assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000026605.1_ASM2660v1	NC_012470	Streptococcus equi subsp. zooepidemicus, complete genome	1	1263308-1263424	1	CRISPRCasFinder	no		cas3,DEDDh,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	TTTTAGTATAAGCTGTCATCAAGTCAGGTAAATA	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA|713aa|up_5|NC_012470.1_1257004_1259143_-,NA|152aa|down_1|NC_012470.1_1268378_1268834_+,NA|96aa|down_2|NC_012470.1_1268833_1269121_+,NA|183aa|down_3|NC_012470.1_1269113_1269662_+	NA|372aa|up_9|NC_012470.1_1247017_1248133_-	PRK07324, PRK07324, transaminase; Validated	NA|1215aa|up_8|NC_012470.1_1248396_1252041_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1074aa|up_7|NC_012470.1_1252030_1255252_-	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|467aa|up_6|NC_012470.1_1255462_1256863_-	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|713aa|up_5|NC_012470.1_1257004_1259143_-	NA	NA|478aa|up_4|NC_012470.1_1259149_1260583_-	pfam08757, CotH, CotH kinase protein	NA|226aa|up_3|NC_012470.1_1260588_1261266_-	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|232aa|up_2|NC_012470.1_1261279_1261975_-	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|212aa|up_1|NC_012470.1_1262102_1262738_-	pfam13490, zf-HC2, Putative zinc-finger	NA|180aa|up_0|NC_012470.1_1262727_1263267_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|1239aa|down_0|NC_012470.1_1263555_1267272_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|152aa|down_1|NC_012470.1_1268378_1268834_+	NA	NA|96aa|down_2|NC_012470.1_1268833_1269121_+	NA	NA|183aa|down_3|NC_012470.1_1269113_1269662_+	NA	NA|420aa|down_4|NC_012470.1_1269699_1270959_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|422aa|down_5|NC_012470.1_1271263_1272529_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|392aa|down_6|NC_012470.1_1272608_1273784_-	pfam09028, Mac-1, Mac 1	NA|270aa|down_7|NC_012470.1_1274098_1274908_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|481aa|down_8|NC_012470.1_1274988_1276431_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|655aa|down_9|NC_012470.1_1276445_1278410_-	pfam05738, Cna_B, Cna protein B-type domain
GCF_000026605.1_ASM2660v1	NC_012470	Streptococcus equi subsp. zooepidemicus, complete genome	2	1550682-1550794	2	CRISPRCasFinder	no		cas3,DEDDh,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	CGTGGAGATAAAGGTGAAACCGGAGAAGCCGGTCCTAAAGG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA	NA|157aa|up_9|NC_012470.1_1540554_1541025_-	COG1438, ArgR, Arginine repressor [Transcription]	NA|276aa|up_8|NC_012470.1_1541011_1541839_-	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|290aa|up_7|NC_012470.1_1541831_1542701_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|72aa|up_6|NC_012470.1_1542700_1542916_-	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|447aa|up_5|NC_012470.1_1542893_1544234_-	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|285aa|up_4|NC_012470.1_1544517_1545372_-	cd01171, YXKO-related, B	NA|285aa|up_3|NC_012470.1_1545368_1546223_-	PRK14179, PRK14179, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA|565aa|up_2|NC_012470.1_1546334_1548029_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|246aa|up_1|NC_012470.1_1548475_1549213_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|228aa|up_0|NC_012470.1_1549214_1549898_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|77aa|down_0|NC_012470.1_1551708_1551939_-	COG4703, COG4703, Uncharacterized protein conserved in bacteria [Function unknown]	NA|752aa|down_1|NC_012470.1_1552221_1554477_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|149aa|down_2|NC_012470.1_1554623_1555070_+	cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	NA|101aa|down_3|NC_012470.1_1555131_1555434_+	pfam08860, DUF1827, Domain of unknown function (DUF1827)	NA|933aa|down_4|NC_012470.1_1555904_1558703_-	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional	NA|252aa|down_5|NC_012470.1_1558973_1559729_-	pfam05103, DivIVA, DivIVA protein	NA|265aa|down_6|NC_012470.1_1559738_1560533_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|86aa|down_7|NC_012470.1_1560529_1560787_-	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|221aa|down_8|NC_012470.1_1560791_1561454_-	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|224aa|down_9|NC_012470.1_1561466_1562138_-	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]
GCF_000026605.1_ASM2660v1	NC_012470	Streptococcus equi subsp. zooepidemicus, complete genome	3	1604884-1606107	3,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DEDDh,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACTCGCCCGCAAAGGGCGAGAC,ATTTCAATCCACTCGCCCGNANNGGGCGAGAC,ATTTCAATCCACTCGCCCGTATGGGGCGAGAC,ATTTCAATCCACTCGCCCGCAAAGGGCGAGAC	32,32,32,32	0	0	NA	NA	I-C:I-C:I-C:I-C	18,18,14,14	18	TypeI-C,TypeI-U?,TypeI-U	cas3,DEDDh,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|198aa|down_7|NC_012470.1_1615369_1615963_-,NA|50aa|down_9|NC_012470.1_1616411_1616561_-	NA|227aa|up_9|NC_012470.1_1593384_1594065_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|157aa|up_8|NC_012470.1_1594209_1594680_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|163aa|up_7|NC_012470.1_1595190_1595679_-	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|235aa|up_6|NC_012470.1_1595938_1596643_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|363aa|up_5|NC_012470.1_1596657_1597746_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|573aa|up_4|NC_012470.1_1597785_1599504_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NC_012470.1_1599500_1600241_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|371aa|up_2|NC_012470.1_1600508_1601621_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|217aa|up_1|NC_012470.1_1601638_1602289_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NC_012470.1_1602302_1603013_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NC_012470.1_1606254_1606548_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|342aa|down_1|NC_012470.1_1606558_1607584_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|224aa|down_2|NC_012470.1_1607580_1608252_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NC_012470.1_1608253_1609102_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|628aa|down_4|NC_012470.1_1609102_1610986_-	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|down_5|NC_012470.1_1610985_1611705_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|818aa|down_6|NC_012470.1_1612459_1614913_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|198aa|down_7|NC_012470.1_1615369_1615963_-	NA	NA|124aa|down_8|NC_012470.1_1615963_1616335_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|50aa|down_9|NC_012470.1_1616411_1616561_-	NA
GCF_000026605.1_ASM2660v1	NC_012470	Streptococcus equi subsp. zooepidemicus, complete genome	4	1734698-1734768	4	CRISPRCasFinder	no		cas3,DEDDh,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	ACTATCTTTGAAAAGCCACAGGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csm6,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|99aa|down_1|NC_012470.1_1735869_1736166_+	NA|117aa|up_9|NC_012470.1_1723673_1724024_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|960aa|up_8|NC_012470.1_1724213_1727093_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|101aa|up_7|NC_012470.1_1727112_1727415_-	PRK07283, PRK07283, YlxQ-related RNA-binding protein	NA|99aa|up_6|NC_012470.1_1727407_1727704_-	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|385aa|up_5|NC_012470.1_1727719_1728874_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|161aa|up_4|NC_012470.1_1728983_1729466_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|212aa|up_3|NC_012470.1_1730809_1731445_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NC_012470.1_1731444_1732236_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|345aa|up_1|NC_012470.1_1732298_1733333_-	COG4473, EcsB, Predicted ABC-type exoprotein transport system, permease component [Intracellular trafficking and secretion]	NA|242aa|up_0|NC_012470.1_1733336_1734062_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|140aa|down_0|NC_012470.1_1735453_1735873_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|99aa|down_1|NC_012470.1_1735869_1736166_+	NA	NA|421aa|down_2|NC_012470.1_1736335_1737598_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|176aa|down_3|NC_012470.1_1737598_1738126_-	PRK10140, PRK10140, N-acetyltransferase	NA|148aa|down_4|NC_012470.1_1738118_1738562_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|487aa|down_5|NC_012470.1_1738927_1740388_-	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|271aa|down_6|NC_012470.1_1740646_1741459_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|331aa|down_7|NC_012470.1_1741810_1742803_+	PRK15088, PRK15088, PTS system mannose-specific transporter subunits IIAB; Provisional	NA|270aa|down_8|NC_012470.1_1742970_1743780_+	PRK15065, PRK15065, mannose/fructose/sorbose family PTS transporter subunit IIC	NA|304aa|down_9|NC_012470.1_1743795_1744707_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
