assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025165.1_ASM2516v1	NC_013941	Escherichia coli O55:H7 str. CB9615, complete sequence	1	71451-71585	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|246aa|up_4|NC_013941.1_63419_64157_+,NA|190aa|down_7|NC_013941.1_80626_81196_+	NA|274aa|up_9|NC_013941.1_56560_57382_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NC_013941.1_57378_58368_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NC_013941.1_58367_59654_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|783aa|up_6|NC_013941.1_59706_62055_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NC_013941.1_62309_63125_+	PRK09430, djlA, co-chaperone DjlA	NA|246aa|up_4|NC_013941.1_63419_64157_+	NA	NA|220aa|up_3|NC_013941.1_64574_65234_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NC_013941.1_65245_68152_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NC_013941.1_68315_70667_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NC_013941.1_70741_71437_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NC_013941.1_71636_73139_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NC_013941.1_73149_74850_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NC_013941.1_75188_76067_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NC_013941.1_76152_76917_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NC_013941.1_77003_77702_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NC_013941.1_77685_79296_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NC_013941.1_79271_80255_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NC_013941.1_80626_81196_+	NA	NA|553aa|down_8|NC_013941.1_81424_83083_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NC_013941.1_83171_83303_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_000025165.1_ASM2516v1	NC_013941	Escherichia coli O55:H7 str. CB9615, complete sequence	2	3436173-3436386	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	GCCGGTTTATCCCCGCTGGCGCGGGGAACAC,GCCGGTTTATCCCCGCTGGCGCGGGGAACAC,GCCGGTTTATCCCCGCTGGCGCGGGGAACAC	31,31,31	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NC_013941.1_3427987_3428749_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_013941.1_3428729_3429779_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_013941.1_3429775_3430255_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_013941.1_3430254_3430965_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_013941.1_3430983_3431295_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_013941.1_3431488_3431812_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_013941.1_3431861_3432467_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_013941.1_3432466_3433894_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_013941.1_3433895_3434804_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_013941.1_3435055_3436093_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_013941.1_3436482_3436776_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NC_013941.1_3436772_3437696_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_013941.1_3437692_3438343_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_013941.1_3438324_3439071_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_013941.1_3439081_3440137_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NC_013941.1_3440148_3440685_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NC_013941.1_3440681_3442244_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NC_013941.1_3442341_3445041_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NC_013941.1_3445232_3445385_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NC_013941.1_3445648_3446383_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000025165.1_ASM2516v1	NC_013941	Escherichia coli O55:H7 str. CB9615, complete sequence	3	3462080-3462293	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GCGGTTTATCCCCGCTGGCGCGGGGAACTC,GCGGTTTATCCCCGCTGGCGCGGGGAACTC,GCGGTTTATCCCCGCTGGCGCGGGGAACTCT	30,30,31	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|37aa|up_1|NC_013941.1_3459828_3459939_+,NA	NA|424aa|up_9|NC_013941.1_3450726_3451998_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_013941.1_3451988_3452249_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_013941.1_3452265_3452841_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_6|NC_013941.1_3453845_3454625_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_5|NC_013941.1_3454602_3456012_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_4|NC_013941.1_3456033_3457488_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_3|NC_013941.1_3457557_3458343_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|377aa|up_2|NC_013941.1_3458661_3459792_+	cd06174, MFS, Major Facilitator Superfamily	NA|37aa|up_1|NC_013941.1_3459828_3459939_+	NA	NA|493aa|up_0|NC_013941.1_3459965_3461444_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_013941.1_3462631_3463303_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NC_013941.1_3463457_3464078_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|298aa|down_2|NC_013941.1_3464091_3464985_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NC_013941.1_3464999_3466148_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NC_013941.1_3466144_3467059_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NC_013941.1_3467118_3468417_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NC_013941.1_3468504_3470142_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NC_013941.1_3470369_3471161_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NC_013941.1_3471231_3471567_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NC_013941.1_3471566_3471815_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_000025165.1_ASM2516v1	NC_013941	Escherichia coli O55:H7 str. CB9615, complete sequence	4	5188346-5188495	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|627aa|up_6|NC_013941.1_5179367_5181248_+,NA	NA|238aa|up_9|NC_013941.1_5177270_5177984_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NC_013941.1_5178054_5178648_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NC_013941.1_5178792_5179245_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|627aa|up_6|NC_013941.1_5179367_5181248_+	NA	NA|335aa|up_5|NC_013941.1_5181304_5182309_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NC_013941.1_5182470_5182887_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NC_013941.1_5182932_5183436_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NC_013941.1_5183628_5184825_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NC_013941.1_5184879_5187735_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NC_013941.1_5187734_5188178_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NC_013941.1_5188531_5190043_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NC_013941.1_5190309_5191410_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NC_013941.1_5191409_5192492_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NC_013941.1_5192652_5194155_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NC_013941.1_5194284_5195304_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|276aa|down_5|NC_013941.1_5195784_5196612_+	PRK09692, PRK09692, integrase; Provisional	NA|284aa|down_6|NC_013941.1_5197071_5197923_-	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|368aa|down_7|NC_013941.1_5198463_5199567_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|236aa|down_8|NC_013941.1_5199570_5200278_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|551aa|down_9|NC_013941.1_5200284_5201937_-	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family
