assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025945.1_ASM2594v1	NC_006138	Desulfotalea psychrophila LSv54, complete genome	1	52251-52334	1	CRISPRCasFinder	no		csa3,cas8u1,cas3,csb2gr5,cas7,DEDDh,DinG,cas2,RT,Cas9_archaeal	Orphan	GGAGGACACTGATCCCTTTTAGGTAAA	27	1	2	52278-52307|52278-52307	NC_006138.1_50869-50898|NC_006138.1_54537-54566	NA	1	1	Orphan	csa3,cas8u1,cas3,csb2gr5,cas7,DEDDh,DinG,cas2,RT,Cas9_archaeal	NA|324aa|up_8|NC_006138.1_41333_42305_-,NA|515aa|down_2|NC_006138.1_56885_58430_-,NA|81aa|down_4|NC_006138.1_59811_60054_+	NA|176aa|up_9|NC_006138.1_40809_41337_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|324aa|up_8|NC_006138.1_41333_42305_-	NA	NA|230aa|up_7|NC_006138.1_42312_43002_-	pfam08889, WbqC, WbqC-like protein family	NA|369aa|up_6|NC_006138.1_43004_44111_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|294aa|up_5|NC_006138.1_44107_44989_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|353aa|up_4|NC_006138.1_44988_46047_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|346aa|up_3|NC_006138.1_46063_47101_-	PRK15181, PRK15181, Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA|427aa|up_2|NC_006138.1_47109_48390_-	PRK15182, PRK15182, Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA|667aa|up_1|NC_006138.1_48435_50436_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|124aa|up_0|NC_006138.1_51226_51598_-	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily	NA|356aa|down_0|NC_006138.1_53138_54206_-	COG3765, WzzB, Chain length determinant protein [Cell envelope biogenesis, outer membrane]	NA|435aa|down_1|NC_006138.1_55061_56366_-	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional	NA|515aa|down_2|NC_006138.1_56885_58430_-	NA	NA|293aa|down_3|NC_006138.1_58966_59845_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|81aa|down_4|NC_006138.1_59811_60054_+	NA	NA|323aa|down_5|NC_006138.1_60667_61636_-	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed	NA|469aa|down_6|NC_006138.1_61758_63165_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|65aa|down_7|NC_006138.1_63370_63565_+	pfam01165, Ribosomal_S21, Ribosomal protein S21	NA|883aa|down_8|NC_006138.1_64309_66958_+	cd17772, CBS_pair_DHH_polyA_Pol_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the DHH and nucleotidyltransferase (NT) domains	NA|211aa|down_9|NC_006138.1_67021_67654_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms
GCF_000025945.1_ASM2594v1	NC_006138	Desulfotalea psychrophila LSv54, complete genome	2	198142-199100	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas8u1,cas3,csb2gr5,cas7	csa3,cas8u1,cas3,csb2gr5,cas7,DEDDh,DinG,cas2,RT,Cas9_archaeal	Unclear	GCTTCAATGTAGTCACCCCTTTCGAGGTGATTGATAC,GCTTCAATGTAGTCACCCCTTTCGAGGTGATTGATAC,CTTCAATGTAGTCACCCCTTTCGAGGTGATTGATAC	37,37,36	0	0	NA	NA	NA:NA:NA	13,13,13	13	Unclear	csa3,cas8u1,cas3,csb2gr5,cas7,DEDDh,DinG,cas2,RT,Cas9_archaeal	NA|85aa|up_8|NC_006138.1_187649_187904_+,NA|102aa|up_7|NC_006138.1_188011_188317_+,NA|230aa|up_2|NC_006138.1_193442_194132_+,NA|306aa|up_1|NC_006138.1_194435_195353_+,cas8u1|224aa|down_0|NC_006138.1_199249_199921_-,NA|142aa|down_3|NC_006138.1_203453_203879_-	NA|120aa|up_9|NC_006138.1_187210_187570_+	pfam04358, DsrC, DsrC like protein	NA|85aa|up_8|NC_006138.1_187649_187904_+	NA	NA|102aa|up_7|NC_006138.1_188011_188317_+	NA	NA|110aa|up_6|NC_006138.1_189034_189364_+	pfam07238, PilZ, PilZ domain	NA|120aa|up_5|NC_006138.1_189764_190124_+	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|205aa|up_4|NC_006138.1_190440_191055_-	pfam11185, DUF2971, Protein of unknown function (DUF2971)	NA|440aa|up_3|NC_006138.1_192108_193428_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|230aa|up_2|NC_006138.1_193442_194132_+	NA	NA|306aa|up_1|NC_006138.1_194435_195353_+	NA	NA|651aa|up_0|NC_006138.1_195349_197302_+	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain	cas8u1|224aa|down_0|NC_006138.1_199249_199921_-	NA	cas3|754aa|down_1|NC_006138.1_199922_202184_-	cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3; Distinct Cas3 family with HD domain fused to C-termus of Helicase domain	csb2gr5|430aa|down_2|NC_006138.1_202167_203457_-	pfam09609, Cas_GSU0054, CRISPR-associated protein, GSU0054 family (Cas_GSU0054)	NA|142aa|down_3|NC_006138.1_203453_203879_-	NA	cas7|173aa|down_4|NC_006138.1_203971_204490_-	cd09738, Csb1_I-U, CRISPR/Cas system-associated protein Csb1	NA|96aa|down_5|NC_006138.1_207027_207315_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|361aa|down_6|NC_006138.1_207546_208629_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|349aa|down_7|NC_006138.1_208860_209907_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|192aa|down_8|NC_006138.1_209985_210561_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|265aa|down_9|NC_006138.1_210649_211444_-	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator
GCF_000025945.1_ASM2594v1	NC_006138	Desulfotalea psychrophila LSv54, complete genome	3	748337-748447	3	CRISPRCasFinder	no		csa3,cas8u1,cas3,csb2gr5,cas7,DEDDh,DinG,cas2,RT,Cas9_archaeal	Orphan	AAAACTTGAGGAGACGGCCAATATACA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas8u1,cas3,csb2gr5,cas7,DEDDh,DinG,cas2,RT,Cas9_archaeal	NA|122aa|up_9|NC_006138.1_736142_736508_+,NA|59aa|down_9|NC_006138.1_763726_763903_+	NA|122aa|up_9|NC_006138.1_736142_736508_+	NA	NA|299aa|up_8|NC_006138.1_736529_737426_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|209aa|up_7|NC_006138.1_737621_738248_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|629aa|up_6|NC_006138.1_739841_741728_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|230aa|up_5|NC_006138.1_741814_742504_+	pfam10056, DUF2293, Uncharacterized conserved protein (DUF2293)	NA|355aa|up_4|NC_006138.1_742878_743943_+	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria	NA|353aa|up_3|NC_006138.1_744019_745078_+	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|307aa|up_2|NC_006138.1_745077_745998_+	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|161aa|up_1|NC_006138.1_746025_746508_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|496aa|up_0|NC_006138.1_746511_747999_+	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|888aa|down_0|NC_006138.1_748589_751253_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|628aa|down_1|NC_006138.1_751256_753140_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|155aa|down_2|NC_006138.1_753129_753594_-	pfam01257, 2Fe-2S_thioredx, Thioredoxin-like [2Fe-2S] ferredoxin	NA|91aa|down_3|NC_006138.1_754022_754295_+	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|589aa|down_4|NC_006138.1_754378_756145_+	COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]	NA|500aa|down_5|NC_006138.1_756228_757728_+	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|880aa|down_6|NC_006138.1_757844_760484_-	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only]	NA|460aa|down_7|NC_006138.1_760480_761860_-	COG2995, PqiA, Uncharacterized paraquat-inducible protein A [Function unknown]	NA|307aa|down_8|NC_006138.1_762136_763057_+	pfam08308, PEGA, PEGA domain	NA|59aa|down_9|NC_006138.1_763726_763903_+	NA
GCF_000025945.1_ASM2594v1	NC_006139	Desulfotalea psychrophila LSv54, complete genome	1	70417-70507	1	CRISPRCasFinder	no		RT	Orphan	GGCATTAATATTAATATCATTGCTAGCG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas8u1,cas3,csb2gr5,cas7,DEDDh,DinG,cas2,RT,Cas9_archaeal	NA|65aa|up_3|NC_006139.1_50209_50404_+,NA|160aa|up_2|NC_006139.1_52793_53273_-,NA|72aa|down_2|NC_006139.1_74150_74366_-	NA|335aa|up_9|NC_006139.1_44055_45060_-	PRK13878, PRK13878, conjugal transfer relaxase TraI; Provisional	NA|118aa|up_8|NC_006139.1_45056_45410_-	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ	NA|327aa|up_7|NC_006139.1_46707_47688_+	pfam13730, HTH_36, Helix-turn-helix domain	NA|96aa|up_6|NC_006139.1_48171_48459_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|107aa|up_5|NC_006139.1_48459_48780_-	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|284aa|up_4|NC_006139.1_49215_50067_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|65aa|up_3|NC_006139.1_50209_50404_+	NA	NA|160aa|up_2|NC_006139.1_52793_53273_-	NA	NA|576aa|up_1|NC_006139.1_53293_55021_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|766aa|up_0|NC_006139.1_55522_57820_-	pfam18676, MBG_2, MBG domain (YGX type)	NA|297aa|down_0|NC_006139.1_72793_73684_-	PRK13878, PRK13878, conjugal transfer relaxase TraI; Provisional	NA|111aa|down_1|NC_006139.1_73702_74035_-	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ	NA|72aa|down_2|NC_006139.1_74150_74366_-	NA	NA|86aa|down_3|NC_006139.1_74836_75094_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|369aa|down_4|NC_006139.1_75140_76247_+	COG4637, COG4637, Predicted ATPase [General function prediction only]	NA|229aa|down_5|NC_006139.1_76239_76926_+	pfam14103, DUF4276, Domain of unknown function (DUF4276)	NA|339aa|down_6|NC_006139.1_77829_78846_+	pfam13730, HTH_36, Helix-turn-helix domain	NA|350aa|down_7|NC_006139.1_79177_80227_+	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|117aa|down_8|NC_006139.1_80223_80574_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|192aa|down_9|NC_006139.1_80483_81059_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family
GCF_000025945.1_ASM2594v1	NC_006140	Desulfotalea psychrophila LSv54, complete genome	1	5359-5506	1	CRISPRCasFinder	no			Orphan	AACAAGCAAAAACTCGGAGTTAACAAGCAAAAACTCGGAGTTAGT	45	0	0	NA	NA	NA	1	1	Orphan	csa3,cas8u1,cas3,csb2gr5,cas7,DEDDh,DinG,cas2,RT,Cas9_archaeal	NA|152aa|up_3|NC_006140.1_1829_2285_+,NA|253aa|up_2|NC_006140.1_2285_3044_-,NA|177aa|up_1|NC_006140.1_3160_3691_-,NA|124aa|down_0|NC_006140.1_5974_6346_-,NA|181aa|down_3|NC_006140.1_7906_8449_+,NA|123aa|down_4|NC_006140.1_9112_9481_+,NA|307aa|down_5|NC_006140.1_9477_10398_+,NA|71aa|down_6|NC_006140.1_10458_10671_+,NA|102aa|down_7|NC_006140.1_10682_10988_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|380aa|up_4|NC_006140.1_295_1435_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|152aa|up_3|NC_006140.1_1829_2285_+	NA	NA|253aa|up_2|NC_006140.1_2285_3044_-	NA	NA|177aa|up_1|NC_006140.1_3160_3691_-	NA	NA|441aa|up_0|NC_006140.1_3722_5045_-	pfam01051, Rep_3, Initiator Replication protein	NA|124aa|down_0|NC_006140.1_5974_6346_-	NA	NA|97aa|down_1|NC_006140.1_6843_7134_-	pfam13155, Toprim_2, Toprim-like	NA|89aa|down_2|NC_006140.1_7470_7737_-	pfam01807, zf-CHC2, CHC2 zinc finger	NA|181aa|down_3|NC_006140.1_7906_8449_+	NA	NA|123aa|down_4|NC_006140.1_9112_9481_+	NA	NA|307aa|down_5|NC_006140.1_9477_10398_+	NA	NA|71aa|down_6|NC_006140.1_10458_10671_+	NA	NA|102aa|down_7|NC_006140.1_10682_10988_+	NA	NA|489aa|down_8|NC_006140.1_10999_12466_+	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer	NA|208aa|down_9|NC_006140.1_12503_13127_+	cd06257, DnaJ, DnaJ domain or J-domain
