assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000026265.1_ASM2626v1	NC_011741	Escherichia coli IAI1, complete genome	1	805687-805826	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATTCGACCTAC	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|95aa|down_4|NC_011741.1_810356_810641_-,NA|192aa|down_5|NC_011741.1_810725_811301_-,NA|252aa|down_6|NC_011741.1_811311_812067_-,NA|94aa|down_9|NC_011741.1_812792_813074_-	NA|50aa|up_9|NC_011741.1_794666_794816_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NC_011741.1_794982_795756_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NC_011741.1_795755_796445_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NC_011741.1_796447_797506_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NC_011741.1_797506_798325_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NC_011741.1_798479_799475_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NC_011741.1_799515_800469_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NC_011741.1_800652_801705_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NC_011741.1_801780_803214_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NC_011741.1_803396_805658_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NC_011741.1_805891_807175_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|357aa|down_1|NC_011741.1_807309_808380_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|73aa|down_2|NC_011741.1_808357_808576_-	pfam07825, Exc, Excisionase-like protein	NA|374aa|down_3|NC_011741.1_808870_809991_-	pfam13683, rve_3, Integrase core domain	NA|95aa|down_4|NC_011741.1_810356_810641_-	NA	NA|192aa|down_5|NC_011741.1_810725_811301_-	NA	NA|252aa|down_6|NC_011741.1_811311_812067_-	NA	NA|136aa|down_7|NC_011741.1_812068_812476_-	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|74aa|down_8|NC_011741.1_812472_812694_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|94aa|down_9|NC_011741.1_812792_813074_-	NA
GCF_000026265.1_ASM2626v1	NC_011741	Escherichia coli IAI1, complete genome	2	977804-977952	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|551aa|up_9|NC_011741.1_964251_965904_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NC_011741.1_966047_966947_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NC_011741.1_967403_968099_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NC_011741.1_968524_970183_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NC_011741.1_970179_971136_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NC_011741.1_971286_972402_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NC_011741.1_972398_974345_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NC_011741.1_974417_974642_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NC_011741.1_974964_975285_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NC_011741.1_975315_977592_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NC_011741.1_978335_978554_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NC_011741.1_978838_979543_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NC_011741.1_979584_981306_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NC_011741.1_981306_983073_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NC_011741.1_983195_984161_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NC_011741.1_984705_985200_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1382aa|down_6|NC_011741.1_985334_989480_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NC_011741.1_989634_990246_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NC_011741.1_990256_991600_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NC_011741.1_991690_992983_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000026265.1_ASM2626v1	NC_011741	Escherichia coli IAI1, complete genome	3	2926711-2927775	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NC_011741.1_2918523_2919285_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_011741.1_2919265_2920315_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_011741.1_2920311_2920791_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_011741.1_2920790_2921501_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_011741.1_2921519_2921831_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_011741.1_2922024_2922348_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_011741.1_2922397_2923003_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_011741.1_2923002_2924430_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_011741.1_2924431_2925340_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_011741.1_2925591_2926629_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_011741.1_2927871_2928165_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NC_011741.1_2928161_2929085_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_011741.1_2929081_2929732_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_011741.1_2929713_2930460_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_011741.1_2930470_2931526_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NC_011741.1_2931537_2932074_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NC_011741.1_2932070_2933633_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NC_011741.1_2933730_2936430_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NC_011741.1_2936623_2936776_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NC_011741.1_2937040_2937775_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000026265.1_ASM2626v1	NC_011741	Escherichia coli IAI1, complete genome	4	2953475-2954784	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	21,21,21	21	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|121aa|down_3|NC_011741.1_2957524_2957887_+	NA|424aa|up_9|NC_011741.1_2942118_2943390_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_011741.1_2943380_2943641_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_011741.1_2943657_2944233_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NC_011741.1_2944380_2945241_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_011741.1_2945237_2946017_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NC_011741.1_2945994_2947404_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_011741.1_2947425_2948880_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_011741.1_2948949_2949735_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_011741.1_2950053_2951331_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_011741.1_2951357_2952836_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_011741.1_2955123_2955795_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NC_011741.1_2955967_2956570_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NC_011741.1_2956583_2957489_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NC_011741.1_2957524_2957887_+	NA	NA|433aa|down_4|NC_011741.1_2957942_2959241_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NC_011741.1_2959328_2960966_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NC_011741.1_2961193_2961985_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NC_011741.1_2962055_2962391_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NC_011741.1_2962390_2962639_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NC_011741.1_2962716_2964951_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
