assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000026345.1_ASM2634v1	NC_011750	Escherichia coli IAI39, complete genome	1	1460683-1460806	1	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	NA,NA|30aa|down_7|NC_011750.1_1469702_1469792_+	NA|471aa|up_9|NC_011750.1_1450134_1451547_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NC_011750.1_1452103_1452313_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NC_011750.1_1452769_1453396_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NC_011750.1_1453416_1455519_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NC_011750.1_1455531_1456170_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NC_011750.1_1456233_1456902_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NC_011750.1_1456898_1457684_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NC_011750.1_1457687_1458500_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NC_011750.1_1458511_1460116_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NC_011750.1_1460241_1460547_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NC_011750.1_1461120_1462377_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NC_011750.1_1462417_1463791_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NC_011750.1_1464005_1464647_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NC_011750.1_1464686_1465835_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NC_011750.1_1466125_1467337_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NC_011750.1_1467449_1468382_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NC_011750.1_1468378_1469404_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NC_011750.1_1469702_1469792_+	NA	NA|390aa|down_8|NC_011750.1_1469957_1471127_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NC_011750.1_1471272_1471854_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_000026345.1_ASM2634v1	NC_011750	Escherichia coli IAI39, complete genome	2	1937600-1937802	2	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	Orphan	TCCACGTACTGACGGACCTGTGCTATCTG	29	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	NA|38aa|up_6|NC_011750.1_1930249_1930363_+,NA|78aa|up_5|NC_011750.1_1930431_1930665_+,NA|94aa|up_2|NC_011750.1_1933265_1933547_-,NA	NA|68aa|up_9|NC_011750.1_1926573_1926777_+	TIGR03318, YdfZ_fam, putative selenium-binding protein YdfZ	NA|487aa|up_8|NC_011750.1_1926812_1928273_-	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|428aa|up_7|NC_011750.1_1928362_1929646_-	TIGR00883, Putative_metabolite_transport_protein, metabolite-proton symporter	NA|38aa|up_6|NC_011750.1_1930249_1930363_+	NA	NA|78aa|up_5|NC_011750.1_1930431_1930665_+	NA	NA|405aa|up_4|NC_011750.1_1931383_1932597_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|218aa|up_3|NC_011750.1_1932602_1933256_-	pfam13884, Peptidase_S74, Chaperone of endosialidase	NA|94aa|up_2|NC_011750.1_1933265_1933547_-	NA	NA|800aa|up_1|NC_011750.1_1933543_1935943_-	pfam08400, phage_tail_N, Prophage tail fibre N-terminal	NA|200aa|up_0|NC_011750.1_1936007_1936607_-	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein	NA|211aa|down_0|NC_011750.1_1940818_1941451_-	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|248aa|down_1|NC_011750.1_1941396_1942140_-	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|233aa|down_2|NC_011750.1_1942145_1942844_-	COG4672, gp18, Phage-related protein [Function unknown]	NA|110aa|down_3|NC_011750.1_1942843_1943173_-	COG4718, COG4718, Phage-related protein [Function unknown]	NA|854aa|down_4|NC_011750.1_1943169_1945731_-	COG5281, COG5281, Phage-related minor tail protein [Function unknown]	NA|138aa|down_5|NC_011750.1_1945711_1946125_-	TIGR01715, Gifsy-2_prophage_probable_minor_tail_protein, phage tail assembly protein T	NA|144aa|down_6|NC_011750.1_1946151_1946583_-	pfam06894, Phage_TAC_2, Bacteriophage lambda tail assembly chaperone, TAC, protein G	NA|249aa|down_7|NC_011750.1_1946601_1947348_-	pfam16461, Phage_TTP_12, Lambda phage tail tube protein, TTP	NA|132aa|down_8|NC_011750.1_1947355_1947751_-	pfam06141, Phage_tail_U, Phage minor tail protein U	NA|178aa|down_9|NC_011750.1_1947747_1948281_-	pfam06763, Minor_tail_Z, Prophage minor tail protein Z (GPZ)
GCF_000026345.1_ASM2634v1	NC_011750	Escherichia coli IAI39, complete genome	3	2195333-2195424	3	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	NA|74aa|up_8|NC_011750.1_2184710_2184932_-,NA	NA|503aa|up_9|NC_011750.1_2183055_2184564_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|74aa|up_8|NC_011750.1_2184710_2184932_-	NA	NA|1321aa|up_7|NC_011750.1_2184986_2188949_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NC_011750.1_2188988_2189627_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|231aa|up_5|NC_011750.1_2190866_2191559_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NC_011750.1_2191570_2191957_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NC_011750.1_2191964_2192765_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NC_011750.1_2192774_2193365_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NC_011750.1_2193375_2193870_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NC_011750.1_2193890_2195219_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NC_011750.1_2195847_2196444_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NC_011750.1_2196464_2196692_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NC_011750.1_2196729_2197971_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NC_011750.1_2198263_2199520_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NC_011750.1_2199779_2200700_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NC_011750.1_2200699_2201005_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NC_011750.1_2201156_2201756_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NC_011750.1_2201752_2204299_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NC_011750.1_2204298_2205471_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NC_011750.1_2205600_2206293_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_000026345.1_ASM2634v1	NC_011750	Escherichia coli IAI39, complete genome	4	2331517-2331664	4,1	CRISPRCasFinder,PILER-CR	no		c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	NA,NA	NA|448aa|up_9|NC_011750.1_2316286_2317630_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_8|NC_011750.1_2317640_2318252_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|450aa|up_7|NC_011750.1_2318414_2319763_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|1369aa|up_6|NC_011750.1_2319846_2323953_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NC_011750.1_2324087_2324582_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NC_011750.1_2325126_2326092_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NC_011750.1_2326214_2327981_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NC_011750.1_2327981_2329703_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NC_011750.1_2329744_2330449_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NC_011750.1_2330733_2330952_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NC_011750.1_2331878_2334155_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NC_011750.1_2334185_2334506_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NC_011750.1_2334828_2335053_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NC_011750.1_2335125_2337072_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NC_011750.1_2337068_2338184_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NC_011750.1_2338340_2339291_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NC_011750.1_2339287_2340946_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NC_011750.1_2341371_2342067_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|342aa|down_8|NC_011750.1_2342581_2343607_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|316aa|down_9|NC_011750.1_2343837_2344785_-	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC
GCF_000026345.1_ASM2634v1	NC_011750	Escherichia coli IAI39, complete genome	5	4938440-4938586	5	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,RT,DinG,cas3,csa3,PD-DExK,WYL	NA,NA	NA|335aa|up_9|NC_011750.1_4926915_4927920_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|311aa|up_8|NC_011750.1_4927943_4928876_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NC_011750.1_4928886_4930107_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NC_011750.1_4930784_4931237_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NC_011750.1_4931281_4932286_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NC_011750.1_4932447_4932864_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NC_011750.1_4933040_4933544_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NC_011750.1_4933736_4934924_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NC_011750.1_4934970_4937826_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NC_011750.1_4937825_4938269_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NC_011750.1_4938622_4940134_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NC_011750.1_4940400_4941501_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NC_011750.1_4941500_4942583_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NC_011750.1_4942701_4944204_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NC_011750.1_4944281_4945280_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NC_011750.1_4945346_4946666_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NC_011750.1_4946730_4947495_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NC_011750.1_4947518_4948550_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NC_011750.1_4948766_4949330_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NC_011750.1_4949333_4950353_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
