assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000026145.1_ASM2614v1	NC_009445	Bradyrhizobium sp. ORS 278, complete genome	1	476627-476693	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,RT	Orphan	ACCTTCCAACCCCCCTACCAACC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,RT	NA|444aa|up_6|NC_009445.1_467681_469013_+,NA|116aa|up_5|NC_009445.1_469480_469828_+,NA|268aa|up_3|NC_009445.1_473017_473821_+,NA|149aa|up_0|NC_009445.1_475029_475476_+,NA|57aa|down_1|NC_009445.1_477618_477789_+,NA|455aa|down_2|NC_009445.1_478190_479555_+,NA|238aa|down_4|NC_009445.1_483534_484248_-,NA|74aa|down_5|NC_009445.1_484425_484647_+,NA|315aa|down_6|NC_009445.1_484719_485664_+,NA|83aa|down_7|NC_009445.1_485709_485958_-	NA|265aa|up_9|NC_009445.1_465096_465891_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|301aa|up_8|NC_009445.1_466000_466903_+	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|76aa|up_7|NC_009445.1_467040_467268_+	pfam11127, DUF2892, Protein of unknown function (DUF2892)	NA|444aa|up_6|NC_009445.1_467681_469013_+	NA	NA|116aa|up_5|NC_009445.1_469480_469828_+	NA	NA|424aa|up_4|NC_009445.1_471655_472927_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|268aa|up_3|NC_009445.1_473017_473821_+	NA	NA|120aa|up_2|NC_009445.1_474398_474758_+	COG1591, COG1591, Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]	NA|93aa|up_1|NC_009445.1_474754_475033_+	PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase; Validated	NA|149aa|up_0|NC_009445.1_475029_475476_+	NA	NA|125aa|down_0|NC_009445.1_476935_477310_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|57aa|down_1|NC_009445.1_477618_477789_+	NA	NA|455aa|down_2|NC_009445.1_478190_479555_+	NA	NA|1009aa|down_3|NC_009445.1_479573_482600_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|238aa|down_4|NC_009445.1_483534_484248_-	NA	NA|74aa|down_5|NC_009445.1_484425_484647_+	NA	NA|315aa|down_6|NC_009445.1_484719_485664_+	NA	NA|83aa|down_7|NC_009445.1_485709_485958_-	NA	NA|82aa|down_8|NC_009445.1_486028_486274_-	pfam01381, HTH_3, Helix-turn-helix	NA|115aa|down_9|NC_009445.1_486351_486696_+	pfam07410, Phage_Gp111, Streptococcus thermophilus bacteriophage Gp111 protein
GCF_000026145.1_ASM2614v1	NC_009445	Bradyrhizobium sp. ORS 278, complete genome	2	955816-955917	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,RT	Orphan	TCAACGACGGCACGATCGAGATC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,RT	NA,NA|66aa|down_6|NC_009445.1_968156_968354_+	NA|239aa|up_9|NC_009445.1_939906_940623_-	PRK08264, PRK08264, SDR family oxidoreductase	NA|287aa|up_8|NC_009445.1_940619_941480_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|292aa|up_7|NC_009445.1_941476_942352_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|297aa|up_6|NC_009445.1_942348_943239_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|336aa|up_5|NC_009445.1_943244_944252_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|514aa|up_4|NC_009445.1_944266_945808_-	cd08515, PBP2_NikA_DppA_OppA_like_10, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|415aa|up_3|NC_009445.1_945897_947142_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|215aa|up_2|NC_009445.1_947297_947942_+	COG5631, COG5631, Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]	NA|492aa|up_1|NC_009445.1_949546_951022_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|246aa|up_0|NC_009445.1_951042_951780_-	pfam06035, Peptidase_C93, Bacterial transglutaminase-like cysteine proteinase BTLCP	NA|745aa|down_0|NC_009445.1_958899_961134_+	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria	NA|532aa|down_1|NC_009445.1_961414_963010_-	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|558aa|down_2|NC_009445.1_963204_964878_+	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|318aa|down_3|NC_009445.1_965008_965962_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|301aa|down_4|NC_009445.1_965964_966867_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|350aa|down_5|NC_009445.1_967078_968128_+	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|66aa|down_6|NC_009445.1_968156_968354_+	NA	NA|471aa|down_7|NC_009445.1_968350_969763_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|327aa|down_8|NC_009445.1_970070_971051_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|90aa|down_9|NC_009445.1_971175_971445_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_000026145.1_ASM2614v1	NC_009445	Bradyrhizobium sp. ORS 278, complete genome	3	956197-956315	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,RT	Orphan	TCAACGACGGCACGATCGAGATC	23	1	1	956220-956235	NC_009445.1_5323111-5323096	NA	2	2	Orphan	DEDDh,csa3,WYL,cas3,RT	NA,NA|66aa|down_6|NC_009445.1_968156_968354_+	NA|239aa|up_9|NC_009445.1_939906_940623_-	PRK08264, PRK08264, SDR family oxidoreductase	NA|287aa|up_8|NC_009445.1_940619_941480_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|292aa|up_7|NC_009445.1_941476_942352_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|297aa|up_6|NC_009445.1_942348_943239_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|336aa|up_5|NC_009445.1_943244_944252_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|514aa|up_4|NC_009445.1_944266_945808_-	cd08515, PBP2_NikA_DppA_OppA_like_10, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|415aa|up_3|NC_009445.1_945897_947142_-	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|215aa|up_2|NC_009445.1_947297_947942_+	COG5631, COG5631, Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]	NA|492aa|up_1|NC_009445.1_949546_951022_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|246aa|up_0|NC_009445.1_951042_951780_-	pfam06035, Peptidase_C93, Bacterial transglutaminase-like cysteine proteinase BTLCP	NA|745aa|down_0|NC_009445.1_958899_961134_+	smart01080, CHASE2, CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are parts of signal transduction pathways in bacteria	NA|532aa|down_1|NC_009445.1_961414_963010_-	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|558aa|down_2|NC_009445.1_963204_964878_+	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|318aa|down_3|NC_009445.1_965008_965962_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|301aa|down_4|NC_009445.1_965964_966867_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|350aa|down_5|NC_009445.1_967078_968128_+	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|66aa|down_6|NC_009445.1_968156_968354_+	NA	NA|471aa|down_7|NC_009445.1_968350_969763_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|327aa|down_8|NC_009445.1_970070_971051_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|90aa|down_9|NC_009445.1_971175_971445_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_000026145.1_ASM2614v1	NC_009445	Bradyrhizobium sp. ORS 278, complete genome	4	6666082-6666273	4,1	CRISPRCasFinder,CRT	no		DEDDh,csa3,WYL,cas3,RT	Orphan	TTTTGACAAAACCGTATATCACCTATC,TTTTGACAAAACCGTATATCACCTATC	27,27	0	0	NA	NA	NA:NA	3,3	3	Orphan	DEDDh,csa3,WYL,cas3,RT	NA|390aa|up_9|NC_009445.1_6655577_6656747_+,NA|88aa|up_8|NC_009445.1_6656740_6657004_-,NA|631aa|up_6|NC_009445.1_6658809_6660702_-,NA|67aa|up_5|NC_009445.1_6661193_6661394_-,NA|103aa|up_3|NC_009445.1_6663116_6663425_+,NA|118aa|up_2|NC_009445.1_6663477_6663831_-,NA|52aa|down_0|NC_009445.1_6667389_6667545_-,NA|245aa|down_1|NC_009445.1_6667590_6668325_-,NA|79aa|down_3|NC_009445.1_6669173_6669410_+,NA|81aa|down_7|NC_009445.1_6675641_6675884_-	NA|390aa|up_9|NC_009445.1_6655577_6656747_+	NA	NA|88aa|up_8|NC_009445.1_6656740_6657004_-	NA	NA|300aa|up_7|NC_009445.1_6657484_6658384_-	pfam14022, DUF4238, Protein of unknown function (DUF4238)	NA|631aa|up_6|NC_009445.1_6658809_6660702_-	NA	NA|67aa|up_5|NC_009445.1_6661193_6661394_-	NA	NA|307aa|up_4|NC_009445.1_6662227_6663148_+	pfam12834, Phage_int_SAM_2, Phage integrase, N-terminal	NA|103aa|up_3|NC_009445.1_6663116_6663425_+	NA	NA|118aa|up_2|NC_009445.1_6663477_6663831_-	NA	NA|221aa|up_1|NC_009445.1_6663802_6664465_-	cd02042, ParAB_family, partition proteins ParAB family	NA|413aa|up_0|NC_009445.1_6664829_6666068_+	pfam10134, RPA, Replication initiator protein A	NA|52aa|down_0|NC_009445.1_6667389_6667545_-	NA	NA|245aa|down_1|NC_009445.1_6667590_6668325_-	NA	NA|188aa|down_2|NC_009445.1_6668550_6669114_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|79aa|down_3|NC_009445.1_6669173_6669410_+	NA	NA|537aa|down_4|NC_009445.1_6670257_6671868_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|478aa|down_5|NC_009445.1_6672397_6673831_+	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like	NA|535aa|down_6|NC_009445.1_6673990_6675595_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|81aa|down_7|NC_009445.1_6675641_6675884_-	NA	NA|254aa|down_8|NC_009445.1_6676073_6676835_-	PRK06949, PRK06949, SDR family oxidoreductase	NA|172aa|down_9|NC_009445.1_6676946_6677462_+	pfam02674, Colicin_V, Colicin V production protein
