The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_013889	Thioalkalivibrio sp. K90mix, complete sequence	2744800	1138298	1213520	2744800	transposase,protease,tRNA,integrase	Bacillus_phage(20.0%)	59	1142112:1142127	1194075:1194090
WP_041444313.1|1138298_1140161_-|tRNA	tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD	tRNA	NA	NA	NA	NA
WP_041444202.1|1140218_1141589_-	peptidoglycan DD-metalloendopeptidase family protein	NA	I2E8W3	Clostridium_phage	43.8	5.3e-18
WP_012982484.1|1141853_1142636_-	ABC transporter permease	NA	NA	NA	NA	NA
1142112:1142127	attL	CGCGATGTCGTCGAAG	NA	NA	NA	NA
WP_012982485.1|1142632_1143610_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.7	1.8e-20
WP_012982486.1|1143698_1145090_+	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	37.9	6.1e-30
WP_012982487.1|1145099_1145903_-	creatininase family protein	NA	NA	NA	NA	NA
WP_012982488.1|1145935_1146724_-	FkbM family methyltransferase	NA	NA	NA	NA	NA
WP_012982489.1|1146813_1147974_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_012982490.1|1147987_1149964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982491.1|1149960_1150380_+	HIT family protein	NA	NA	NA	NA	NA
WP_012982492.1|1150386_1151037_-	OmpW family protein	NA	NA	NA	NA	NA
WP_012982493.1|1151129_1151834_-	SDR family NAD(P)-dependent oxidoreductase	NA	Q56AQ6	Bacillus_thuringiensis_phage	35.7	2.7e-26
WP_012982494.1|1151894_1153415_+	DUF1538 domain-containing protein	NA	NA	NA	NA	NA
WP_012982495.1|1153411_1153759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982496.1|1153772_1154165_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_012982497.1|1154233_1155508_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	32.1	4.8e-13
WP_012982498.1|1155587_1156349_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012982499.1|1156532_1157879_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	27.0	1.6e-27
WP_012982500.1|1157884_1159315_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.9	6.5e-51
WP_012982501.1|1159342_1162477_-	error-prone DNA polymerase	NA	M9MUV5	Rhodococcus_phage	28.6	3.6e-54
WP_012982502.1|1162590_1163202_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_148216244.1|1163234_1164406_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	45.3	1.3e-54
WP_041444204.1|1164955_1167247_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_012982504.1|1167776_1168934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041444315.1|1170076_1170292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982505.1|1170395_1170614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012982506.1|1170926_1172951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041444316.1|1174213_1176112_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012982508.1|1176133_1176424_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_012982509.1|1176511_1176784_-	HigA family addiction module antidote protein	NA	B0VK57	Azospirillum_phage	38.2	1.3e-05
WP_017940737.1|1178230_1178581_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_012982512.1|1178577_1178859_+	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	49.4	1.0e-13
WP_012981492.1|1179440_1180406_-|transposase	IS5 family transposase	transposase	E5E3P6	Burkholderia_phage	60.4	3.6e-106
WP_012982513.1|1181311_1182115_-	DUF3320 domain-containing protein	NA	NA	NA	NA	NA
WP_012982514.1|1182111_1183104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012982515.1|1183161_1183365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012982516.1|1183463_1183700_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_012982517.1|1183898_1184183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041444206.1|1184338_1184971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982519.1|1185101_1185728_+	porin family protein	NA	NA	NA	NA	NA
WP_012982520.1|1186158_1186485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982521.1|1186629_1187607_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	38.8	6.4e-18
WP_041444318.1|1187660_1189469_-	AAA family ATPase	NA	R4TQL5	Phaeocystis_globosa_virus	32.7	8.0e-06
WP_012982523.1|1189935_1190124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012982524.1|1190310_1191342_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_012982525.1|1191338_1191947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982526.1|1191967_1192669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982527.1|1192944_1193391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148216259.1|1193967_1195101_+	hypothetical protein	NA	NA	NA	NA	NA
1194075:1194090	attR	CTTCGACGACATCGCG	NA	NA	NA	NA
WP_012982529.1|1195162_1195942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982530.1|1195928_1196480_+	DUF1788 domain-containing protein	NA	NA	NA	NA	NA
WP_012981820.1|1199571_1200846_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.0	1.2e-85
WP_012982531.1|1201458_1202376_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_012982532.1|1202384_1205909_+	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_041444320.1|1206111_1207032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982534.1|1207025_1207793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982535.1|1207789_1210150_+	BREX-1 system phosphatase PglZ type B	NA	NA	NA	NA	NA
WP_012982536.1|1210149_1212198_+|protease	BREX system Lon protease-like protein BrxL	protease	NA	NA	NA	NA
WP_148216246.1|1212412_1213520_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_013889	Thioalkalivibrio sp. K90mix, complete sequence	2744800	1298085	1354154	2744800	transposase,protease,tRNA,terminase,integrase	Streptococcus_phage(16.67%)	55	1303860:1303907	1314249:1314296
WP_012982619.1|1298085_1298772_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_012982620.1|1298783_1300469_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_012982621.1|1300509_1300830_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_012982622.1|1300954_1301503_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_012982623.1|1301504_1302167_-	L-fuculose-phosphate aldolase	NA	NA	NA	NA	NA
WP_012982624.1|1302396_1302864_+	cytochrome c	NA	NA	NA	NA	NA
WP_049772257.1|1302906_1303794_+	cytochrome c	NA	NA	NA	NA	NA
1303860:1303907	attL	TGGCTCCCCGGGACGGGCTCGAACCGCCGACCTAGTGATTAACAGTCA	NA	NA	NA	NA
WP_012982626.1|1304067_1305342_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0P0IKP2	Acinetobacter_phage	28.6	7.5e-35
WP_012982627.1|1305338_1306022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982628.1|1306094_1306337_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012982630.1|1306760_1307642_+	hypothetical protein	NA	A0A0F7LAQ7	uncultured_marine_virus	70.4	5.9e-39
WP_012982631.1|1307638_1308997_+	replicative DNA helicase	NA	O80281	Escherichia_phage	45.5	3.4e-94
WP_012982632.1|1309013_1309238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982633.1|1309242_1309734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041444218.1|1309861_1310284_+	ATPase AAA	NA	NA	NA	NA	NA
WP_012982635.1|1310297_1310825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_168021572.1|1311503_1312022_+|terminase	terminase small subunit	terminase	NA	NA	NA	NA
WP_012982638.1|1312008_1312314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148216248.1|1312974_1313457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041444220.1|1314379_1315570_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
1314249:1314296	attR	TGGCTCCCCGGGACGGGCTCGAACCGCCGACCTAGTGATTAACAGTCA	NA	NA	NA	NA
WP_012982641.1|1315673_1317707_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_041444221.1|1317785_1318793_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_012982643.1|1318931_1319300_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_012982644.1|1319458_1320010_+	hypoxanthine-guanine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_012982645.1|1320023_1320776_+	S-methyl-5'-thioinosine phosphorylase	NA	NA	NA	NA	NA
WP_012982646.1|1320916_1321201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012982647.1|1321665_1322364_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012982648.1|1322586_1323948_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA	NA
WP_012982649.1|1324129_1325248_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_012982650.1|1325270_1325609_-	type IV pilus assembly PilZ	NA	NA	NA	NA	NA
WP_012982651.1|1325688_1326663_-	DNA-directed DNA polymerase	NA	M1NSC1	Streptococcus_phage	32.6	5.4e-09
WP_012982652.1|1326662_1327322_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	40.8	6.4e-30
WP_012982653.1|1327318_1328356_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_012982654.1|1328342_1329152_-	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_012982655.1|1329148_1330480_-	aminodeoxychorismate synthase component I	NA	NA	NA	NA	NA
WP_041444223.1|1330491_1331712_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_012982657.1|1331841_1332081_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	44.6	1.0e-09
WP_012982658.1|1332211_1332949_-	3-oxoacyl-ACP reductase FabG	NA	F2NZ40	Diadromus_pulchellus_ascovirus	29.4	3.7e-10
WP_012982659.1|1332995_1333940_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_012982660.1|1334146_1334365_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_012982661.1|1334472_1336740_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	1.2e-168
WP_012982662.1|1336745_1337072_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	41.9	8.7e-12
WP_012982663.1|1337215_1338472_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	63.0	2.3e-12
WP_012982664.1|1338597_1339059_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_012982665.1|1339055_1340177_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_012982666.1|1340230_1340860_+	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_012982667.1|1340876_1343624_+	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_012982668.1|1343639_1344032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012982669.1|1344028_1344868_+	HDOD domain-containing protein	NA	NA	NA	NA	NA
WP_012982670.1|1344913_1346863_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_012982671.1|1346866_1348255_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_012982672.1|1348372_1349740_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.4e-111
WP_012982673.1|1349743_1350901_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_083767892.1|1350908_1351886_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_012981820.1|1352879_1354154_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	45.0	1.2e-85
>prophage 3
NC_013889	Thioalkalivibrio sp. K90mix, complete sequence	2744800	1635740	1657120	2744800	transposase	Shigella_phage(33.33%)	17	NA	NA
WP_148216238.1|1635740_1636912_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	45.7	3.5e-55
WP_012982923.1|1637018_1638185_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012982924.1|1638465_1639017_-	sugar transferase	NA	NA	NA	NA	NA
WP_012982925.1|1639748_1640033_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012982926.1|1641345_1642329_-|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	31.2	7.1e-17
WP_012982927.1|1642657_1643617_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012982928.1|1643732_1644641_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_083767895.1|1644667_1645693_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_148216251.1|1645828_1646992_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_148216260.1|1647233_1648202_-	EpsG family protein	NA	NA	NA	NA	NA
WP_148216261.1|1648380_1649316_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_012982933.1|1649327_1650254_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_012982934.1|1650493_1651768_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	A0A218MKK1	uncultured_virus	23.4	1.8e-07
WP_041444246.1|1652137_1652821_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_041444247.1|1653511_1654195_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_041444247.1|1654974_1655658_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_041444248.1|1656436_1657120_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_013889	Thioalkalivibrio sp. K90mix, complete sequence	2744800	1773524	1824760	2744800	transposase,protease	Burkholderia_phage(37.5%)	50	NA	NA
WP_148216238.1|1773524_1774696_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	45.7	3.5e-55
WP_041444347.1|1774762_1775158_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_012983030.1|1775189_1776506_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_012983031.1|1776622_1776973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012983032.1|1777005_1777578_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_012983033.1|1777579_1778194_-	microcompartments protein	NA	NA	NA	NA	NA
WP_012983034.1|1778487_1779117_+	oxidase	NA	NA	NA	NA	NA
WP_012983035.1|1779153_1779348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012983036.1|1779415_1779601_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041444348.1|1779837_1781247_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_012983038.1|1781597_1782233_+	TMEM165/GDT1 family protein	NA	NA	NA	NA	NA
WP_012983039.1|1782882_1784904_+	site-specific recombinase	NA	NA	NA	NA	NA
WP_012983040.1|1784911_1785928_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012983041.1|1786050_1788651_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_012983042.1|1788728_1789106_+	HNH nuclease family protein	NA	NA	NA	NA	NA
WP_012983043.1|1789185_1789767_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012983044.1|1789979_1790426_+	host attachment protein	NA	NA	NA	NA	NA
WP_041444349.1|1790468_1791176_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_148216262.1|1791391_1792042_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_012983047.1|1792133_1792727_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_012983048.1|1792870_1793716_+|protease	proteasome-type protease	protease	NA	NA	NA	NA
WP_012983049.1|1793816_1794764_-	alpha-E domain-containing protein	NA	NA	NA	NA	NA
WP_012983050.1|1794765_1796214_-	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA	NA
WP_012983051.1|1796336_1796621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012983052.1|1796724_1797270_-	phosphatidylglycerophosphatase A	NA	NA	NA	NA	NA
WP_012983053.1|1797310_1798285_-	thiamine-phosphate kinase	NA	NA	NA	NA	NA
WP_012983054.1|1798307_1798871_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_012983055.1|1799137_1799623_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.6	1.9e-31
WP_020146480.1|1799720_1800314_-	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA	NA
WP_012983057.1|1800378_1801350_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_012983058.1|1801639_1801840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012983059.1|1801966_1802521_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_041444251.1|1802679_1803822_-	carotenoid 1,2-hydratase	NA	NA	NA	NA	NA
WP_012981642.1|1803862_1804855_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	31.8	8.2e-21
WP_012983061.1|1805139_1807680_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_012983062.1|1807676_1808405_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.8	3.6e-34
WP_012983063.1|1808829_1810188_+	magnesium transporter	NA	NA	NA	NA	NA
WP_012983064.1|1810199_1811558_+	magnesium transporter	NA	NA	NA	NA	NA
WP_012983065.1|1812514_1812820_+	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	51.9	2.4e-08
WP_012983066.1|1814884_1815484_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012983067.1|1815742_1816585_+	ion transporter	NA	NA	NA	NA	NA
WP_012983068.1|1817181_1817424_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_012983070.1|1817768_1818902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012983071.1|1820120_1820399_+	BrnT family toxin	NA	K4NX81	Burkholderia_phage	37.6	2.9e-08
WP_012983072.1|1820373_1820679_+	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	53.7	8.4e-09
WP_012983073.1|1820829_1821168_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012983068.1|1821246_1821489_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_012983074.1|1821488_1821911_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_012983075.1|1822664_1823507_+	ion transporter	NA	NA	NA	NA	NA
WP_012982455.1|1823767_1824760_+|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	32.1	3.7e-21
