assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025745.1_ASM2574v1	NC_017628	Escherichia coli IHE3034, complete sequence	1	762674-762804	1	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	Orphan	AGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	NA|125aa|up_6|NC_017628.1_756926_757301_-,NA|36aa|up_4|NC_017628.1_758937_759045_-,NA	NA|245aa|up_9|NC_017628.1_754170_754905_+	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins	NA|264aa|up_8|NC_017628.1_754940_755732_+	PRK10445, PRK10445, endonuclease VIII; Provisional	NA|349aa|up_7|NC_017628.1_755728_756775_-	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only]	NA|125aa|up_6|NC_017628.1_756926_757301_-	NA	NA|428aa|up_5|NC_017628.1_757448_758732_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NC_017628.1_758937_759045_-	NA	NA|135aa|up_3|NC_017628.1_759425_759830_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NC_017628.1_759823_760171_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NC_017628.1_760170_761937_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NC_017628.1_761952_762669_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NC_017628.1_763029_765831_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NC_017628.1_765845_767063_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NC_017628.1_767156_768323_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NC_017628.1_768322_769192_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|372aa|down_4|NC_017628.1_769431_770547_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_5|NC_017628.1_771876_773445_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_6|NC_017628.1_773460_774600_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|38aa|down_7|NC_017628.1_774614_774728_+	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|98aa|down_8|NC_017628.1_774727_775021_+	PRK10588, PRK10588, hypothetical protein; Provisional	NA|135aa|down_9|NC_017628.1_775170_775575_+	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional
GCF_000025745.1_ASM2574v1	NC_017628	Escherichia coli IHE3034, complete sequence	2	933764-934271	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	7,8,8	8	TypeI-F	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	NA|86aa|up_9|NC_017628.1_925809_926067_+,NA|69aa|up_7|NC_017628.1_926901_927108_+,NA|138aa|up_4|NC_017628.1_928522_928936_+,NA|94aa|up_2|NC_017628.1_929942_930224_+,NA|87aa|up_1|NC_017628.1_930373_930634_-,NA	NA|86aa|up_9|NC_017628.1_925809_926067_+	NA	NA|141aa|up_8|NC_017628.1_926063_926486_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|69aa|up_7|NC_017628.1_926901_927108_+	NA	NA|352aa|up_6|NC_017628.1_927107_928163_+	pfam03864, Phage_cap_E, Phage major capsid protein E	NA|112aa|up_5|NC_017628.1_928174_928510_+	pfam02924, HDPD, Bacteriophage lambda head decoration protein D	NA|138aa|up_4|NC_017628.1_928522_928936_+	NA	NA|181aa|up_3|NC_017628.1_929143_929686_+	COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair]	NA|94aa|up_2|NC_017628.1_929942_930224_+	NA	NA|87aa|up_1|NC_017628.1_930373_930634_-	NA	NA|107aa|up_0|NC_017628.1_930916_931237_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	cas1|328aa|down_0|NC_017628.1_934443_935427_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NC_017628.1_935423_938657_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NC_017628.1_938986_940294_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|down_3|NC_017628.1_941224_942226_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_4|NC_017628.1_942236_942791_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_5|NC_017628.1_943832_944051_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_6|NC_017628.1_944335_945040_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_7|NC_017628.1_945081_946803_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_8|NC_017628.1_946803_948570_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_9|NC_017628.1_948692_949658_-	PRK10262, PRK10262, thioredoxin reductase; Provisional
GCF_000025745.1_ASM2574v1	NC_017628	Escherichia coli IHE3034, complete sequence	3	943332-943720	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas7f,cas6f	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	5,6,6	6	TypeI-F	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	NA|138aa|up_9|NC_017628.1_928522_928936_+,NA|94aa|up_7|NC_017628.1_929942_930224_+,NA|87aa|up_6|NC_017628.1_930373_930634_-,NA	NA|138aa|up_9|NC_017628.1_928522_928936_+	NA	NA|181aa|up_8|NC_017628.1_929143_929686_+	COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair]	NA|94aa|up_7|NC_017628.1_929942_930224_+	NA	NA|87aa|up_6|NC_017628.1_930373_930634_-	NA	NA|107aa|up_5|NC_017628.1_930916_931237_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	cas1|328aa|up_4|NC_017628.1_934443_935427_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_3|NC_017628.1_935423_938657_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_2|NC_017628.1_938986_940294_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas7f|334aa|up_1|NC_017628.1_941224_942226_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NC_017628.1_942236_942791_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NC_017628.1_943832_944051_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NC_017628.1_944335_945040_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NC_017628.1_945081_946803_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NC_017628.1_946803_948570_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NC_017628.1_948692_949658_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NC_017628.1_950201_950696_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1348aa|down_6|NC_017628.1_950830_954874_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NC_017628.1_955032_955644_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NC_017628.1_955654_956998_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NC_017628.1_957088_958381_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000025745.1_ASM2574v1	NC_017628	Escherichia coli IHE3034, complete sequence	4	4425854-4426055	3	PILER-CR	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	NA,NA	NA|252aa|up_9|NC_017628.1_4417403_4418159_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NC_017628.1_4418172_4418778_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NC_017628.1_4418774_4420415_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NC_017628.1_4420493_4420763_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NC_017628.1_4420766_4421282_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NC_017628.1_4421284_4422061_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NC_017628.1_4422102_4422885_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NC_017628.1_4422881_4423370_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NC_017628.1_4423536_4425030_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NC_017628.1_4425075_4425777_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NC_017628.1_4426059_4427223_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NC_017628.1_4427232_4429422_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NC_017628.1_4429611_4430943_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NC_017628.1_4430942_4431557_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NC_017628.1_4431595_4433047_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NC_017628.1_4433058_4433604_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NC_017628.1_4439184_4439712_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NC_017628.1_4439693_4440278_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NC_017628.1_4440347_4440617_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NC_017628.1_4440693_4441680_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_000025745.1_ASM2574v1	NC_017628	Escherichia coli IHE3034, complete sequence	5	4706933-4707060	4	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	Orphan	GCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	NA,NA	NA|529aa|up_9|NC_017628.1_4696528_4698115_+	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|108aa|up_8|NC_017628.1_4698117_4698441_-	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|155aa|up_7|NC_017628.1_4698526_4698991_+	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR	NA|450aa|up_6|NC_017628.1_4699537_4700887_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|550aa|up_5|NC_017628.1_4701037_4702687_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|295aa|up_4|NC_017628.1_4702722_4703607_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|137aa|up_3|NC_017628.1_4703710_4704121_+	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only]	NA|230aa|up_2|NC_017628.1_4704113_4704803_+	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|550aa|up_1|NC_017628.1_4704841_4706491_-	PRK09395, actP, cation/acetate symporter ActP	NA|105aa|up_0|NC_017628.1_4706487_4706802_-	COG3162, COG3162, Predicted membrane protein [Function unknown]	NA|653aa|down_0|NC_017628.1_4707093_4709052_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|479aa|down_1|NC_017628.1_4709443_4710880_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|189aa|down_2|NC_017628.1_4710924_4711491_+	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional	NA|224aa|down_3|NC_017628.1_4711487_4712159_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|319aa|down_4|NC_017628.1_4712155_4713112_+	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit	NA|128aa|down_5|NC_017628.1_4714841_4715225_+	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional	NA|199aa|down_6|NC_017628.1_4715221_4715818_+	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|438aa|down_7|NC_017628.1_4716160_4717474_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|230aa|down_8|NC_017628.1_4717621_4718311_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|235aa|down_9|NC_017628.1_4718421_4719126_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_000025745.1_ASM2574v1	NC_017628	Escherichia coli IHE3034, complete sequence	6	4917483-4917622	5	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas7f,cas6f,cas3,csa3,RT	NA,NA	NA|335aa|up_9|NC_017628.1_4906027_4907032_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NC_017628.1_4907042_4907987_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NC_017628.1_4907997_4909218_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NC_017628.1_4909895_4910348_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NC_017628.1_4910393_4911398_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NC_017628.1_4911559_4911976_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NC_017628.1_4912152_4912656_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NC_017628.1_4912848_4914036_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NC_017628.1_4914082_4916938_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NC_017628.1_4916937_4917381_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NC_017628.1_4917638_4919150_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NC_017628.1_4919416_4920517_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NC_017628.1_4920516_4921599_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NC_017628.1_4921759_4923262_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NC_017628.1_4923339_4924338_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NC_017628.1_4924404_4925724_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NC_017628.1_4925788_4926553_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NC_017628.1_4926576_4927608_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NC_017628.1_4927824_4928388_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NC_017628.1_4928391_4929411_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
