The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_013960	Nitrosococcus halophilus Nc 4, complete sequence	4079427	37080	46086	4079427	tRNA	uncultured_Caudovirales_phage(42.86%)	9	NA	NA
WP_013031150.1|37080_38088_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.1	1.7e-106
WP_013031151.1|38359_38575_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_013031152.1|38614_39085_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	7.6e-25
WP_013031153.1|39192_40908_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.7	3.9e-71
WP_013031154.1|41042_42851_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	35.3	1.5e-36
WP_157862444.1|43549_43987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049780559.1|44750_45131_+	hypothetical protein	NA	A0A2H4J9S8	uncultured_Caudovirales_phage	48.8	3.4e-23
WP_013031157.1|45123_45558_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J1D2	uncultured_Caudovirales_phage	57.3	3.7e-18
WP_013031158.1|45561_46086_+	hypothetical protein	NA	A0A2H4J2Z0	uncultured_Caudovirales_phage	34.0	2.0e-18
>prophage 2
NC_013960	Nitrosococcus halophilus Nc 4, complete sequence	4079427	363316	442460	4079427	transposase	Phage_Gifsy-1(13.33%)	51	NA	NA
WP_013031461.1|363316_364474_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	43.7	1.2e-79
WP_013031462.1|364743_365907_-	inositol-3-phosphate synthase	NA	A0A0H4IPK5	Stenotrophomonas_phage	47.6	1.3e-89
WP_013031463.1|366196_367405_-	sorbosone dehydrogenase family protein	NA	NA	NA	NA	NA
WP_013031465.1|370020_372249_+	oligosaccharyl transferase STT3 subunit	NA	NA	NA	NA	NA
WP_013031466.1|372592_373969_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_013031467.1|374032_374989_+	glycosyltransferase family 2 protein	NA	B9UDL7	Salmonella_phage	27.0	6.5e-07
WP_013031468.1|374975_376241_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_013031469.1|376237_376963_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_157862464.1|376981_378001_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_013031471.1|378014_379235_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_049780566.1|379484_384515_+	FkbM family methyltransferase	NA	A0A0N9QZQ5	Chrysochromulina_ericina_virus	27.6	4.3e-41
WP_013031473.1|384615_385425_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_013031474.1|385801_386689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013031477.1|388329_388575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013031478.1|388604_391280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013031479.1|391313_392339_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA	K7Y9E1	Megavirus	34.6	1.8e-39
WP_013031480.1|392372_393275_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_013031482.1|393596_394757_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	A0A2K9L0G1	Tupanvirus	35.3	2.6e-34
WP_013031483.1|394753_395479_+	pseudaminic acid cytidylyltransferase	NA	A0A1B1IVD3	uncultured_Mediterranean_phage	35.5	2.3e-12
WP_013031484.1|395475_396984_+	UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase	NA	NA	NA	NA	NA
WP_013031485.1|396987_398043_+	pseudaminic acid synthase	NA	NA	NA	NA	NA
WP_013031486.1|398058_399084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013031487.1|399107_400331_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.5	2.8e-47
WP_013031488.1|400327_401266_+	heparinase II/III-family protein	NA	NA	NA	NA	NA
WP_013031489.1|402175_403738_+	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	25.0	1.4e-27
WP_013031490.1|404071_405814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013031491.1|405856_410635_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_013031492.1|410889_411315_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_041355313.1|411904_413401_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_013031495.1|413445_413847_-	DoxX family protein	NA	NA	NA	NA	NA
WP_013031496.1|414016_417178_+	DUF5110 domain-containing protein	NA	NA	NA	NA	NA
WP_083761350.1|417442_418372_-	DUF2914 domain-containing protein	NA	NA	NA	NA	NA
WP_041355321.1|418700_422549_+	DUF3683 domain-containing protein	NA	NA	NA	NA	NA
WP_013031499.1|422637_423099_-	DUF4124 domain-containing protein	NA	NA	NA	NA	NA
WP_013031500.1|423584_425012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041354569.1|425130_425640_+	FMN-binding protein	NA	NA	NA	NA	NA
WP_013031502.1|425639_426620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013031503.1|426690_427221_+	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
WP_013031504.1|427261_428737_+	cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_013031505.1|429006_429633_+	SCO family protein	NA	NA	NA	NA	NA
WP_013031506.1|429622_430231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013031507.1|430308_430770_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_013031508.1|430886_434549_-	5-oxoprolinase	NA	NA	NA	NA	NA
WP_013031509.1|434790_435948_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	43.4	6.5e-78
WP_013031510.1|436565_436850_+	HU family DNA-binding protein	NA	B5TA87	Burkholderia_phage	51.7	6.6e-16
WP_013031511.1|437126_437555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049780568.1|437709_438540_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	39.6	2.7e-25
WP_013031487.1|438863_440087_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.5	2.8e-47
WP_013031513.1|440193_440682_+	zinc transporter ZupT	NA	NA	NA	NA	NA
WP_041355331.1|440713_441328_+|transposase	IS607 family transposase	transposase	A0A7Q0	Microcystis_virus	60.1	3.0e-58
WP_013031515.1|441305_442460_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A2I7RIF3	Vibrio_phage	47.3	7.0e-72
>prophage 3
NC_013960	Nitrosococcus halophilus Nc 4, complete sequence	4079427	943298	1002599	4079427	terminase,integrase,portal,transposase,tRNA	Pseudomonas_phage(10.26%)	80	961760:961804	1007231:1007275
WP_041354644.1|943298_944231_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.5	5.9e-29
WP_013031998.1|944311_944794_+	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
WP_013031999.1|944808_945546_+	DsbC family protein	NA	NA	NA	NA	NA
WP_013032000.1|945556_946312_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_013032001.1|946327_946921_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	32.3	5.4e-12
WP_013032002.1|947069_948497_+|tRNA	glutamate--tRNA ligase	tRNA	A0A2K9L594	Tupanvirus	37.9	6.3e-06
WP_013032003.1|948604_950059_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.4	3.9e-43
WP_013032004.1|950229_951084_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	34.1	6.4e-30
WP_083761357.1|951491_952115_-|integrase	site-specific integrase	integrase	Q9T1P3	Pseudomonas_phage	59.4	1.9e-55
WP_013032005.1|952144_953368_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	44.9	2.4e-46
WP_041355411.1|953732_953972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032007.1|953968_954178_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_013032008.1|954192_954561_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_013032009.1|954564_954867_+	BrnA antitoxin family protein	NA	K4NZP3	Burkholderia_phage	48.6	2.8e-12
WP_013032010.1|954863_955112_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_013032011.1|955128_955329_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_013032012.1|955387_956539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032013.1|956535_957033_-	DUF4365 domain-containing protein	NA	NA	NA	NA	NA
WP_013032014.1|957296_957524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049780580.1|957525_958242_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013032016.1|958372_958618_+	helix-turn-helix domain-containing protein	NA	A0A2D1GMR4	Marinobacter_phage	39.7	7.7e-05
WP_013032017.1|958614_958803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032018.1|958799_959072_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013032019.1|959268_959493_+	KilA-N domain-containing protein	NA	K7P7K9	Enterobacteria_phage	44.0	3.4e-07
WP_013031487.1|959555_960779_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.5	2.8e-47
WP_013032020.1|960739_961045_-	hypothetical protein	NA	NA	NA	NA	NA
961760:961804	attL	CTCTTAATCAGTAGGTTCAAGGTTCGAGTCCTTGATGGCCCACCA	NA	NA	NA	NA
WP_013032021.1|961874_962837_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	36.9	7.9e-37
WP_013032022.1|962820_963039_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_013032023.1|963095_963917_-	DUF2303 family protein	NA	I6NVL7	Burkholderia_virus	34.9	8.3e-35
WP_013032024.1|963920_964265_-	hypothetical protein	NA	I6XKT1	Burkholderia_virus	49.5	3.0e-15
WP_013032025.1|964279_964486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032026.1|964482_964668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032027.1|964664_964973_-	DUF4326 domain-containing protein	NA	A0A2K9VA45	Escherichia_phage	50.5	1.4e-19
WP_013032029.1|965678_966296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032030.1|966292_966511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157862621.1|966587_966992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157862480.1|966979_967141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032033.1|967433_967721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157862622.1|967755_968019_+	hypothetical protein	NA	K4NZP3	Burkholderia_phage	36.9	4.9e-05
WP_041354648.1|968425_969115_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_013032037.1|969116_969335_+	helix-turn-helix domain-containing protein	NA	A0A291AXF0	Shigella_phage	41.9	8.9e-05
WP_013032038.1|969331_969529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032039.1|969525_969798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032040.1|969907_970255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032041.1|970258_970426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032043.1|970729_973162_+	hypothetical protein	NA	B7SYD0	Stenotrophomonas_phage	48.8	1.6e-227
WP_013032045.1|973483_973681_+	hypothetical protein	NA	A0A2K8HNL2	Pseudomonas_phage	55.2	1.5e-11
WP_157862481.1|973823_974363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049780581.1|974363_975425_+	hypothetical protein	NA	B6SD57	Bacteriophage	51.3	2.3e-29
WP_013032048.1|975533_976484_+	BRO domain-containing protein	NA	A0A0B5A507	Paenibacillus_phage	53.2	2.1e-29
WP_013032049.1|976485_978444_+|terminase	phage terminase large subunit family protein	terminase	B7SYD3	Stenotrophomonas_phage	60.5	1.5e-215
WP_157862482.1|978425_978734_+	hypothetical protein	NA	A0A2I7RUR8	Vibrio_phage	57.1	3.1e-19
WP_013032051.1|978764_979052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032052.1|979341_979527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032053.1|979555_980101_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_013032054.1|980163_980523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032055.1|980714_981590_-	DNA adenine methylase	NA	A0A2H4UUI2	Bodo_saltans_virus	25.8	4.7e-12
WP_157862623.1|981614_983060_-	hypothetical protein	NA	Q858T2	Yersinia_virus	26.7	2.5e-10
WP_013032057.1|983401_984463_+	ORF6N domain-containing protein	NA	A0A0H3UZF1	Geobacillus_virus	47.4	9.1e-18
WP_013032058.1|984552_984993_+	DUF29 domain-containing protein	NA	A0JC30	Ralstonia_phage	44.7	1.5e-22
WP_041355420.1|985192_985405_+	hypothetical protein	NA	A0A0A0YRQ0	Pseudomonas_phage	55.6	7.1e-07
WP_013032060.1|985404_985821_+	glycoside hydrolase family protein	NA	A0A1Q1PW74	Pseudoalteromonas_phage	59.5	6.9e-38
WP_013032061.1|985817_987296_+|portal	phage portal protein	portal	A0A0A0YUB7	Pseudomonas_phage	44.7	7.0e-109
WP_157862483.1|987391_989659_+	hypothetical protein	NA	B7SYD7	Stenotrophomonas_phage	43.1	1.1e-73
WP_013032063.1|989665_990079_+	hypothetical protein	NA	A0A2I7QU26	Vibrio_phage	33.1	7.1e-11
WP_013032064.1|990084_990447_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_013032065.1|990446_990752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032066.1|990744_991044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032067.1|991043_991655_+	hypothetical protein	NA	A0A2D1GMQ3	Marinobacter_phage	33.3	1.9e-07
WP_013032068.1|991651_992092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032069.1|992148_992310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032070.1|992382_993129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032071.1|993159_996453_+	hypothetical protein	NA	A0A2I7R3B9	Vibrio_phage	40.2	4.7e-28
WP_013032072.1|996469_996802_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	54.1	1.4e-20
WP_013032073.1|996785_997040_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	58.3	8.8e-20
WP_013032074.1|997109_997493_+	hypothetical protein	NA	A0A0M4UTA7	Ralstonia_phage	45.2	1.1e-18
WP_013032075.1|997493_1000835_+	hypothetical protein	NA	A0A0M4U447	Ralstonia_phage	37.0	1.5e-196
WP_013032076.1|1000831_1001926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032077.1|1001922_1002213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032078.1|1002209_1002599_+	hypothetical protein	NA	Q6VSZ7	Vibrio_phage	30.3	5.7e-10
1007231:1007275	attR	CTCTTAATCAGTAGGTTCAAGGTTCGAGTCCTTGATGGCCCACCA	NA	NA	NA	NA
>prophage 5
NC_013960	Nitrosococcus halophilus Nc 4, complete sequence	4079427	1958906	2018874	4079427	integrase,protease,tRNA,transposase	uncultured_virus(22.22%)	54	1980399:1980419	1994826:1994846
WP_013032878.1|1958906_1959338_+|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_013032879.1|1959400_1959757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032880.1|1959811_1960303_+	Retron-type reverse transcriptase-like protein	NA	NA	NA	NA	NA
WP_013031487.1|1960340_1961564_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.5	2.8e-47
WP_157862536.1|1961865_1962174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032882.1|1962634_1963519_-	ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_013032883.1|1963524_1965036_-	alternate F1F0 ATPase, F1 subunit alpha	NA	NA	NA	NA	NA
WP_013032884.1|1965060_1965822_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_013032885.1|1965825_1966104_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_013032886.1|1966103_1966835_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_013032887.1|1966831_1967989_-	Do family serine endopeptidase	NA	A0A1B1IRH0	uncultured_Mediterranean_phage	33.1	1.6e-15
WP_157862644.1|1973930_1975676_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	26.8	4.8e-32
WP_013032889.1|1975771_1977190_+	phospholipase	NA	NA	NA	NA	NA
WP_157862645.1|1977292_1978642_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_013032891.1|1978658_1980476_+	DUF885 domain-containing protein	NA	NA	NA	NA	NA
1980399:1980419	attL	GGTTCCATTCCCTTGGATATC	NA	NA	NA	NA
WP_013032892.1|1980552_1980804_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_013032893.1|1980800_1981265_+	type II toxin-antitoxin system HicB family antitoxin	NA	K7PJX6	Enterobacterial_phage	50.0	4.2e-28
WP_041354809.1|1981300_1981681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032895.1|1981704_1981944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083761388.1|1982294_1983119_-	esterase-like activity of phytase family protein	NA	NA	NA	NA	NA
WP_013032896.1|1983313_1983688_+	EF-hand domain-containing protein	NA	NA	NA	NA	NA
WP_013032897.1|1984104_1985481_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_041354817.1|1986836_1987826_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_086009279.1|1988042_1988225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041355601.1|1988669_1989704_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_013032902.1|1989707_1990436_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_013032903.1|1990507_1991317_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_013032904.1|1991390_1991891_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_013032905.1|1991913_1993059_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	31.5	5.6e-29
WP_013032906.1|1993081_1993405_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
WP_013032907.1|1993431_1993638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032908.1|1993721_1994390_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	51.6	7.4e-50
WP_041354819.1|1994991_1996455_+	YdiU family protein	NA	NA	NA	NA	NA
1994826:1994846	attR	GATATCCAAGGGAATGGAACC	NA	NA	NA	NA
WP_013032911.1|1997113_1997473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041354723.1|1997502_1998006_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_157862509.1|1998011_1998572_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_013032912.1|1998581_1999850_+	DUF839 domain-containing protein	NA	NA	NA	NA	NA
WP_013032913.1|1999965_2001651_-	hypothetical protein	NA	A0A0N9QAZ1	Chrysochromulina_ericina_virus	24.4	2.7e-08
WP_013032914.1|2001775_2002243_+	cell wall hydrolase	NA	A0A218MLD1	uncultured_virus	42.3	9.2e-23
WP_157862646.1|2002591_2004820_+	CRISPR-associated helicase Cas3'	NA	NA	NA	NA	NA
WP_013032916.1|2004875_2005553_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA	NA
WP_013032917.1|2005549_2007298_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA	NA
WP_013032918.1|2007312_2008197_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA	NA
WP_041355604.1|2008221_2008851_+	CRISPR-associated protein Cas4	NA	NA	NA	NA	NA
WP_013032920.1|2008835_2009870_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_013032921.1|2009884_2010175_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_013032922.1|2010702_2011932_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_013032923.1|2011921_2012242_-	F0F1-ATPase subunit	NA	NA	NA	NA	NA
WP_041355605.1|2012246_2012630_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_013032925.1|2012641_2014054_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_013032926.1|2014363_2014873_+|protease	hydrogenase maturation protease	protease	NA	NA	NA	NA
WP_013032927.1|2014876_2016307_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	39.7	7.1e-66
WP_013032928.1|2016334_2017612_-	MFS transporter	NA	NA	NA	NA	NA
WP_013032929.1|2017659_2018874_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
>prophage 6
NC_013960	Nitrosococcus halophilus Nc 4, complete sequence	4079427	2030412	2078426	4079427	protease,tRNA,transposase	Liberibacter_phage(20.0%)	42	NA	NA
WP_013032940.1|2030412_2030958_+|transposase	transposase	transposase	C1KFF9	Lactobacillus_virus	37.4	2.7e-18
WP_013032941.1|2030993_2031773_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_041354825.1|2031793_2032414_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_013032943.1|2032403_2033636_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_013032944.1|2033632_2034448_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_013032945.1|2034457_2035318_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_013032946.1|2035526_2036834_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_013032947.1|2036884_2037616_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_013032948.1|2037663_2038185_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013032949.1|2038402_2038804_+	ectoine synthase	NA	NA	NA	NA	NA
WP_041355609.1|2038889_2040332_+	aspartate kinase	NA	NA	NA	NA	NA
WP_013032951.1|2040328_2042695_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	26.6	2.0e-17
WP_041354827.1|2042772_2044029_+	exonuclease subunit SbcD	NA	NA	NA	NA	NA
WP_013032953.1|2044025_2047685_+	AAA family ATPase	NA	G3MAB6	Bacillus_virus	28.4	2.6e-11
WP_013032954.1|2047751_2048123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032955.1|2048321_2048591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032956.1|2048656_2048944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032958.1|2049564_2051727_+	SAM-dependent DNA methyltransferase	NA	A0A220A2U4	Liberibacter_phage	26.6	6.6e-31
WP_013032959.1|2051723_2053079_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_013032960.1|2053222_2054320_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	28.0	7.4e-23
WP_013032961.1|2054323_2058133_+	HsdR family type I site-specific deoxyribonuclease	NA	A0A220A398	Liberibacter_phage	28.9	1.5e-54
WP_013032962.1|2058406_2059612_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_013032963.1|2059875_2060166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032964.1|2060767_2061763_+	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	24.6	2.8e-05
WP_013032965.1|2061850_2062303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032966.1|2062525_2062756_+	addiction module protein	NA	NA	NA	NA	NA
WP_157862538.1|2062996_2063392_+|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	52.4	3.0e-35
WP_013032969.1|2063392_2064514_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A191SB13	Nostoc_phage	36.0	2.8e-41
WP_157862539.1|2064671_2065232_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_083761389.1|2065170_2065740_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013032971.1|2066262_2066700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032972.1|2067081_2067378_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_157862540.1|2067602_2068742_+|transposase	IS4 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	35.8	2.9e-62
WP_013032974.1|2068811_2069102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032975.1|2069224_2069521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013032976.1|2069540_2070686_-	DUF819 family protein	NA	NA	NA	NA	NA
WP_013032977.1|2070783_2072214_+	TldD/PmbA family protein	NA	NA	NA	NA	NA
WP_013032978.1|2072214_2073537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041355617.1|2073611_2074931_+	PhoPQ-activated pathogenicity-like protein PqaA type	NA	NA	NA	NA	NA
WP_013032980.1|2074959_2076147_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_013032981.1|2076685_2077261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013032982.1|2077268_2078426_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 7
NC_013960	Nitrosococcus halophilus Nc 4, complete sequence	4079427	2295203	2303323	4079427		Escherichia_phage(42.86%)	7	NA	NA
WP_013033169.1|2295203_2296676_+	glucose-6-phosphate dehydrogenase	NA	A0A1D8KIX9	Synechococcus_phage	39.1	6.4e-86
WP_013033170.1|2296688_2297765_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	50.8	7.9e-94
WP_013033171.1|2297757_2298636_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.1	1.6e-92
WP_013033172.1|2298642_2299188_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.7	2.4e-46
WP_013033173.1|2299184_2300075_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	33.0	7.4e-29
WP_013033174.1|2300085_2302098_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y1H0	Organic_Lake_phycodnavirus	28.3	4.8e-28
WP_013033175.1|2302240_2303323_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	33.2	1.4e-34
>prophage 8
NC_013960	Nitrosococcus halophilus Nc 4, complete sequence	4079427	2875028	2883578	4079427		Orpheovirus(33.33%)	9	NA	NA
WP_013033731.1|2875028_2876282_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	50.4	8.0e-98
WP_013033732.1|2876296_2876821_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_041355001.1|2876979_2878074_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.7	4.6e-49
WP_013033734.1|2878132_2878789_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	33.7	4.3e-18
WP_013033735.1|2878795_2879902_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2I2L4Y7	Orpheovirus	32.4	3.4e-39
WP_013033736.1|2879921_2880524_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	40.2	1.7e-24
WP_013033737.1|2880798_2881176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013033739.1|2881404_2882109_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_013033740.1|2882237_2883578_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	38.2	1.3e-56
>prophage 9
NC_013960	Nitrosococcus halophilus Nc 4, complete sequence	4079427	2947108	3020385	4079427	protease,tRNA,transposase	Escherichia_phage(20.0%)	60	NA	NA
WP_157862538.1|2947108_2947504_+|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	52.4	3.0e-35
WP_013033679.1|2947504_2948626_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A191SB13	Nostoc_phage	36.2	2.8e-41
WP_083761407.1|2948656_2948989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013033800.1|2948963_2949404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013033801.1|2949455_2949659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049780661.1|2950032_2950374_+	DUF59 domain-containing protein	NA	NA	NA	NA	NA
WP_013033803.1|2950416_2951565_+	NnrS family protein	NA	NA	NA	NA	NA
WP_013033804.1|2952198_2952945_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013033805.1|2952968_2953445_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	45.0	1.4e-26
WP_013033806.1|2953536_2953899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013033808.1|2954667_2956245_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_013033809.1|2956263_2957805_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_013033810.1|2957815_2959351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013033811.1|2959340_2962688_-	DUF2309 domain-containing protein	NA	NA	NA	NA	NA
WP_013033812.1|2962715_2964170_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_013033813.1|2964631_2965255_+	DUF938 domain-containing protein	NA	NA	NA	NA	NA
WP_013033814.1|2965274_2966609_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_013033815.1|2966779_2969455_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_013033816.1|2969469_2970795_+	biotin/lipoyl-binding protein	NA	NA	NA	NA	NA
WP_013033817.1|2970868_2972287_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.7	2.6e-44
WP_013033818.1|2972482_2973052_+	HNH endonuclease	NA	A0A248SKR4	Salicola_phage	47.1	1.4e-36
WP_013033819.1|2973147_2974110_+	universal stress protein	NA	NA	NA	NA	NA
WP_013033820.1|2975996_2976461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013033821.1|2976483_2979465_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_013033822.1|2979489_2980503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013033823.1|2980796_2981651_+	3',5'-cyclic-nucleotide phosphodiesterase	NA	NA	NA	NA	NA
WP_013033824.1|2981753_2983151_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_013033825.1|2983367_2984327_+	lipoprotein transmembrane	NA	NA	NA	NA	NA
WP_013033826.1|2984385_2985294_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	74.8	3.2e-112
WP_013033827.1|2985378_2987706_-	fatty acid cis/trans isomerase	NA	NA	NA	NA	NA
WP_013033828.1|2987737_2988853_-	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA	NA
WP_013033829.1|2988870_2989506_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_013033830.1|2989678_2990053_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_013033831.1|2990389_2990674_+	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_013033832.1|2990754_2991108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041355775.1|2991537_2992359_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_013033834.1|2992488_2993661_-	DUF1624 domain-containing protein	NA	NA	NA	NA	NA
WP_013033835.1|2993668_2994454_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_013033836.1|2994528_2995257_+	CRISPR-associated protein Cas6	NA	NA	NA	NA	NA
WP_013033837.1|2995253_2998109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013033838.1|2998111_2999110_+	CRISPR-associated protein Csc2	NA	NA	NA	NA	NA
WP_157862658.1|2999220_2999790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013033840.1|2999780_3001769_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_013033841.1|3001725_3002274_+	Dna2/Cas4 domain-containing protein	NA	NA	NA	NA	NA
WP_013033842.1|3002283_3003252_+	CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_013033843.1|3003258_3003561_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_041355783.1|3008038_3008431_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_083761408.1|3008709_3008997_+	DUF4258 domain-containing protein	NA	NA	NA	NA	NA
WP_013033847.1|3008999_3009260_+	YgiT-type zinc finger protein	NA	NA	NA	NA	NA
WP_013032233.1|3009464_3009878_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	49.3	3.8e-28
WP_013033848.1|3009934_3011110_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A077SLN2	Escherichia_phage	59.0	5.8e-106
WP_013033849.1|3011466_3013173_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.4	1.5e-22
WP_013033850.1|3013258_3013942_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_157862659.1|3014145_3014904_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_013033852.1|3014863_3015625_-	DUF3047 domain-containing protein	NA	NA	NA	NA	NA
WP_013033853.1|3015899_3018059_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013033854.1|3018055_3018241_-	haloacid dehalogenase	NA	NA	NA	NA	NA
WP_086009270.1|3018233_3018530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049780664.1|3018526_3019165_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_013031487.1|3019161_3020385_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	45.5	2.8e-47
