assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025565.1_ASM2556v1	NC_014121	Enterobacter cloacae subsp. cloacae ATCC 13047, complete sequence	1	422993-423158	1	CRT	no		cas3,csa3,DEDDh,WYL,DinG	Orphan	GAGTCCGGAATCCGGACTCAGTC	23	0	0	NA	NA	NA	3	3	Orphan	cas3,csa3,DEDDh,WYL,DinG	NA|196aa|up_7|NC_014121.1_415008_415596_-,NA|77aa|up_0|NC_014121.1_422036_422267_+,NA	NA|374aa|up_9|NC_014121.1_412295_413416_-	pfam13683, rve_3, Integrase core domain	NA|399aa|up_8|NC_014121.1_413465_414662_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|196aa|up_7|NC_014121.1_415008_415596_-	NA	NA|295aa|up_6|NC_014121.1_416425_417310_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|455aa|up_5|NC_014121.1_417302_418667_+	TIGR00665, DnaB, replicative DNA helicase	NA|569aa|up_4|NC_014121.1_418663_420370_+	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|86aa|up_3|NC_014121.1_420362_420620_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|248aa|up_2|NC_014121.1_420609_421353_+	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|200aa|up_1|NC_014121.1_421437_422037_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|77aa|up_0|NC_014121.1_422036_422267_+	NA	NA|241aa|down_0|NC_014121.1_423830_424553_+	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|164aa|down_1|NC_014121.1_427214_427706_+	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|167aa|down_2|NC_014121.1_427781_428282_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|95aa|down_3|NC_014121.1_428437_428722_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|161aa|down_4|NC_014121.1_428712_429195_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|429aa|down_5|NC_014121.1_429427_430714_+	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|148aa|down_6|NC_014121.1_430715_431159_+	pfam07419, PilM, PilM	NA|558aa|down_7|NC_014121.1_431178_432852_+	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|427aa|down_8|NC_014121.1_432854_434135_+	pfam06864, PAP_PilO, Pilin accessory protein (PilO)	NA|166aa|down_9|NC_014121.1_434121_434619_+	TIGR03021, pilP_fam, type IV pilus biogenesis protein PilP
GCF_000025565.1_ASM2556v1	NC_014121	Enterobacter cloacae subsp. cloacae ATCC 13047, complete sequence	2	835526-835657	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG	Orphan	TGTTGCCGCCATCGTCGGTATTGC	24	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,WYL,DinG	NA,NA	NA|88aa|up_9|NC_014121.1_821886_822150_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|309aa|up_8|NC_014121.1_822477_823404_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|939aa|up_7|NC_014121.1_823449_826266_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|167aa|up_6|NC_014121.1_826265_826766_+	PRK00376, lspA, lipoprotein signal peptidase	NA|150aa|up_5|NC_014121.1_826883_827333_+	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|317aa|up_4|NC_014121.1_827334_828285_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|274aa|up_3|NC_014121.1_828490_829312_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_2|NC_014121.1_829766_830915_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1075aa|up_1|NC_014121.1_830933_834158_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|78aa|up_0|NC_014121.1_834297_834531_+	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|177aa|down_0|NC_014121.1_837868_838399_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|622aa|down_1|NC_014121.1_838391_840257_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_2|NC_014121.1_840371_840851_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|283aa|down_3|NC_014121.1_840890_841739_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|down_4|NC_014121.1_841743_842121_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|down_5|NC_014121.1_842124_842946_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|329aa|down_6|NC_014121.1_842942_843929_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|down_7|NC_014121.1_843928_845215_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|784aa|down_8|NC_014121.1_845268_847620_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|273aa|down_9|NC_014121.1_847859_848678_+	PRK09430, djlA, co-chaperone DjlA
GCF_000025565.1_ASM2556v1	NC_014121	Enterobacter cloacae subsp. cloacae ATCC 13047, complete sequence	3	1247976-1248108	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG	Orphan	GATTGCCGTTTTTAGTATTTATTCCCTCTCCCTGTGGG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG	NA,NA|84aa|down_3|NC_014121.1_1251031_1251283_+,NA|72aa|down_4|NC_014121.1_1251279_1251495_+	NA|110aa|up_9|NC_014121.1_1237115_1237445_+	COG3636, COG3636, Predicted transcriptional regulator [Transcription]	NA|232aa|up_8|NC_014121.1_1237447_1238143_-	PRK11106, PRK11106, queuosine biosynthesis protein QueC; Provisional	NA|567aa|up_7|NC_014121.1_1238209_1239910_-	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only]	NA|273aa|up_6|NC_014121.1_1240011_1240830_+	PRK15126, PRK15126, HMP-PP phosphatase	NA|349aa|up_5|NC_014121.1_1240871_1241918_-	COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]	NA|153aa|up_4|NC_014121.1_1242033_1242492_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|591aa|up_3|NC_014121.1_1242522_1244295_+	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein	NA|594aa|up_2|NC_014121.1_1244287_1246069_+	PRK10790, PRK10790, SmdB family multidrug efflux ABC transporter permease/ATP-binding protein	NA|113aa|up_1|NC_014121.1_1246291_1246630_+	PRK10665, PRK10665, P-II family nitrogen regulator	NA|429aa|up_0|NC_014121.1_1246665_1247952_+	PRK10666, PRK10666, ammonium transporter AmtB	NA|287aa|down_0|NC_014121.1_1248566_1249427_-	PRK10526, PRK10526, acyl-CoA thioesterase II; Provisional	NA|176aa|down_1|NC_014121.1_1249630_1250158_+	COG3126, COG3126, Uncharacterized protein conserved in bacteria [Function unknown]	NA|104aa|down_2|NC_014121.1_1250187_1250499_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|84aa|down_3|NC_014121.1_1251031_1251283_+	NA	NA|72aa|down_4|NC_014121.1_1251279_1251495_+	NA	NA|474aa|down_5|NC_014121.1_1251573_1252995_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|204aa|down_6|NC_014121.1_1253080_1253692_+	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|357aa|down_7|NC_014121.1_1253769_1254840_+	PRK09526, lacI, lac repressor; Reviewed	NA|1031aa|down_8|NC_014121.1_1254943_1258036_+	PRK09525, lacZ, beta-galactosidase	NA|268aa|down_9|NC_014121.1_1258069_1258873_-	PRK10019, PRK10019, nickel/cobalt efflux transporter RcnA
GCF_000025565.1_ASM2556v1	NC_014121	Enterobacter cloacae subsp. cloacae ATCC 13047, complete sequence	4	2752541-2752637	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG	Orphan	TGCACTACCCCCTAGTGAATCTCCTGCACTA	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG	NA,NA|61aa|down_1|NC_014121.1_2754259_2754442_-,NA|75aa|down_5|NC_014121.1_2756443_2756668_+,NA|136aa|down_6|NC_014121.1_2756660_2757068_+,NA|138aa|down_7|NC_014121.1_2757257_2757671_+,NA|193aa|down_8|NC_014121.1_2757670_2758249_+	NA|181aa|up_9|NC_014121.1_2741601_2742144_-	pfam07126, ZapC, Cell-division protein ZapC	NA|337aa|up_8|NC_014121.1_2742309_2743320_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|192aa|up_7|NC_014121.1_2743569_2744145_+	PRK10569, PRK10569, NAD(P)H-dependent FMN reductase; Provisional	NA|321aa|up_6|NC_014121.1_2744137_2745100_+	PRK11553, PRK11553, alkanesulfonate transporter substrate-binding subunit; Provisional	NA|382aa|up_5|NC_014121.1_2745096_2746242_+	PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional	NA|264aa|up_4|NC_014121.1_2746251_2747043_+	PRK11365, ssuC, aliphatic sulfonate ABC transporter permease SsuC	NA|257aa|up_3|NC_014121.1_2747039_2747810_+	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional	NA|871aa|up_2|NC_014121.1_2747861_2750474_-	PRK14015, pepN, aminopeptidase N; Provisional	NA|80aa|up_1|NC_014121.1_2750899_2751139_+	pfam06183, DinI, DinI-like family	NA|374aa|up_0|NC_014121.1_2751241_2752362_+	pfam13683, rve_3, Integrase core domain	NA|383aa|down_0|NC_014121.1_2753067_2754215_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|61aa|down_1|NC_014121.1_2754259_2754442_-	NA	NA|262aa|down_2|NC_014121.1_2754491_2755277_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|144aa|down_3|NC_014121.1_2755452_2755884_+	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed	NA|129aa|down_4|NC_014121.1_2755950_2756337_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|75aa|down_5|NC_014121.1_2756443_2756668_+	NA	NA|136aa|down_6|NC_014121.1_2756660_2757068_+	NA	NA|138aa|down_7|NC_014121.1_2757257_2757671_+	NA	NA|193aa|down_8|NC_014121.1_2757670_2758249_+	NA	NA|248aa|down_9|NC_014121.1_2758260_2759004_+	pfam10543, ORF6N, ORF6N domain
GCF_000025565.1_ASM2556v1	NC_014107	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence	1	48047-48181	1	CRISPRCasFinder	no	csa3	csa3	Type I-A	TGGAATATCGATTCCACACGCCGGATTTAACTGGGACCACGGTCCCAC	48	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG	NA|68aa|up_6|NC_014107.1_40630_40834_-,NA|97aa|up_5|NC_014107.1_41376_41667_+,NA|177aa|up_4|NC_014107.1_41797_42328_+,NA|88aa|down_4|NC_014107.1_51931_52195_+,NA|68aa|down_5|NC_014107.1_52223_52427_+,NA|156aa|down_6|NC_014107.1_52801_53269_+,NA|74aa|down_8|NC_014107.1_54480_54702_+	NA|79aa|up_9|NC_014107.1_37560_37797_+	PRK13747, PRK13747, putative mercury resistance protein; Provisional	NA|71aa|up_8|NC_014107.1_37862_38075_+	pfam11809, DUF3330, Domain of unknown function (DUF3330)	NA|405aa|up_7|NC_014107.1_39197_40411_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|68aa|up_6|NC_014107.1_40630_40834_-	NA	NA|97aa|up_5|NC_014107.1_41376_41667_+	NA	NA|177aa|up_4|NC_014107.1_41797_42328_+	NA	NA|259aa|up_3|NC_014107.1_42346_43123_+	pfam00589, Phage_integrase, Phage integrase family	NA|337aa|up_2|NC_014107.1_43825_44836_-	pfam01051, Rep_3, Initiator Replication protein	NA|389aa|up_1|NC_014107.1_45576_46743_+	PRK13705, PRK13705, plasmid-partitioning protein SopA; Provisional	NA|322aa|up_0|NC_014107.1_46742_47708_+	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein	NA|424aa|down_0|NC_014107.1_48357_49629_-	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|144aa|down_1|NC_014107.1_49628_50060_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|324aa|down_2|NC_014107.1_50291_51263_+	pfam06406, StbA, StbA protein	NA|221aa|down_3|NC_014107.1_51265_51928_+	pfam10784, Plasmid_stab_B, Plasmid stability protein	NA|88aa|down_4|NC_014107.1_51931_52195_+	NA	NA|68aa|down_5|NC_014107.1_52223_52427_+	NA	NA|156aa|down_6|NC_014107.1_52801_53269_+	NA	NA|231aa|down_7|NC_014107.1_53791_54484_+	PRK13699, PRK13699, putative methylase; Provisional	NA|74aa|down_8|NC_014107.1_54480_54702_+	NA	NA|141aa|down_9|NC_014107.1_54757_55180_+	pfam07128, DUF1380, Protein of unknown function (DUF1380)
