	3043210	tRNA,protease,transposase	Staphylococcus_phage(94.92%)	75	NA	NA
WP_001050552.1|1900306_1906867_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1907192_1907504_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001549041.1|1907525_1909943_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1910230_1911412_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1911521_1912475_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1912471_1913035_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1913154_1913556_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000195429.1|1913920_1915093_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000266096.1|1916466_1917294_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1917296_1917416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1917527_1918529_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1918650_1919115_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159024.1|1919127_1920309_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_000493893.1|1920319_1920952_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	1.9e-111
WP_000077344.1|1920958_1922002_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261678.1|1922482_1923985_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1924507_1924822_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1924821_1926114_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1926131_1926527_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1926820_1927675_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1927950_1928175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1928373_1928844_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1928956_1929400_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1929386_1929830_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1930125_1930761_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1931200_1931914_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1932173_1932476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1932731_1933097_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1933093_1933447_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453322.1|1935510_1936362_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	97.8	7.0e-154
WP_000366154.1|1936573_1937482_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1937606_1938800_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1939170_1940763_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1940898_1941384_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1941758_1942505_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1942509_1942983_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1943048_1943306_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1943302_1944304_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1944308_1945787_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1945945_1946401_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1946703_1947354_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1947434_1948430_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1948505_1949132_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1949172_1949517_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1949614_1950166_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1950383_1951025_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1951138_1951324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1951325_1951502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1951512_1951896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1952499_1952643_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1952845_1952941_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1953063_1953165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037045.1|1953512_1953890_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000072576.1|1960704_1961904_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000028659.1|1961896_1963453_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
WP_001791797.1|1963616_1963751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1963815_1964535_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1964685_1965402_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1965503_1965611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1965559_1966279_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1966399_1967119_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1967176_1967899_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1968023_1968731_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1969694_1970261_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1970734_1971433_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1971429_1972191_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1972187_1972880_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1972902_1974276_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1974285_1974804_-	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1974819_1976064_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001803290.1|1976056_1977799_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	54.1	2.5e-259
WP_000416756.1|1977863_1978007_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1978743_1978887_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1979127_1980111_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473590.1|1980112_1981048_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	5.1e-174
>prophage 13
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	2064835	2164286	3043210	portal,tail,head,capsid,terminase,tRNA,protease,holin,integrase	Staphylococcus_phage(91.03%)	116	2128163:2128180	2154210:2154227
WP_000545370.1|2064835_2066263_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027928.1|2066275_2067733_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2067734_2068037_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957012.1|2068403_2069942_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2070030_2071230_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2071242_2073246_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2073249_2075442_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272068.1|2075438_2076131_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2076302_2076605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2076713_2078009_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|2078869_2080036_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2080066_2080393_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2080684_2080858_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2080838_2081441_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2081711_2082533_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2082525_2083995_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2084178_2085255_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177818.1|2085274_2086069_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2086140_2086248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2086258_2087821_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2088025_2089123_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2089494_2090055_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2090107_2091037_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2091231_2091405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2091456_2092836_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2092955_2093984_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2094252_2094654_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2095226_2095400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2095850_2096891_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713060.1|2096947_2097790_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2097786_2098344_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2098403_2098928_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2099048_2099612_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2099677_2100418_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2100417_2101290_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2101286_2101967_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2101967_2102864_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2102860_2103241_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2103504_2103681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2103923_2104022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2104221_2105508_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|2106132_2107887_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2108844_2109024_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2109334_2109595_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2109647_2109998_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000920041.1|2111494_2111986_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|2112176_2112932_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2112943_2113198_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_072482930.1|2113409_2113586_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	3.8e-22
WP_000750412.1|2113694_2114468_-	staphylococcal enterotoxin type A	NA	A0A1X9H080	Staphylococcus_phage	100.0	1.1e-145
WP_000340977.1|2114840_2115215_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262621.1|2115270_2115558_-	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_001000059.1|2115603_2115756_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	98.0	1.7e-18
WP_000582173.1|2115748_2119531_-	hypothetical protein	NA	A0A1X9H096	Staphylococcus_phage	99.7	0.0e+00
WP_000567408.1|2119546_2121031_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001795393.1|2121027_2125557_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	100.0	0.0e+00
WP_001096355.1|2125801_2126152_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_072050172.1|2126201_2126426_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	98.6	8.8e-32
WP_000268741.1|2126467_2127112_-|tail	phage tail protein	tail	W5R9H4	Staphylococcus_phage	100.0	6.5e-120
WP_000565498.1|2127112_2127520_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|2127516_2127921_-	HK97 gp10 family phage protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|2127917_2128280_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2128163:2128180	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2128263_2128548_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2128537_2128822_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|2128841_2129987_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000861914.1|2130010_2130748_-|protease	Clp protease ClpP	protease	C8CH20	Staphylococcus_phage	100.0	2.3e-129
WP_000025274.1|2130731_2131919_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2131934_2133596_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2133592_2133937_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2134067_2134367_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590126.1|2134598_2135015_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	100.0	2.9e-76
WP_000265039.1|2135042_2135243_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	98.5	1.4e-28
WP_000595265.1|2135242_2135392_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2135388_2135775_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195820.1|2135771_2135978_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_001066444.1|2136014_2136551_-	dUTP diphosphatase	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
WP_000197967.1|2136543_2136954_-	hypothetical protein	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
WP_001065024.1|2136950_2137436_-	DUF1024 family protein	NA	A0A1X9H0D4	Staphylococcus_phage	93.4	3.6e-70
WP_001105604.1|2137428_2137713_-	hypothetical protein	NA	S4V9L1	Staphylococcus_phage	97.9	2.1e-46
WP_000982711.1|2137709_2138159_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	99.3	2.1e-80
WP_000178986.1|2138223_2138472_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	97.6	1.2e-40
WP_000111491.1|2138468_2138726_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000401969.1|2139110_2139515_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000338528.1|2139523_2139742_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148333.1|2139748_2140642_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934759.1|2140671_2141142_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_064135358.1|2141142_2141760_-	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000180598.1|2141840_2142761_-	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	99.7	8.6e-166
WP_000700555.1|2142762_2144706_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2144714_2144978_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_001814567.1|2144986_2145247_-	DUF1108 family protein	NA	D2JGJ8	Staphylococcus_phage	100.0	5.8e-43
WP_000138304.1|2145227_2145557_-	hypothetical protein	NA	D2JGJ7	Staphylococcus_phage	100.0	1.4e-33
WP_000066017.1|2145646_2145808_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_001120197.1|2145804_2146125_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|2146183_2146816_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|2146830_2146971_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|2147001_2147199_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148653.1|2147214_2147964_-	phage antirepressor KilAC domain-containing protein	NA	O80074	Staphylococcus_phage	100.0	2.0e-136
WP_000180411.1|2148014_2148344_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2148332_2148548_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2148563_2148827_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2148823_2148997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2148959_2149673_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2149688_2150621_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2150626_2150968_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|2151171_2151354_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2151453_2151918_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|2151976_2153014_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595324.1|2154132_2155149_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2154210:2154227	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2155170_2156226_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|2156660_2157884_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000825510.1|2159160_2160072_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2160232_2161540_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2162392_2162836_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2163000_2163378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2163695_2164286_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
>prophage 14
NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3043210	2179157	2312303	3043210	tail,terminase,holin,integrase,transposase	Staphylococcus_phage(93.75%)	149	2198978:2198997	2307245:2307264
WP_001052278.1|2179157_2180408_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	7.6e-40
WP_000581077.1|2180614_2180839_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001260014.1|2181758_2183297_-	recombinase family protein	NA	A0A0N9RZT8	Staphylococcus_phage	100.0	5.3e-277
WP_001281071.1|2183286_2183868_-	DNA-binding protein	NA	A0A0N9SK69	Staphylococcus_phage	97.9	1.6e-101
WP_001130902.1|2184069_2184663_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N7GFG7	Staphylococcus_phage	100.0	7.9e-112
WP_001083475.1|2184646_2185039_-	hypothetical protein	NA	A0A0N9RRM7	Staphylococcus_phage	96.9	2.0e-63
WP_000487602.1|2185040_2185787_-	NTP pyrophosphohydrolase	NA	A0A0N9SIY2	Staphylococcus_phage	88.7	5.3e-121
WP_000414358.1|2185799_2186039_-	hypothetical protein	NA	A0A0N9S8B1	Staphylococcus_phage	94.9	8.2e-36
WP_001006074.1|2186054_2186303_-	thioredoxin family protein	NA	A0A0N9SGY3	Staphylococcus_phage	98.8	4.0e-41
WP_000602136.1|2186343_2186946_-	AAA family ATPase	NA	A0A0N9RTZ3	Staphylococcus_phage	99.0	9.8e-110
WP_000196388.1|2186973_2187996_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0N9SK77	Staphylococcus_phage	99.7	4.3e-198
WP_071813268.1|2188040_2188397_-	ribonucleoside-diphosphate reductase	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	60.2	5.9e-38
WP_000049477.1|2188710_2191620_-	intein-containing class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0N7GFG8	Staphylococcus_phage	99.4	0.0e+00
WP_000509886.1|2191641_2192088_-	hypothetical protein	NA	A0A0N9STF9	Staphylococcus_phage	93.2	5.1e-71
WP_001807395.1|2192087_2192501_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A0N9RZU5	Staphylococcus_phage	97.8	8.9e-70
WP_000992381.1|2192530_2192683_-	hypothetical protein	NA	A0A0N9SK94	Staphylococcus_phage	98.0	4.7e-21
WP_001145748.1|2192701_2193403_-	hypothetical protein	NA	A0A0N9RRN5	Staphylococcus_phage	96.6	1.8e-123
WP_000389908.1|2193414_2193924_-	siphovirus Gp157 family protein	NA	A0A0N9SIY9	Staphylococcus_phage	97.0	7.3e-82
WP_000729421.1|2194053_2194656_-	hypothetical protein	NA	A0A0N9S8C0	Staphylococcus_phage	89.2	1.8e-55
WP_000824898.1|2194655_2194886_-	hypothetical protein	NA	A0A0N9SGZ7	Staphylococcus_phage	100.0	1.8e-32
WP_000356944.1|2194899_2195082_-	hypothetical protein	NA	A0A0N7GFG9	Staphylococcus_phage	100.0	3.1e-27
WP_000792728.1|2195084_2195438_-	hypothetical protein	NA	A0A0N9RU04	Staphylococcus_phage	100.0	1.2e-59
WP_000598580.1|2195470_2196469_-	DNA cytosine methyltransferase	NA	A0A0N9SK84	Staphylococcus_phage	99.7	3.1e-193
WP_001108802.1|2196483_2197170_-	methyltransferase domain-containing protein	NA	A0A0N9SHZ9	Staphylococcus_phage	96.1	4.0e-123
WP_000460098.1|2197159_2197351_-	hypothetical protein	NA	A0A0N9STH2	Staphylococcus_phage	96.8	5.2e-33
WP_000416626.1|2197343_2197955_-	nucleoside 2-deoxyribosyltransferase	NA	A0A0N9RZV9	Staphylococcus_phage	97.5	4.9e-109
WP_000404790.1|2197917_2198148_-	hypothetical protein	NA	A0A0N9SKA8	Staphylococcus_phage	96.6	8.2e-25
WP_000865652.1|2198147_2198399_-	hypothetical protein	NA	A0A0N9RRP5	Staphylococcus_phage	100.0	3.8e-39
WP_000937287.1|2198421_2198727_-	hypothetical protein	NA	A0A0N7GFH0	Staphylococcus_phage	100.0	1.8e-51
WP_001031085.1|2198707_2198995_-	hypothetical protein	NA	A0A0N9SIZ8	Staphylococcus_phage	92.6	2.3e-40
2198978:2198997	attL	ATCTTTTTCTTTATTCAATT	NA	NA	NA	NA
WP_000041332.1|2198987_2199254_-	hypothetical protein	NA	A0A0N9S8D1	Staphylococcus_phage	97.7	4.3e-41
WP_000119719.1|2199264_2199438_-	hypothetical protein	NA	A0A0N9SH07	Staphylococcus_phage	100.0	8.9e-24
WP_001098622.1|2199553_2199937_-	DUF3139 domain-containing protein	NA	A0A0N9RU12	Staphylococcus_phage	94.7	2.6e-47
WP_001157078.1|2200023_2201322_-	ATP-dependent DNA ligase	NA	A0A0N9SK95	Staphylococcus_phage	98.1	2.6e-240
WP_000866402.1|2201331_2201646_-	hypothetical protein	NA	A0A0N9SI08	Staphylococcus_phage	81.7	4.7e-39
WP_001215077.1|2201784_2202165_-	hypothetical protein	NA	A0A0N9STI1	Staphylococcus_phage	96.0	8.8e-48
WP_000350441.1|2202277_2204764_-	hypothetical protein	NA	A0A0N7GFH1	Staphylococcus_phage	99.5	0.0e+00
WP_000335153.1|2205108_2206545_-	PHP domain-containing protein	NA	A0A0N9SKC7	Staphylococcus_phage	98.3	2.7e-275
WP_000154133.1|2207100_2207595_+	hypothetical protein	NA	A0A0N9SJ02	Staphylococcus_phage	96.4	1.0e-64
WP_000195429.1|2208221_2209394_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001028141.1|2209530_2210970_-	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A0N9SKF6	Staphylococcus_phage	100.0	8.5e-285
WP_000393259.1|2210970_2211363_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|2211419_2212592_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_072387101.1|2212984_2213392_-	WYL domain-containing protein	NA	A0A1B0RXM3	Streptococcus_phage	98.3	1.1e-59
WP_001079938.1|2213364_2213937_-	HTH domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
WP_001096887.1|2214212_2215007_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_002505594.1|2215514_2215766_-	hypothetical protein	NA	A0A1B0RXL7	Streptococcus_phage	98.7	2.5e-27
WP_001043218.1|2216612_2217335_-	hypothetical protein	NA	A0A0N7GFH2	Staphylococcus_phage	98.3	1.4e-89
WP_000686449.1|2217443_2218244_-	metallophosphoesterase	NA	A0A0N9SKA2	Staphylococcus_phage	100.0	4.0e-151
WP_000280790.1|2218247_2218742_-	hypothetical protein	NA	A0A0N9SI15	Staphylococcus_phage	98.8	5.2e-85
WP_000755772.1|2218798_2219068_-	hypothetical protein	NA	A0A0N9STI7	Staphylococcus_phage	100.0	6.9e-39
WP_032605691.1|2219051_2219243_-	hypothetical protein	NA	A0A0N9RZX7	Staphylococcus_phage	82.5	8.6e-20
WP_001179607.1|2219544_2219940_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	90.1	6.7e-59
WP_000258939.1|2219939_2220170_-	addiction module antitoxin	NA	A0A0N9RRQ9	Staphylococcus_phage	85.5	6.5e-30
WP_000639078.1|2220345_2220867_-	metallophosphoesterase	NA	A0A0N9SJ06	Staphylococcus_phage	94.2	1.9e-93
WP_000411528.1|2220866_2221517_-	hypothetical protein	NA	A0A0N7GFH3	Staphylococcus_phage	96.3	3.5e-113
WP_001807410.1|2221516_2221834_-	hypothetical protein	NA	A0A0N9S8E9	Staphylococcus_phage	82.7	1.2e-42
WP_000197304.1|2221826_2222552_-	metallophosphoesterase	NA	A0A0N9SH20	Staphylococcus_phage	95.9	4.8e-135
WP_000829423.1|2222551_2222773_-	hypothetical protein	NA	A0A0N9RU28	Staphylococcus_phage	95.9	5.5e-34
WP_000063384.1|2222792_2222969_-	hypothetical protein	NA	A0A0N9SKB9	Staphylococcus_phage	89.7	3.8e-22
WP_000858632.1|2222961_2223504_-	hypothetical protein	NA	A0A0N9SI25	Staphylococcus_phage	97.2	7.2e-96
WP_000691100.1|2223518_2223791_-	hypothetical protein	NA	A0A0N9STJ5	Staphylococcus_phage	96.7	6.7e-42
WP_000792995.1|2223816_2223972_-	transcriptional regulator	NA	A0A0N9RZY5	Staphylococcus_phage	98.0	2.2e-18
WP_000312832.1|2224085_2224253_-	hypothetical protein	NA	A0A0N7GFH4	Staphylococcus_phage	98.2	3.0e-24
WP_001187008.1|2224268_2224454_-	hypothetical protein	NA	A0A0N9SKE7	Staphylococcus_phage	100.0	1.5e-24
WP_000401832.1|2224438_2224618_-	hypothetical protein	NA	A0A0N9RRR6	Staphylococcus_phage	91.5	1.1e-21
WP_000833764.1|2224631_2225114_-	hypothetical protein	NA	A0A0N9SJ15	Staphylococcus_phage	94.3	8.8e-69
WP_000924986.1|2225115_2225304_-	Lar family restriction alleviation protein	NA	A0A0N9S8F9	Staphylococcus_phage	95.2	4.5e-29
WP_000867237.1|2225309_2225501_-	hypothetical protein	NA	A0A0N9SH33	Staphylococcus_phage	88.0	6.2e-18
WP_000742009.1|2225497_2225725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000403510.1|2225729_2225996_-	hypothetical protein	NA	A0A0N9RU37	Staphylococcus_phage	95.5	3.6e-40
WP_000800820.1|2225985_2226189_-	hypothetical protein	NA	A0A1W6JP82	Staphylococcus_phage	72.3	9.2e-20
WP_001041170.1|2226207_2226459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000042824.1|2226732_2226966_-	hypothetical protein	NA	A0A0N7GFH5	Staphylococcus_phage	97.4	2.6e-34
WP_000359470.1|2226987_2227212_-	hypothetical protein	NA	A0A0N9SI40	Staphylococcus_phage	98.6	5.7e-31
WP_000862563.1|2227217_2227565_-	thermonuclease family protein	NA	A0A0N9STK3	Staphylococcus_phage	100.0	4.4e-62
WP_000937215.1|2227561_2227972_-	hypothetical protein	NA	A0A0N9RZZ6	Staphylococcus_phage	97.1	1.1e-72
WP_000312937.1|2228011_2228275_-	hypothetical protein	NA	A0A0N9SKF2	Staphylococcus_phage	100.0	6.9e-44
WP_000239839.1|2228277_2228649_-	hypothetical protein	NA	A0A2H4JFL4	uncultured_Caudovirales_phage	38.7	3.9e-16
WP_048666632.1|2228651_2228960_-	hypothetical protein	NA	A0A0N9RRS4	Staphylococcus_phage	85.3	1.3e-41
WP_000022947.1|2229252_2229528_-	hypothetical protein	NA	A0A0N7GFH6	Staphylococcus_phage	92.3	2.0e-41
WP_000404899.1|2229540_2229738_-	hypothetical protein	NA	A0A0N9SH39	Staphylococcus_phage	92.3	3.2e-25
WP_000542668.1|2229748_2230786_-	hypothetical protein	NA	A0A0N9RU46	Staphylococcus_phage	97.7	8.8e-191
WP_000389289.1|2231042_2231780_-	ribonuclease Z	NA	A0A0N9RZK9	Staphylococcus_phage	99.6	7.0e-134
WP_000865239.1|2231973_2233740_-	single-stranded DNA-binding protein	NA	A0A0N9SK20	Staphylococcus_phage	99.7	0.0e+00
WP_000459730.1|2233742_2234855_-	hypothetical protein	NA	A0A0N9RRG7	Staphylococcus_phage	99.7	1.8e-218
WP_001048214.1|2234871_2236404_-	helicase DnaB	NA	A0A0N9SIU7	Staphylococcus_phage	99.0	2.4e-293
WP_001807409.1|2236425_2236944_-	hypothetical protein	NA	A0A0N9S850	Staphylococcus_phage	99.4	1.8e-91
WP_000050755.1|2237020_2237989_-	ATP-binding protein	NA	A0A0N9SGS5	Staphylococcus_phage	99.4	1.0e-180
WP_000852323.1|2238111_2239071_-	hypothetical protein	NA	A0A0N7GFF9	Staphylococcus_phage	100.0	6.7e-169
WP_000668931.1|2239114_2239795_-	hypothetical protein	NA	A0A0N9RTS7	Staphylococcus_phage	100.0	2.0e-127
WP_000364656.1|2239812_2240301_-	hypothetical protein	NA	A0A0N9SK25	Staphylococcus_phage	99.4	2.3e-53
WP_000035084.1|2240316_2240565_-	hypothetical protein	NA	A0A0N9SHT9	Staphylococcus_phage	97.6	1.7e-39
WP_001110387.1|2240723_2241728_-	hypothetical protein	NA	A0A0N9ST56	Staphylococcus_phage	99.4	1.0e-183
WP_001030860.1|2241739_2243020_-	hypothetical protein	NA	A0A0N9RZM2	Staphylococcus_phage	99.8	1.1e-235
WP_000993078.1|2243318_2244362_-|integrase	site-specific integrase	integrase	A0A0N9SK33	Staphylococcus_phage	98.6	8.0e-192
WP_000759940.1|2245053_2245482_-	hypothetical protein	NA	A0A0N9RRH5	Staphylococcus_phage	98.6	9.5e-75
WP_000725702.1|2245559_2246081_-	hypothetical protein	NA	A0A0N7GFG0	Staphylococcus_phage	98.3	1.7e-89
WP_000228097.1|2246080_2246344_-	hypothetical protein	NA	A0A0N9SIV3	Staphylococcus_phage	89.7	4.3e-38
WP_000195429.1|2246513_2247686_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001825093.1|2247712_2247865_-	hypothetical protein	NA	A0A0N9SIV3	Staphylococcus_phage	95.3	1.3e-15
WP_000997332.1|2247978_2248659_-	hypothetical protein	NA	A0A0N9S858	Staphylococcus_phage	93.4	8.5e-118
WP_000688801.1|2248754_2249078_-	hypothetical protein	NA	A0A0N9RTT7	Staphylococcus_phage	92.5	1.7e-52
WP_000793800.1|2249125_2249785_-	antirestriction protein ArdA	NA	A0A0N9SK30	Staphylococcus_phage	93.2	2.2e-115
WP_000931951.1|2249939_2250329_-	hypothetical protein	NA	A0A0N9SHU5	Staphylococcus_phage	93.0	1.3e-62
WP_000353835.1|2250465_2250726_-	hypothetical protein	NA	A0A0N9ST70	Staphylococcus_phage	98.8	3.5e-40
WP_032605705.1|2250800_2251016_-	hypothetical protein	NA	A0A0N7GFG1	Staphylococcus_phage	94.4	2.2e-32
WP_000424936.1|2251467_2251752_-	hypothetical protein	NA	A0A0N9SK40	Staphylococcus_phage	96.8	1.2e-44
WP_001003199.1|2251797_2252076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000622391.1|2253749_2254007_-	hypothetical protein	NA	A0A0N9RRI7	Staphylococcus_phage	95.0	4.3e-14
WP_000391470.1|2255871_2256747_-	hypothetical protein	NA	A0A0N9SIV7	Staphylococcus_phage	99.7	6.3e-166
WP_000409961.1|2256782_2259068_-	AAA family ATPase	NA	A0A0N9S864	Staphylococcus_phage	100.0	0.0e+00
WP_000587450.1|2259203_2260700_+	hypothetical protein	NA	A0A0N9SGU3	Staphylococcus_phage	98.6	8.3e-267
WP_000163487.1|2260958_2261288_+	HU family DNA-binding protein	NA	A0A0N9RTU9	Staphylococcus_phage	95.4	8.1e-50
WP_000057341.1|2261313_2261499_+	YonK family protein	NA	A0A0N7GFG2	Staphylococcus_phage	100.0	1.7e-25
WP_000055837.1|2261507_2262692_+	hypothetical protein	NA	A0A0N9SK37	Staphylococcus_phage	97.5	4.8e-217
WP_001007716.1|2264390_2265275_+	hypothetical protein	NA	A0A0N9SHV5	Staphylococcus_phage	100.0	4.5e-172
WP_000033345.1|2265267_2267067_+|terminase	terminase	terminase	A0A0N9RZP6	Staphylococcus_phage	99.7	2.0e-206
WP_000389594.1|2267084_2268647_+	hypothetical protein	NA	A0A0N9SK48	Staphylococcus_phage	100.0	6.6e-299
WP_001043654.1|2268639_2270019_+	hypothetical protein	NA	A0A0N9RRJ7	Staphylococcus_phage	97.8	4.1e-244
WP_001096464.1|2270046_2270487_+	hypothetical protein	NA	A0A0N9SIW4	Staphylococcus_phage	98.6	3.0e-76
WP_001123863.1|2270526_2271528_+	hypothetical protein	NA	A0A0N9S885	Staphylococcus_phage	99.5	5.6e-110
WP_000985467.1|2271602_2272154_+	hypothetical protein	NA	A0A0N9SGV3	Staphylococcus_phage	100.0	1.5e-80
WP_000134539.1|2272171_2272606_+	hypothetical protein	NA	A0A0N9RTW0	Staphylococcus_phage	100.0	3.5e-69
WP_001086334.1|2272595_2272913_+	hypothetical protein	NA	A0A0N9SK47	Staphylococcus_phage	100.0	2.6e-53
WP_000384370.1|2272916_2273582_+	hypothetical protein	NA	A0A0N9SHW2	Staphylococcus_phage	99.5	3.8e-123
WP_001177112.1|2273571_2274093_+	hypothetical protein	NA	A0A0N9ST98	Staphylococcus_phage	100.0	2.0e-95
WP_000391855.1|2274098_2274971_+	hypothetical protein	NA	A0A0N9RZR7	Staphylococcus_phage	100.0	1.5e-159
WP_001131910.1|2275009_2275801_+	hypothetical protein	NA	A0A0N7GFG4	Staphylococcus_phage	97.7	8.6e-138
WP_000700062.1|2275884_2276442_+	hypothetical protein	NA	A0A0N9SK55	Staphylococcus_phage	100.0	2.7e-98
WP_001135527.1|2276441_2276915_+	hypothetical protein	NA	A0A0N9RRK6	Staphylococcus_phage	98.1	2.5e-84
WP_000963689.1|2276930_2277947_+|integrase	site-specific integrase	integrase	A0A0N9SIX3	Staphylococcus_phage	99.4	2.3e-196
WP_000135455.1|2278043_2286317_+|tail	phage tail tape measure protein	tail	A0A0N9S894	Staphylococcus_phage	99.8	0.0e+00
WP_001112868.1|2286338_2288420_+	hypothetical protein	NA	A0A0N9SGW2	Staphylococcus_phage	99.3	0.0e+00
WP_000174342.1|2288480_2296682_+	hypothetical protein	NA	A0A0N9RTX0	Staphylococcus_phage	89.9	0.0e+00
WP_000402626.1|2296684_2297059_+	hypothetical protein	NA	A0A0N9SK58	Staphylococcus_phage	87.9	8.6e-56
WP_001004732.1|2297051_2297219_+	hypothetical protein	NA	A0A0N7GFG5	Staphylococcus_phage	96.4	1.5e-20
WP_001807370.1|2297260_2299930_+	hypothetical protein	NA	A0A0N9SHX2	Staphylococcus_phage	99.8	0.0e+00
WP_000237132.1|2299973_2300438_+	hypothetical protein	NA	A0A0N9STA8	Staphylococcus_phage	96.2	7.4e-65
WP_000426834.1|2300419_2300932_+	hypothetical protein	NA	A0A0N9RZS7	Staphylococcus_phage	85.3	7.9e-44
WP_000593050.1|2300953_2301283_+|holin	phage holin	holin	A0A0N9SK62	Staphylococcus_phage	96.3	1.0e-52
WP_001253875.1|2301334_2302996_+	hypothetical protein	NA	A0A0N9RRL9	Staphylococcus_phage	91.3	1.9e-115
WP_000991542.1|2302995_2303523_+	hypothetical protein	NA	A1BU75	Staphylococcus_virus	29.4	2.9e-09
WP_000856958.1|2303679_2305182_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGX6	Staphylococcus_phage	95.4	9.8e-276
WP_000760770.1|2305841_2306018_-	hypothetical protein	NA	A0A0N9SK66	Staphylococcus_phage	98.3	1.8e-24
WP_000348472.1|2306152_2307802_-	hypothetical protein	NA	A0A0N9SHY1	Staphylococcus_phage	94.5	6.1e-312
2307245:2307264	attR	ATCTTTTTCTTTATTCAATT	NA	NA	NA	NA
WP_000748898.1|2307954_2308569_-	LPXTG cell wall anchor domain-containing protein	NA	A0A0N9STB7	Staphylococcus_phage	96.6	6.8e-74
WP_001283612.1|2309486_2310122_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_000602071.1|2310374_2312303_+	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.4	5.4e-53
>prophage 1
NC_017352	Staphylococcus aureus subsp. aureus TW20 plasmid pTW20_1, complete sequence	29585	14048	23735	29585	transposase,integrase	Mycobacterium_phage(28.57%)	10	NA	NA
WP_000622774.1|14048_15593_-	QacA/B family quaternary ammonium compound efflux MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	26.8	3.3e-32
WP_001807342.1|15770_16337_+	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA	NA
WP_000797248.1|16469_16655_-	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_001049146.1|16659_16998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000583528.1|17243_17852_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_000164963.1|18003_18819_-	AAA family ATPase	NA	A0A0M3LP72	Mannheimia_phage	29.8	4.0e-05
WP_000790705.1|18811_20254_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_000690629.1|20225_20819_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	50.6	3.3e-41
WP_000726007.1|21190_21559_+	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	85.2	4.2e-55
WP_000003262.1|21551_23735_+	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.9	3.1e-254
