assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000026225.1_ASM2622v1	NC_011740	Escherichia fergusonii ATCC 35469, complete genome	1	311193-312197	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,16,16	16	TypeI-E	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT,WYL	NA,NA|88aa|down_0|NC_011740.1_312261_312525_+	NA|112aa|up_9|NC_011740.1_300496_300832_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_8|NC_011740.1_300902_301694_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_7|NC_011740.1_301921_303559_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_6|NC_011740.1_303646_304945_+	PRK00077, eno, enolase; Provisional	NA|443aa|up_5|NC_011740.1_304999_306328_-	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|291aa|up_4|NC_011740.1_306444_307317_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NC_011740.1_307322_308471_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|303aa|up_2|NC_011740.1_308485_309394_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NC_011740.1_309407_310010_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NC_011740.1_310182_310854_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|88aa|down_0|NC_011740.1_312261_312525_+	NA	NA|121aa|down_1|NC_011740.1_312885_313248_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NC_011740.1_313566_315366_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NC_011740.1_315365_317078_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NC_011740.1_317141_317876_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|down_5|NC_011740.1_318233_320900_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|down_6|NC_011740.1_321314_322823_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|down_7|NC_011740.1_322815_323298_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|down_8|NC_011740.1_323310_324402_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|down_9|NC_011740.1_324404_325079_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI
GCF_000026225.1_ASM2622v1	NC_011740	Escherichia fergusonii ATCC 35469, complete genome	2	326990-328178	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,19,19	19	TypeI-E	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT,WYL	NA,NA	NA|571aa|up_9|NC_011740.1_315365_317078_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NC_011740.1_317141_317876_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NC_011740.1_318233_320900_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NC_011740.1_321314_322823_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NC_011740.1_322815_323298_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NC_011740.1_323310_324402_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NC_011740.1_324404_325079_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NC_011740.1_325065_325665_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NC_011740.1_325680_326598_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NC_011740.1_326599_326884_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NC_011740.1_328259_329297_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NC_011740.1_329548_330457_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NC_011740.1_330458_331886_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NC_011740.1_331885_332491_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NC_011740.1_332540_332864_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NC_011740.1_333038_333350_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NC_011740.1_333368_334079_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NC_011740.1_334078_334558_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NC_011740.1_334554_335604_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NC_011740.1_335584_336346_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000026225.1_ASM2622v1	NC_011740	Escherichia fergusonii ATCC 35469, complete genome	3	1059916-1060065	3	CRISPRCasFinder	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT	Orphan	GAGTTCACTGCCGTACAGGCAGCTTAGAAA	30	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT,WYL	NA,NA	NA|300aa|up_9|NC_011740.1_1046586_1047486_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|342aa|up_8|NC_011740.1_1047824_1048850_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|232aa|up_7|NC_011740.1_1049367_1050063_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NC_011740.1_1050484_1052143_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|317aa|up_5|NC_011740.1_1052139_1053090_-	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|372aa|up_4|NC_011740.1_1053251_1054367_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NC_011740.1_1054363_1056310_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|74aa|up_2|NC_011740.1_1056530_1056752_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|107aa|up_1|NC_011740.1_1057074_1057395_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|760aa|up_0|NC_011740.1_1057425_1059705_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NC_011740.1_1060449_1060668_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NC_011740.1_1060952_1061657_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NC_011740.1_1061698_1063420_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NC_011740.1_1063420_1065187_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NC_011740.1_1065309_1066275_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NC_011740.1_1066807_1067302_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1282aa|down_6|NC_011740.1_1067436_1071282_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NC_011740.1_1071440_1072052_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NC_011740.1_1072062_1073406_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NC_011740.1_1073496_1074789_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000026225.1_ASM2622v1	NC_011740	Escherichia fergusonii ATCC 35469, complete genome	4	1069604-1069706	4	CRISPRCasFinder	no		DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT	Orphan	AACCTGTAGCGCCGCAACAGCAGTA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT,WYL	NA,NA	NA|649aa|up_9|NC_011740.1_1054363_1056310_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|74aa|up_8|NC_011740.1_1056530_1056752_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|107aa|up_7|NC_011740.1_1057074_1057395_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|760aa|up_6|NC_011740.1_1057425_1059705_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|up_5|NC_011740.1_1060449_1060668_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|up_4|NC_011740.1_1060952_1061657_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|up_3|NC_011740.1_1061698_1063420_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|up_2|NC_011740.1_1063420_1065187_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|up_1|NC_011740.1_1065309_1066275_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|up_0|NC_011740.1_1066807_1067302_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|204aa|down_0|NC_011740.1_1071440_1072052_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_1|NC_011740.1_1072062_1073406_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_2|NC_011740.1_1073496_1074789_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|209aa|down_3|NC_011740.1_1074846_1075473_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|383aa|down_4|NC_011740.1_1075785_1076934_+	PRK03633, PRK03633, putative MFS family transporter protein; Provisional	NA|477aa|down_5|NC_011740.1_1077141_1078572_+	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|247aa|down_6|NC_011740.1_1078781_1079522_-	PRK11145, pflA, pyruvate formate lyase 1-activating protein	NA|761aa|down_7|NC_011740.1_1079714_1081997_-	cd01678, PFL1, Pyruvate formate lyase 1	NA|286aa|down_8|NC_011740.1_1082052_1082910_-	PRK10805, PRK10805, formate transporter; Provisional	NA|587aa|down_9|NC_011740.1_1083314_1085075_-	TIGR03549, TIGR03549, YcaO domain protein
GCF_000026225.1_ASM2622v1	NC_011740	Escherichia fergusonii ATCC 35469, complete genome	5	1416779-1416902	5	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK,RT,WYL	NA,NA	NA|249aa|up_9|NC_011740.1_1407005_1407752_+	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed	NA|424aa|up_8|NC_011740.1_1407726_1408998_+	PRK10948, PRK10948, Fe-S cluster assembly protein SufD	NA|407aa|up_7|NC_011740.1_1408994_1410215_+	PRK09295, PRK09295, cysteine desulfurase SufS	NA|139aa|up_6|NC_011740.1_1410227_1410644_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|334aa|up_5|NC_011740.1_1410792_1411794_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_4|NC_011740.1_1411847_1412084_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_3|NC_011740.1_1412392_1413805_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_2|NC_011740.1_1414318_1414528_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|537aa|up_1|NC_011740.1_1414566_1416177_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NC_011740.1_1416337_1416643_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|458aa|down_0|NC_011740.1_1417060_1418434_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|216aa|down_1|NC_011740.1_1418651_1419299_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_2|NC_011740.1_1419339_1420488_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|402aa|down_3|NC_011740.1_1420777_1421983_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NC_011740.1_1422096_1423029_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NC_011740.1_1423025_1424051_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NC_011740.1_1424347_1424437_+	PRK14756, small_mem_YnhF, YnhF family membrane protein; Validated	NA|389aa|down_7|NC_011740.1_1424604_1425771_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NC_011740.1_1425816_1426398_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|280aa|down_9|NC_011740.1_1426603_1427443_-	pfam00877, NLPC_P60, NlpC/P60 family
