assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	1	29464-29929	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Type III-A,Type III-B,Type III-D,Type III-C	AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC,AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC,AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA|118aa|down_0|NC_013893.1_30122_30476_+,NA|109aa|down_8|NC_013893.1_44944_45271_+,NA|96aa|down_9|NC_013893.1_45273_45561_+	NA|292aa|up_9|NC_013893.1_19344_20220_-	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	cas1|302aa|up_8|NC_013893.1_20724_21630_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_7|NC_013893.1_21629_21935_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|up_6|NC_013893.1_21950_24224_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_5|NC_013893.1_24225_24651_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|215aa|up_4|NC_013893.1_24652_25297_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_3|NC_013893.1_25307_26216_+	TIGR01903, Hypothetical_protein	csm5gr7|337aa|up_2|NC_013893.1_26219_27230_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|113aa|up_1|NC_013893.1_28189_28528_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|251aa|up_0|NC_013893.1_28524_29277_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|118aa|down_0|NC_013893.1_30122_30476_+	NA	NA|209aa|down_1|NC_013893.1_30828_31455_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|2394aa|down_2|NC_013893.1_31451_38633_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|262aa|down_3|NC_013893.1_40077_40863_+	pfam04507, DUF576, Csa1 family	NA|256aa|down_4|NC_013893.1_40953_41721_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_5|NC_013893.1_41790_42576_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_6|NC_013893.1_42837_43623_+	pfam04507, DUF576, Csa1 family	NA|442aa|down_7|NC_013893.1_43619_44945_+	cd00519, Lipase_3, Lipase (class 3)	NA|109aa|down_8|NC_013893.1_44944_45271_+	NA	NA|96aa|down_9|NC_013893.1_45273_45561_+	NA
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	2	401141-401224	2	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	AACCCCAACTTGCTTTGCTTGGCGAA	26	1	5	401167-401198|401167-401198|401167-401198|401167-401198|401167-401198	NC_013893.1_252277-252246|NC_013893.1_252334-252303|NC_013893.1_473008-472977|NC_013893.1_1553664-1553695|NC_013893.1_2492223-2492192	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|260aa|up_9|NC_013893.1_389820_390600_+	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase	NA|204aa|up_8|NC_013893.1_390620_391232_+	PRK06718, PRK06718, NAD(P)-binding protein	NA|300aa|up_7|NC_013893.1_391249_392149_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|393aa|up_6|NC_013893.1_392171_393350_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|200aa|up_5|NC_013893.1_393366_393966_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|407aa|up_4|NC_013893.1_394270_395491_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|257aa|up_3|NC_013893.1_395879_396650_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|616aa|up_2|NC_013893.1_396848_398696_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|179aa|up_1|NC_013893.1_398697_399234_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|431aa|up_0|NC_013893.1_399590_400883_+	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|542aa|down_0|NC_013893.1_401805_403431_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|187aa|down_1|NC_013893.1_403483_404044_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|497aa|down_2|NC_013893.1_404411_405902_+	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like	NA|569aa|down_3|NC_013893.1_405993_407700_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|393aa|down_4|NC_013893.1_407947_409126_+	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|90aa|down_5|NC_013893.1_409264_409534_+	pfam06855, YozE_SAM_like, YozE SAM-like fold	NA|150aa|down_6|NC_013893.1_409523_409973_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|531aa|down_7|NC_013893.1_410609_412202_+	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|875aa|down_8|NC_013893.1_412450_415075_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|272aa|down_9|NC_013893.1_415079_415895_+	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	3	582073-582154	3	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	GCAAGTTGGGGTGGGGCCCCAACAAA	26	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA|64aa|up_8|NC_013893.1_571164_571356_+,NA|508aa|down_5|NC_013893.1_587944_589468_+	NA|451aa|up_9|NC_013893.1_569628_570981_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|64aa|up_8|NC_013893.1_571164_571356_+	NA	NA|89aa|up_7|NC_013893.1_571510_571777_-	pfam07205, DUF1413, Domain of unknown function (DUF1413)	NA|232aa|up_6|NC_013893.1_571931_572627_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|412aa|up_5|NC_013893.1_572826_574062_+	PRK08596, PRK08596, acetylornithine deacetylase; Validated	NA|722aa|up_4|NC_013893.1_574444_576610_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|513aa|up_3|NC_013893.1_576702_578241_-	TIGR03706, exo_poly_only, exopolyphosphatase	NA|516aa|up_2|NC_013893.1_578550_580098_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|359aa|up_1|NC_013893.1_580332_581409_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|152aa|up_0|NC_013893.1_581574_582030_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|427aa|down_0|NC_013893.1_582400_583681_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|277aa|down_1|NC_013893.1_584210_585041_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|269aa|down_2|NC_013893.1_585037_585844_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|258aa|down_3|NC_013893.1_585845_586619_-	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein	NA|318aa|down_4|NC_013893.1_586744_587698_-	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|508aa|down_5|NC_013893.1_587944_589468_+	NA	NA|513aa|down_6|NC_013893.1_589484_591023_+	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|526aa|down_7|NC_013893.1_591274_592852_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|255aa|down_8|NC_013893.1_593167_593932_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|260aa|down_9|NC_013893.1_593954_594734_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	4	702542-702690	2	PILER-CR	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	TTTGTTGGGGCCCCACCCCAACTTGCTTTGTCCGTTGCCTTTCTTTTG	48	1	4	702599-702615|702599-702615|702599-702615|702599-702615	NC_013893.1_984178-984194|NC_013893.1_2526642-2526658|NC_013893.1_2526699-2526715|NC_013893.1_2214913-2214897	NA	2	2	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA|126aa|down_2|NC_013893.1_705700_706078_-,NA|71aa|down_3|NC_013893.1_706095_706308_-,NA|262aa|down_9|NC_013893.1_712706_713492_-	NA|151aa|up_9|NC_013893.1_690821_691274_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|572aa|up_8|NC_013893.1_691286_693002_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|136aa|up_7|NC_013893.1_693001_693409_-	PRK13201, ureB, urease subunit beta; Reviewed	NA|101aa|up_6|NC_013893.1_693421_693724_-	PRK13241, ureA, urease subunit gamma; Provisional	NA|299aa|up_5|NC_013893.1_693932_694829_+	TIGR03441, urea_trans_yut, urea transporter, Yersinia type	NA|196aa|up_4|NC_013893.1_695048_695636_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|592aa|up_3|NC_013893.1_695839_697615_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|579aa|up_2|NC_013893.1_698332_700069_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|302aa|up_1|NC_013893.1_700623_701529_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|215aa|up_0|NC_013893.1_701759_702404_+	TIGR01218, conserved_hypothetical_protein, tandem five-transmembrane protein	NA|211aa|down_0|NC_013893.1_702926_703559_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|538aa|down_1|NC_013893.1_703886_705500_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|126aa|down_2|NC_013893.1_705700_706078_-	NA	NA|71aa|down_3|NC_013893.1_706095_706308_-	NA	NA|212aa|down_4|NC_013893.1_707286_707922_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|382aa|down_5|NC_013893.1_708129_709275_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|284aa|down_6|NC_013893.1_709417_710269_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|177aa|down_7|NC_013893.1_710312_710843_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|204aa|down_8|NC_013893.1_711269_711881_-	pfam01381, HTH_3, Helix-turn-helix	NA|262aa|down_9|NC_013893.1_712706_713492_-	NA
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	5	755265-755351	4	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	GCAAGTTGGGGTGGGGCCCCAACACAAAGA	30	1	2	755295-755321|755295-755321	NC_013893.1_177371-177397|NC_013893.1_798116-798142	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA|130aa|down_2|NC_013893.1_757413_757803_-	NA|225aa|up_9|NC_013893.1_744482_745157_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|354aa|up_8|NC_013893.1_745284_746346_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|223aa|up_7|NC_013893.1_746342_747011_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|318aa|up_6|NC_013893.1_747101_748055_-	cd06259, YdcF-like, YdcF-like	NA|154aa|up_5|NC_013893.1_748230_748692_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|458aa|up_4|NC_013893.1_748789_750163_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|402aa|up_3|NC_013893.1_750264_751470_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|184aa|up_2|NC_013893.1_751911_752463_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_1|NC_013893.1_752595_753243_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|655aa|up_0|NC_013893.1_753255_755220_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|236aa|down_0|NC_013893.1_755556_756264_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|303aa|down_1|NC_013893.1_756472_757381_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|130aa|down_2|NC_013893.1_757413_757803_-	NA	NA|156aa|down_3|NC_013893.1_757808_758276_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|316aa|down_4|NC_013893.1_758394_759342_+	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family	NA|351aa|down_5|NC_013893.1_759387_760440_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|203aa|down_6|NC_013893.1_760564_761173_-	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|65aa|down_7|NC_013893.1_761431_761626_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|337aa|down_8|NC_013893.1_762180_763191_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|218aa|down_9|NC_013893.1_763266_763920_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	6	791221-791300	5	CRISPRCasFinder	no	WYL	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Unclear	TCGATCAAAGCAAGTTGGGGTGG	23	1	5	791244-791277|791244-791277|791244-791277|791244-791277|791244-791277	NC_013893.1_2161047-2161080|NC_013893.1_9104-9071|NC_013893.1_1072455-1072422|NC_013893.1_1233598-1233631|NC_013893.1_1828714-1828747	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA|78aa|up_1|NC_013893.1_789821_790055_+,NA	NA|463aa|up_9|NC_013893.1_779485_780874_-	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|296aa|up_8|NC_013893.1_780887_781775_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|350aa|up_7|NC_013893.1_781771_782821_-	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	WYL|230aa|up_6|NC_013893.1_782989_783679_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|259aa|up_5|NC_013893.1_784069_784846_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|317aa|up_4|NC_013893.1_784964_785915_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|985aa|up_3|NC_013893.1_786214_789169_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|157aa|up_2|NC_013893.1_789168_789639_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|78aa|up_1|NC_013893.1_789821_790055_+	NA	NA|258aa|up_0|NC_013893.1_790074_790848_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|318aa|down_0|NC_013893.1_791572_792526_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|105aa|down_1|NC_013893.1_792594_792909_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|111aa|down_2|NC_013893.1_792908_793241_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|179aa|down_3|NC_013893.1_793653_794190_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|141aa|down_4|NC_013893.1_794488_794911_-	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|358aa|down_5|NC_013893.1_795142_796216_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|464aa|down_6|NC_013893.1_796258_797650_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|246aa|down_7|NC_013893.1_798303_799041_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|247aa|down_8|NC_013893.1_801624_802365_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|107aa|down_9|NC_013893.1_802394_802715_+	pfam14470, bPH_3, Bacterial PH domain
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	7	1277420-1277510	6	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	AAACTCGCCATGCTCGTTAAGTGC	24	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|410aa|up_9|NC_013893.1_1263767_1264997_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|up_8|NC_013893.1_1265085_1265943_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|up_7|NC_013893.1_1265944_1266889_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|up_6|NC_013893.1_1267051_1268020_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|587aa|up_5|NC_013893.1_1268037_1269798_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|453aa|up_4|NC_013893.1_1270351_1271710_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|373aa|up_3|NC_013893.1_1272056_1273175_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|up_2|NC_013893.1_1273222_1274491_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|237aa|up_1|NC_013893.1_1274694_1275405_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|570aa|up_0|NC_013893.1_1275404_1277114_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|878aa|down_0|NC_013893.1_1277557_1280191_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|291aa|down_1|NC_013893.1_1280207_1281080_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|202aa|down_2|NC_013893.1_1281095_1281701_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|334aa|down_3|NC_013893.1_1281847_1282849_+	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|336aa|down_4|NC_013893.1_1283023_1284031_+	PRK06256, PRK06256, biotin synthase; Validated	NA|157aa|down_5|NC_013893.1_1284347_1284818_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|459aa|down_6|NC_013893.1_1284818_1286195_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|307aa|down_7|NC_013893.1_1286194_1287115_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|646aa|down_8|NC_013893.1_1287474_1289412_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|498aa|down_9|NC_013893.1_1289875_1291369_+	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	8	1847877-1847963	7	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	TGTTGGGGCCCCACCCCAACTCGCGTTGTT	30	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|272aa|up_9|NC_013893.1_1838097_1838913_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|204aa|up_8|NC_013893.1_1839095_1839707_+	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|451aa|up_7|NC_013893.1_1839968_1841321_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|152aa|up_6|NC_013893.1_1841583_1842039_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|349aa|up_5|NC_013893.1_1842170_1843217_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|358aa|up_4|NC_013893.1_1843289_1844363_-	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|271aa|up_3|NC_013893.1_1844359_1845172_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|266aa|up_2|NC_013893.1_1845177_1845975_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|365aa|up_1|NC_013893.1_1845967_1847062_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|180aa|up_0|NC_013893.1_1847076_1847616_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|96aa|down_0|NC_013893.1_1848001_1848289_-	PRK04387, PRK04387, hypothetical protein; Provisional	NA|469aa|down_1|NC_013893.1_1848492_1849899_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|435aa|down_2|NC_013893.1_1849902_1851207_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|326aa|down_3|NC_013893.1_1851419_1852397_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|371aa|down_4|NC_013893.1_1852400_1853513_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|210aa|down_5|NC_013893.1_1853679_1854309_-	pfam10368, YkyA, Putative cell-wall binding lipoprotein	NA|184aa|down_6|NC_013893.1_1854446_1854998_+	PRK00150, def, peptide deformylase; Reviewed	NA|73aa|down_7|NC_013893.1_1855432_1855651_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|560aa|down_8|NC_013893.1_1855650_1857330_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|220aa|down_9|NC_013893.1_1857924_1858584_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	9	1940676-1940770	8	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC	35	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA|116aa|up_3|NC_013893.1_1938039_1938387_-,NA	NA|257aa|up_9|NC_013893.1_1931388_1932159_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI	NA|615aa|up_8|NC_013893.1_1932446_1934291_-	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	NA|462aa|up_7|NC_013893.1_1934301_1935687_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|285aa|up_6|NC_013893.1_1935712_1936567_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|270aa|up_5|NC_013893.1_1936563_1937373_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|212aa|up_4|NC_013893.1_1937387_1938023_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|116aa|up_3|NC_013893.1_1938039_1938387_-	NA	NA|191aa|up_2|NC_013893.1_1938580_1939153_+	COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_1|NC_013893.1_1939252_1939618_+	COG2346, COG2346, Truncated hemoglobins [General function prediction only]	NA|266aa|up_0|NC_013893.1_1939640_1940438_+	pfam13743, Thioredoxin_5, Thioredoxin	NA|603aa|down_0|NC_013893.1_1941084_1942893_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|324aa|down_1|NC_013893.1_1942944_1943916_-	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|244aa|down_2|NC_013893.1_1944016_1944748_-	PRK02315, PRK02315, adaptor protein MecA	NA|132aa|down_3|NC_013893.1_1944968_1945364_-	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|330aa|down_4|NC_013893.1_1945651_1946641_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|252aa|down_5|NC_013893.1_1946827_1947583_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|551aa|down_6|NC_013893.1_1947791_1949444_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|314aa|down_7|NC_013893.1_1949469_1950411_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|361aa|down_8|NC_013893.1_1950400_1951483_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|355aa|down_9|NC_013893.1_1951497_1952562_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	10	2184244-2184323	9	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	CCAAGCAAAGCAAGTTGGGGTGG	23	1	4	2184267-2184300|2184267-2184300|2184267-2184300|2184267-2184300	NC_013893.1_9104-9071|NC_013893.1_1233598-1233631|NC_013893.1_1053967-1054000|NC_013893.1_1072455-1072422	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|261aa|up_9|NC_013893.1_2172077_2172860_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|320aa|up_8|NC_013893.1_2172856_2173816_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|326aa|up_7|NC_013893.1_2173796_2174774_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|323aa|up_6|NC_013893.1_2175141_2176110_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|702aa|up_5|NC_013893.1_2176349_2178455_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|133aa|up_4|NC_013893.1_2178417_2178816_-	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|290aa|up_3|NC_013893.1_2179689_2180559_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|167aa|up_2|NC_013893.1_2180571_2181072_+	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional	NA|502aa|up_1|NC_013893.1_2181356_2182862_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|305aa|up_0|NC_013893.1_2183189_2184104_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|177aa|down_0|NC_013893.1_2184477_2185008_-	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|352aa|down_1|NC_013893.1_2185245_2186301_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|505aa|down_2|NC_013893.1_2186423_2187938_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|505aa|down_3|NC_013893.1_2188218_2189733_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|323aa|down_4|NC_013893.1_2189729_2190698_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|594aa|down_5|NC_013893.1_2190914_2192696_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|628aa|down_6|NC_013893.1_2192709_2194593_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|272aa|down_7|NC_013893.1_2194704_2195520_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|646aa|down_8|NC_013893.1_2195687_2197625_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|335aa|down_9|NC_013893.1_2198175_2199180_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
GCF_000025085.1_ASM2508v1	NC_013893	Staphylococcus lugdunensis HKU09-01, complete sequence	11	2323479-2323569	10	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	Orphan	GATGATACAAATGATTTAACAGCGC	25	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,cas3,DinG	NA|114aa|up_9|NC_013893.1_2312213_2312555_-,NA|92aa|up_8|NC_013893.1_2312836_2313112_-,NA|49aa|up_3|NC_013893.1_2318318_2318465_-,NA|366aa|up_1|NC_013893.1_2320663_2321761_-,NA|122aa|down_0|NC_013893.1_2326420_2326786_-,NA|129aa|down_3|NC_013893.1_2327851_2328238_-,NA|101aa|down_5|NC_013893.1_2328589_2328892_-,NA|80aa|down_7|NC_013893.1_2329227_2329467_-,NA|302aa|down_8|NC_013893.1_2329481_2330387_-	NA|114aa|up_9|NC_013893.1_2312213_2312555_-	NA	NA|92aa|up_8|NC_013893.1_2312836_2313112_-	NA	NA|489aa|up_7|NC_013893.1_2313305_2314772_-	pfam08460, SH3_5, Bacterial SH3 domain	NA|150aa|up_6|NC_013893.1_2314774_2315224_-	TIGR01598, holin_phiLC3, holin, phage phi LC3 family	NA|854aa|up_5|NC_013893.1_2315280_2317842_-	cd01825, SGNH_hydrolase_peri1, SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases	NA|99aa|up_4|NC_013893.1_2317989_2318286_-	pfam11166, DUF2951, Protein of unknown function (DUF2951)	NA|49aa|up_3|NC_013893.1_2318318_2318465_-	NA	NA|728aa|up_2|NC_013893.1_2318461_2320645_-	pfam06605, Prophage_tail, Prophage endopeptidase tail	NA|366aa|up_1|NC_013893.1_2320663_2321761_-	NA	NA|318aa|up_0|NC_013893.1_2321777_2322731_-	pfam05709, Sipho_tail, Phage tail protein	NA|122aa|down_0|NC_013893.1_2326420_2326786_-	NA	NA|122aa|down_1|NC_013893.1_2326830_2327196_-	pfam12363, Phage_TAC_12, Phage tail assembly chaperone protein, TAC	NA|188aa|down_2|NC_013893.1_2327270_2327834_-	pfam06199, Phage_tail_2, Phage tail tube protein	NA|129aa|down_3|NC_013893.1_2327851_2328238_-	NA	NA|114aa|down_4|NC_013893.1_2328248_2328590_-	TIGR01725, hypothetical_protein, phage protein, HK97 gp10 family	NA|101aa|down_5|NC_013893.1_2328589_2328892_-	NA	NA|110aa|down_6|NC_013893.1_2328888_2329218_-	pfam05135, Phage_connect_1, Phage gp6-like head-tail connector protein	NA|80aa|down_7|NC_013893.1_2329227_2329467_-	NA	NA|302aa|down_8|NC_013893.1_2329481_2330387_-	NA	NA|197aa|down_9|NC_013893.1_2330406_2330997_-	pfam14265, DUF4355, Domain of unknown function (DUF4355)
