assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025605.1_ASM2560v1	NC_013894	Thermocrinis albus DSM 14484, complete sequence	1	1-90	1	CRISPRCasFinder	no	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	Type III-B,Type III-A,Type III-D,Type III-C	CAACTCCACACGGTACATTAGAAAC	25	0	0	NA	NA	NA	1	1	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	NA,NA|156aa|down_0|NC_013894.1_392_860_+,NA|218aa|down_1|NC_013894.1_831_1485_+,NA|269aa|down_2|NC_013894.1_1471_2278_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|156aa|down_0|NC_013894.1_392_860_+	NA	NA|218aa|down_1|NC_013894.1_831_1485_+	NA	NA|269aa|down_2|NC_013894.1_1471_2278_+	NA	NA|487aa|down_3|NC_013894.1_2261_3722_+	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	cas6|240aa|down_4|NC_013894.1_3690_4410_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cmr1gr7|368aa|down_5|NC_013894.1_4397_5501_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas10|620aa|down_6|NC_013894.1_5497_7357_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|333aa|down_7|NC_013894.1_7358_8357_+	cd09656, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr4gr7|307aa|down_8|NC_013894.1_8358_9279_+	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr5gr11|128aa|down_9|NC_013894.1_9256_9640_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)
GCF_000025605.1_ASM2560v1	NC_013894	Thermocrinis albus DSM 14484, complete sequence	2	177442-180135	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,DEDDh	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	Unclear	CTTTCAACTCCACACGGTACATTAGAAAC,CTTTCAACTCCACACGGTACATTAGAAAC,CTTTCAACTCCACACGGTACATTAGAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	40,40,40	40	Unclear	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	NA|163aa|up_4|NC_013894.1_174560_175049_+,NA|49aa|down_0|NC_013894.1_180325_180472_+,NA|252aa|down_3|NC_013894.1_182542_183298_+	NA|419aa|up_9|NC_013894.1_168606_169863_-	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional	NA|160aa|up_8|NC_013894.1_169891_170371_-	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]	NA|331aa|up_7|NC_013894.1_170395_171388_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|504aa|up_6|NC_013894.1_171365_172877_+	COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]	NA|566aa|up_5|NC_013894.1_172879_174577_+	PRK14667, uvrC, excinuclease ABC subunit C; Provisional	NA|163aa|up_4|NC_013894.1_174560_175049_+	NA	NA|75aa|up_3|NC_013894.1_175020_175245_+	pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872	NA|239aa|up_2|NC_013894.1_175265_175982_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|242aa|up_1|NC_013894.1_175974_176700_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|149aa|up_0|NC_013894.1_176784_177231_+	TIGR02608, hypothetical_protein, delta-60 repeat domain	NA|49aa|down_0|NC_013894.1_180325_180472_+	NA	NA|194aa|down_1|NC_013894.1_180499_181081_+	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|477aa|down_2|NC_013894.1_181077_182508_+	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|252aa|down_3|NC_013894.1_182542_183298_+	NA	cas3|784aa|down_4|NC_013894.1_183285_185637_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|157aa|down_5|NC_013894.1_185614_186085_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|490aa|down_6|NC_013894.1_186081_187551_-	PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed	NA|342aa|down_7|NC_013894.1_187547_188573_-	COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]	NA|433aa|down_8|NC_013894.1_188575_189874_-	COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]	NA|671aa|down_9|NC_013894.1_189964_191977_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]
GCF_000025605.1_ASM2560v1	NC_013894	Thermocrinis albus DSM 14484, complete sequence	3	246542-250335	2,3,2,3,4,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no		cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	Orphan	CTTTCAACTCCACACGGTACATTAGAAAC,GTTTCTAATGTACCGTGTGGAGTTGAAAG,GTTTCTAATGTACCGTGTGGAGTTGAAAG,CTTTCAACTCCACACGGTACATTAGAAAC,CTTTCAACTCCACACGGTACATTAGAAAC,TTTCAACTCCACACGGTACATTAGAAAC	29,29,29,29,29,28	0	0	NA	NA	NA:NA:NA:NA:NA:NA	52,56,56,52,52,52	56	Orphan	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	NA|49aa|up_0|NC_013894.1_246204_246351_-,NA|139aa|down_9|NC_013894.1_261181_261598_+	NA|220aa|up_9|NC_013894.1_236766_237426_+	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]	NA|400aa|up_8|NC_013894.1_237382_238582_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|550aa|up_7|NC_013894.1_238592_240242_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|301aa|up_6|NC_013894.1_240246_241149_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|127aa|up_5|NC_013894.1_241165_241546_+	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]	NA|278aa|up_4|NC_013894.1_241475_242309_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|775aa|up_3|NC_013894.1_242308_244633_-	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|336aa|up_2|NC_013894.1_244616_245624_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|186aa|up_1|NC_013894.1_245616_246174_-	COG1514, LigT, 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]	NA|49aa|up_0|NC_013894.1_246204_246351_-	NA	NA|118aa|down_0|NC_013894.1_250357_250711_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|1000aa|down_1|NC_013894.1_250707_253707_-	COG3002, COG3002, Uncharacterized protein conserved in bacteria [Function unknown]	NA|760aa|down_2|NC_013894.1_253711_255991_-	COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism]	NA|234aa|down_3|NC_013894.1_256077_256779_-	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|350aa|down_4|NC_013894.1_256769_257819_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|206aa|down_5|NC_013894.1_257831_258449_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|344aa|down_6|NC_013894.1_258501_259533_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|408aa|down_7|NC_013894.1_259537_260761_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|141aa|down_8|NC_013894.1_260762_261185_+	pfam09988, DUF2227, Uncharacterized metal-binding protein (DUF2227)	NA|139aa|down_9|NC_013894.1_261181_261598_+	NA
GCF_000025605.1_ASM2560v1	NC_013894	Thermocrinis albus DSM 14484, complete sequence	4	389627-392006	6,4,3	PILER-CR,CRISPRCasFinder,CRT	no		cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	Orphan	CTTTCAACTCCACACGGTACATTAGAAAC,GTTTCTAATGTACCGTGTGGAGTTGAAAG,GTTTCTAATGTACCGTGTGGAGTTGAAAG	29,29,29	0	0	NA	NA	NA:NA:NA	30,35,35	35	Orphan	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	NA,NA|77aa|down_6|NC_013894.1_397467_397698_-	NA|418aa|up_9|NC_013894.1_379387_380641_-	TIGR01174, Cell_division_protein_FtsA, cell division protein FtsA	NA|214aa|up_8|NC_013894.1_380637_381279_-	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|289aa|up_7|NC_013894.1_381365_382232_-	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed	NA|296aa|up_6|NC_013894.1_382194_383082_-	COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|216aa|up_5|NC_013894.1_383081_383729_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|570aa|up_4|NC_013894.1_383725_385435_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|380aa|up_3|NC_013894.1_385445_386585_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|202aa|up_2|NC_013894.1_386616_387222_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|275aa|up_1|NC_013894.1_387230_388055_+	COG0392, COG0392, Predicted integral membrane protein [Function unknown]	NA|424aa|up_0|NC_013894.1_388014_389286_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|503aa|down_0|NC_013894.1_392515_394024_-	COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]	NA|298aa|down_1|NC_013894.1_394051_394945_+	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]	NA|149aa|down_2|NC_013894.1_394979_395426_+	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]	NA|385aa|down_3|NC_013894.1_395422_396577_+	cd08185, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|152aa|down_4|NC_013894.1_396658_397114_+	pfam07682, SOR, Sulphur oxygenase reductase	NA|117aa|down_5|NC_013894.1_397115_397466_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|77aa|down_6|NC_013894.1_397467_397698_-	NA	NA|464aa|down_7|NC_013894.1_397694_399086_-	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|163aa|down_8|NC_013894.1_399162_399651_+	pfam02830, V4R, V4R domain	NA|409aa|down_9|NC_013894.1_399647_400874_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
GCF_000025605.1_ASM2560v1	NC_013894	Thermocrinis albus DSM 14484, complete sequence	5	1389508-1389604	5	CRISPRCasFinder	no		cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	Orphan	ATCAATCAATTACTTATACATCTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	NA,NA|267aa|down_0|NC_013894.1_1391314_1392115_+,NA|348aa|down_4|NC_013894.1_1395340_1396384_+	NA|276aa|up_9|NC_013894.1_1380563_1381391_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|297aa|up_8|NC_013894.1_1381392_1382283_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|429aa|up_7|NC_013894.1_1382285_1383572_+	cd01660, ba3-like_Oxidase_I, ba3-like heme-copper oxidase subunit I	NA|251aa|up_6|NC_013894.1_1383543_1384296_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|290aa|up_5|NC_013894.1_1384307_1385177_+	pfam01430, HSP33, Hsp33 protein	NA|279aa|up_4|NC_013894.1_1385263_1386100_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|287aa|up_3|NC_013894.1_1386212_1387073_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|236aa|up_2|NC_013894.1_1387072_1387780_+	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|183aa|up_1|NC_013894.1_1387801_1388350_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|252aa|up_0|NC_013894.1_1388349_1389105_+	pfam04187, Cofac_haem_bdg, Haem-binding uptake, Tiki superfamily, ChaN	NA|267aa|down_0|NC_013894.1_1391314_1392115_+	NA	NA|134aa|down_1|NC_013894.1_1392071_1392473_+	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|446aa|down_2|NC_013894.1_1392630_1393968_+	cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily	NA|455aa|down_3|NC_013894.1_1393957_1395322_+	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|348aa|down_4|NC_013894.1_1395340_1396384_+	NA	NA|203aa|down_5|NC_013894.1_1396444_1397053_-	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|350aa|down_6|NC_013894.1_1397082_1398132_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|69aa|down_7|NC_013894.1_1398157_1398364_+	pfam11127, DUF2892, Protein of unknown function (DUF2892)	NA|212aa|down_8|NC_013894.1_1398353_1398989_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|219aa|down_9|NC_013894.1_1398942_1399599_+	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC
GCF_000025605.1_ASM2560v1	NC_013894	Thermocrinis albus DSM 14484, complete sequence	6	1496455-1500535	7,6,4	PILER-CR,CRISPRCasFinder,CRT	no		cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	Orphan	CTTTCAACTCCACACGGTACATTAGAAAC,CTTTCAACTCCACACGGTACATTAGAAAC,CTTTCAACTCCACACGGTACATTAGAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	59,60,60	60	Orphan	cas6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,cas7,cas5,cas8b2,cas3,DEDDh,cas14k,csa3	NA,NA	NA|917aa|up_9|NC_013894.1_1483212_1485963_+	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]	NA|852aa|up_8|NC_013894.1_1486007_1488563_+	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|55aa|up_7|NC_013894.1_1489294_1489459_+	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|191aa|up_6|NC_013894.1_1490234_1490807_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|191aa|up_5|NC_013894.1_1491312_1491885_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|289aa|up_4|NC_013894.1_1491897_1492764_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|257aa|up_3|NC_013894.1_1492760_1493531_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|349aa|up_2|NC_013894.1_1493511_1494558_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|369aa|up_1|NC_013894.1_1494547_1495654_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|107aa|up_0|NC_013894.1_1495898_1496219_+	PLN03138, PLN03138, Protein TOC75; Provisional	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
