assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	1	17473-17567	1	CRISPRCasFinder	no		Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Orphan	CTCTAGGTGGATCAGGGATATGCAAAAT	28	0	0	NA	NA	NA	1	1	Orphan	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA|220aa|up_1|NC_013385.1_16220_16880_+,NA|52aa|up_0|NC_013385.1_17110_17266_+,NA|119aa|down_2|NC_013385.1_18937_19294_-,NA|158aa|down_3|NC_013385.1_19274_19748_-,NA|577aa|down_4|NC_013385.1_19719_21450_-	NA|803aa|up_9|NC_013385.1_6100_8509_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|294aa|up_8|NC_013385.1_8587_9469_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|191aa|up_7|NC_013385.1_9474_10047_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|384aa|up_6|NC_013385.1_10127_11279_+	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|528aa|up_5|NC_013385.1_11279_12863_+	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|428aa|up_4|NC_013385.1_12899_14183_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|384aa|up_3|NC_013385.1_14445_15597_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|74aa|up_2|NC_013385.1_15834_16056_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|220aa|up_1|NC_013385.1_16220_16880_+	NA	NA|52aa|up_0|NC_013385.1_17110_17266_+	NA	NA|145aa|down_0|NC_013385.1_18310_18745_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|61aa|down_1|NC_013385.1_18728_18911_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|119aa|down_2|NC_013385.1_18937_19294_-	NA	NA|158aa|down_3|NC_013385.1_19274_19748_-	NA	NA|577aa|down_4|NC_013385.1_19719_21450_-	NA	NA|201aa|down_5|NC_013385.1_21440_22043_-	pfam01807, zf-CHC2, CHC2 zinc finger	NA|61aa|down_6|NC_013385.1_22090_22273_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|211aa|down_7|NC_013385.1_23082_23715_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|46aa|down_8|NC_013385.1_23731_23869_+	TIGR03973, conserved_hypothetical_protein, six-cysteine peptide SCIFF	NA|453aa|down_9|NC_013385.1_23949_25308_+	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	2	694576-695935	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	Cas14u_CAS-V,cas1,cas2	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Unclear	GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	19,20,20	20	Unclear	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA,NA|120aa|down_5|NC_013385.1_702100_702460_+,NA|131aa|down_6|NC_013385.1_702456_702849_+,NA|84aa|down_8|NC_013385.1_703233_703485_+	NA|463aa|up_9|NC_013385.1_684668_686057_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|446aa|up_8|NC_013385.1_686064_687402_+	COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]	NA|148aa|up_7|NC_013385.1_687415_687859_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|359aa|up_6|NC_013385.1_687855_688932_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|186aa|up_5|NC_013385.1_688937_689495_+	PRK00529, PRK00529, elongation factor P; Validated	NA|379aa|up_4|NC_013385.1_689527_690664_-	pfam01950, FBPase_3, Fructose-1,6-bisphosphatase	NA|161aa|up_3|NC_013385.1_690810_691293_+	cd03385, PAP2_BcrC_like, PAP2_like proteins, BcrC_like subfamily	Cas14u_CAS-V|432aa|up_2|NC_013385.1_691336_692632_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas1|332aa|up_1|NC_013385.1_693040_694036_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|88aa|up_0|NC_013385.1_694062_694326_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|286aa|down_0|NC_013385.1_696162_697020_+	cd13634, PBP2_Sco4506, The conserved hypothetical protein SCO4506 exhibits the type 2 periplasmic-binidng protein fold	NA|356aa|down_1|NC_013385.1_697006_698074_+	TIGR03699, menaquin_MqnC, dehypoxanthine futalosine cyclase	NA|463aa|down_2|NC_013385.1_698089_699478_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|636aa|down_3|NC_013385.1_699474_701382_+	COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]	NA|120aa|down_4|NC_013385.1_701430_701790_+	pfam16093, PAC4, Proteasome assembly chaperone 4	NA|120aa|down_5|NC_013385.1_702100_702460_+	NA	NA|131aa|down_6|NC_013385.1_702456_702849_+	NA	NA|124aa|down_7|NC_013385.1_702845_703217_+	pfam06868, DUF1257, Protein of unknown function (DUF1257)	NA|84aa|down_8|NC_013385.1_703233_703485_+	NA	NA|68aa|down_9|NC_013385.1_703481_703685_+	pfam11211, DUF2997, Protein of unknown function (DUF2997)
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	3	818981-820731	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas14u_CAS-V	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Type III-A,Type III-D,Type III-C,Type III-B	GTTTGTAGCCTACCTATGAGGGCTTGAAAC,GTTTGTAGCCTACCTATGAGGGCTTGAAAC,GTTTGTAGCCTACCTATGAGGGCTTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	25,26,26	26	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA|86aa|up_8|NC_013385.1_807447_807705_-,NA|118aa|up_7|NC_013385.1_807738_808092_+,NA|529aa|up_6|NC_013385.1_808161_809748_+,cmr5gr11|160aa|up_1|NC_013385.1_817140_817620_+,cmr3gr5|351aa|up_0|NC_013385.1_817616_818669_+,NA|86aa|down_2|NC_013385.1_822724_822982_-,NA|69aa|down_3|NC_013385.1_823445_823652_+,NA|83aa|down_5|NC_013385.1_824852_825101_+,NA|133aa|down_6|NC_013385.1_825295_825694_+,NA|306aa|down_7|NC_013385.1_826479_827397_+,NA|98aa|down_8|NC_013385.1_827469_827763_+	NA|268aa|up_9|NC_013385.1_806617_807421_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|86aa|up_8|NC_013385.1_807447_807705_-	NA	NA|118aa|up_7|NC_013385.1_807738_808092_+	NA	NA|529aa|up_6|NC_013385.1_808161_809748_+	NA	csm3gr7|424aa|up_5|NC_013385.1_809708_810980_+	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1	cmr6gr7|314aa|up_4|NC_013385.1_811260_812202_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cas10|1283aa|up_3|NC_013385.1_812198_816047_+	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr4gr7|368aa|up_2|NC_013385.1_816043_817147_+	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr5gr11|160aa|up_1|NC_013385.1_817140_817620_+	NA	cmr3gr5|351aa|up_0|NC_013385.1_817616_818669_+	NA	NA|311aa|down_0|NC_013385.1_820763_821696_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|268aa|down_1|NC_013385.1_821894_822698_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|86aa|down_2|NC_013385.1_822724_822982_-	NA	NA|69aa|down_3|NC_013385.1_823445_823652_+	NA	NA|325aa|down_4|NC_013385.1_823670_824645_+	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|83aa|down_5|NC_013385.1_824852_825101_+	NA	NA|133aa|down_6|NC_013385.1_825295_825694_+	NA	NA|306aa|down_7|NC_013385.1_826479_827397_+	NA	NA|98aa|down_8|NC_013385.1_827469_827763_+	NA	NA|217aa|down_9|NC_013385.1_827833_828484_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	4	925686-927040	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Type III-A,Type III-D,Type III-C,Type III-B	GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	19,20,20	20	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA,cmr5gr11|127aa|down_4|NC_013385.1_935932_936313_+	NA|330aa|up_9|NC_013385.1_915522_916512_+	COG4030, COG4030, Uncharacterized protein conserved in archaea [Function unknown]	NA|310aa|up_8|NC_013385.1_916525_917455_+	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	NA|258aa|up_7|NC_013385.1_917479_918253_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|303aa|up_6|NC_013385.1_918347_919256_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|210aa|up_5|NC_013385.1_919242_919872_+	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|161aa|up_4|NC_013385.1_920254_920737_+	pfam02662, FlpD, Methyl-viologen-reducing hydrogenase, delta subunit	NA|429aa|up_3|NC_013385.1_920738_922025_+	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	NA|654aa|up_2|NC_013385.1_922068_924030_+	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	NA|102aa|up_1|NC_013385.1_924030_924336_+	pfam09339, HTH_IclR, IclR helix-turn-helix domain	NA|368aa|up_0|NC_013385.1_924332_925436_+	COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy production and conversion]	csm3gr7|345aa|down_0|NC_013385.1_929757_930792_+	pfam03787, RAMPs, RAMP superfamily	cmr6gr7|364aa|down_1|NC_013385.1_930788_931880_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas10|994aa|down_2|NC_013385.1_931876_934858_+	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr4gr7|355aa|down_3|NC_013385.1_934871_935936_+	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr5gr11|127aa|down_4|NC_013385.1_935932_936313_+	NA	cmr3gr5|292aa|down_5|NC_013385.1_936309_937185_+	pfam03787, RAMPs, RAMP superfamily	NA|392aa|down_6|NC_013385.1_937332_938508_-	pfam18854, baeRF_family10, Bacterial archaeo-eukaryotic release factor family 10	NA|385aa|down_7|NC_013385.1_938690_939845_+	cd00887, MoeA, MoeA family	NA|647aa|down_8|NC_013385.1_939851_941792_+	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|153aa|down_9|NC_013385.1_941813_942272_+	pfam01967, MoaC, MoaC family
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	5	927177-928404	4,5,4	PILER-CR,CRISPRCasFinder,CRT	no	cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Type III-A,Type III-D,Type III-C,Type III-B	GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	17,18,18	18	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA,cmr5gr11|127aa|down_4|NC_013385.1_935932_936313_+	NA|330aa|up_9|NC_013385.1_915522_916512_+	COG4030, COG4030, Uncharacterized protein conserved in archaea [Function unknown]	NA|310aa|up_8|NC_013385.1_916525_917455_+	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	NA|258aa|up_7|NC_013385.1_917479_918253_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|303aa|up_6|NC_013385.1_918347_919256_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|210aa|up_5|NC_013385.1_919242_919872_+	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|161aa|up_4|NC_013385.1_920254_920737_+	pfam02662, FlpD, Methyl-viologen-reducing hydrogenase, delta subunit	NA|429aa|up_3|NC_013385.1_920738_922025_+	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	NA|654aa|up_2|NC_013385.1_922068_924030_+	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	NA|102aa|up_1|NC_013385.1_924030_924336_+	pfam09339, HTH_IclR, IclR helix-turn-helix domain	NA|368aa|up_0|NC_013385.1_924332_925436_+	COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy production and conversion]	csm3gr7|345aa|down_0|NC_013385.1_929757_930792_+	pfam03787, RAMPs, RAMP superfamily	cmr6gr7|364aa|down_1|NC_013385.1_930788_931880_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas10|994aa|down_2|NC_013385.1_931876_934858_+	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr4gr7|355aa|down_3|NC_013385.1_934871_935936_+	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr5gr11|127aa|down_4|NC_013385.1_935932_936313_+	NA	cmr3gr5|292aa|down_5|NC_013385.1_936309_937185_+	pfam03787, RAMPs, RAMP superfamily	NA|392aa|down_6|NC_013385.1_937332_938508_-	pfam18854, baeRF_family10, Bacterial archaeo-eukaryotic release factor family 10	NA|385aa|down_7|NC_013385.1_938690_939845_+	cd00887, MoeA, MoeA family	NA|647aa|down_8|NC_013385.1_939851_941792_+	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|153aa|down_9|NC_013385.1_941813_942272_+	pfam01967, MoaC, MoaC family
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	6	928543-929635	5,6,5	PILER-CR,CRISPRCasFinder,CRT	no	csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Type III-D,Type III-C,Type III-B, Type III-C?,Type III-A	GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	16,16,16	16	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-C?,TypeIII-A	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA,cmr5gr11|127aa|down_4|NC_013385.1_935932_936313_+	NA|330aa|up_9|NC_013385.1_915522_916512_+	COG4030, COG4030, Uncharacterized protein conserved in archaea [Function unknown]	NA|310aa|up_8|NC_013385.1_916525_917455_+	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	NA|258aa|up_7|NC_013385.1_917479_918253_+	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|303aa|up_6|NC_013385.1_918347_919256_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|210aa|up_5|NC_013385.1_919242_919872_+	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|161aa|up_4|NC_013385.1_920254_920737_+	pfam02662, FlpD, Methyl-viologen-reducing hydrogenase, delta subunit	NA|429aa|up_3|NC_013385.1_920738_922025_+	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	NA|654aa|up_2|NC_013385.1_922068_924030_+	COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	NA|102aa|up_1|NC_013385.1_924030_924336_+	pfam09339, HTH_IclR, IclR helix-turn-helix domain	NA|368aa|up_0|NC_013385.1_924332_925436_+	COG1150, HdrC, Heterodisulfide reductase, subunit C [Energy production and conversion]	csm3gr7|345aa|down_0|NC_013385.1_929757_930792_+	pfam03787, RAMPs, RAMP superfamily	cmr6gr7|364aa|down_1|NC_013385.1_930788_931880_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas10|994aa|down_2|NC_013385.1_931876_934858_+	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr4gr7|355aa|down_3|NC_013385.1_934871_935936_+	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr5gr11|127aa|down_4|NC_013385.1_935932_936313_+	NA	cmr3gr5|292aa|down_5|NC_013385.1_936309_937185_+	pfam03787, RAMPs, RAMP superfamily	NA|392aa|down_6|NC_013385.1_937332_938508_-	pfam18854, baeRF_family10, Bacterial archaeo-eukaryotic release factor family 10	NA|385aa|down_7|NC_013385.1_938690_939845_+	cd00887, MoeA, MoeA family	NA|647aa|down_8|NC_013385.1_939851_941792_+	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|153aa|down_9|NC_013385.1_941813_942272_+	pfam01967, MoaC, MoaC family
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	7	991878-993835	6,7,6	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas6,cas8b1,cas7b,cas5,cas3,cas4,csx1,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,csx21	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Type III-D,Type III-C,Type III-B,Type I-B,Type III-A	GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC,GTTTGTAGCCTACCTATGAGGGATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	29,29,29	29	TypeIII-D,TypeIII-C,TypeIII-B,TypeI-B,TypeIII-A	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA,NA|296aa|down_0|NC_013385.1_994003_994891_+,csm2gr11|129aa|down_6|NC_013385.1_1001428_1001815_+,csx19|183aa|down_9|NC_013385.1_1003521_1004070_+	NA|440aa|up_9|NC_013385.1_978620_979940_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|391aa|up_8|NC_013385.1_979956_981129_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|592aa|up_7|NC_013385.1_981130_982906_+	cd10926, CE4_u2, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily	WYL|331aa|up_6|NC_013385.1_983097_984090_+	pfam13280, WYL, WYL domain	cas6|250aa|up_5|NC_013385.1_984149_984899_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b1|665aa|up_4|NC_013385.1_984912_986907_+	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas7b|335aa|up_3|NC_013385.1_986906_987911_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|267aa|up_2|NC_013385.1_987917_988718_+	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|822aa|up_1|NC_013385.1_988675_991141_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas4|182aa|up_0|NC_013385.1_991140_991686_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|296aa|down_0|NC_013385.1_994003_994891_+	NA	csx1|376aa|down_1|NC_013385.1_994966_996094_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	csx1|432aa|down_2|NC_013385.1_996095_997391_+	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas10|711aa|down_3|NC_013385.1_997404_999537_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|238aa|down_4|NC_013385.1_999551_1000265_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csx10gr5|409aa|down_5|NC_013385.1_1000236_1001463_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm2gr11|129aa|down_6|NC_013385.1_1001428_1001815_+	NA	csm3gr7|275aa|down_7|NC_013385.1_1001811_1002636_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm3gr7|299aa|down_8|NC_013385.1_1002628_1003525_+	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csx19|183aa|down_9|NC_013385.1_1003521_1004070_+	NA
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	8	1042896-1043922	7,8,7	PILER-CR,CRISPRCasFinder,CRT	no		Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Orphan	ATTTGTAGCCTACCTACGAGGGGTTGAAAC,ATTTGTAGCCTACCTACGAGGGGTTGAAAC,ATTTGTAGCCTACCTACGAGGGGTTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	15,15,15	15	Orphan	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA,NA	NA|145aa|up_9|NC_013385.1_1031503_1031938_+	pfam04472, SepF, Cell division protein SepF	NA|283aa|up_8|NC_013385.1_1031962_1032811_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|86aa|up_7|NC_013385.1_1032812_1033070_+	pfam02325, YGGT, YGGT family	NA|104aa|up_6|NC_013385.1_1033073_1033385_+	pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872	NA|917aa|up_5|NC_013385.1_1033412_1036163_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|198aa|up_4|NC_013385.1_1036105_1036699_-	cd16896, LT_Slt70-like, uncharacterized lytic transglycosylase subfamily with similarity to Slt70	NA|205aa|up_3|NC_013385.1_1036702_1037317_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|270aa|up_2|NC_013385.1_1037354_1038164_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|869aa|up_1|NC_013385.1_1038163_1040770_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|171aa|up_0|NC_013385.1_1041042_1041555_+	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins	NA|477aa|down_0|NC_013385.1_1044093_1045524_+	pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain	NA|474aa|down_1|NC_013385.1_1045525_1046947_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|238aa|down_2|NC_013385.1_1046927_1047641_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|404aa|down_3|NC_013385.1_1047772_1048984_+	pfam02810, SEC-C, SEC-C motif	NA|204aa|down_4|NC_013385.1_1048991_1049603_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|120aa|down_5|NC_013385.1_1049590_1049950_+	pfam08821, CGGC, CGGC domain	NA|391aa|down_6|NC_013385.1_1049976_1051149_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|396aa|down_7|NC_013385.1_1051123_1052311_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|214aa|down_8|NC_013385.1_1052282_1052924_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|58aa|down_9|NC_013385.1_1053035_1053209_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	9	1364207-1364302	9	CRISPRCasFinder	no		Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Orphan	GTTTCCGTCCCCTAATAGTCGGGTCAAAACG	31	0	0	NA	NA	NA	1	1	Orphan	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA|193aa|up_9|NC_013385.1_1357148_1357727_-,NA|115aa|up_7|NC_013385.1_1358566_1358911_-,NA|103aa|up_6|NC_013385.1_1359001_1359310_-,NA|137aa|up_0|NC_013385.1_1363420_1363831_+,NA|145aa|down_4|NC_013385.1_1367448_1367883_-,NA|93aa|down_5|NC_013385.1_1367849_1368128_-,NA|114aa|down_6|NC_013385.1_1368240_1368582_-,NA|86aa|down_7|NC_013385.1_1368602_1368860_-,NA|100aa|down_8|NC_013385.1_1368865_1369165_-	NA|193aa|up_9|NC_013385.1_1357148_1357727_-	NA	NA|185aa|up_8|NC_013385.1_1357960_1358515_-	pfam14088, DUF4268, Domain of unknown function (DUF4268)	NA|115aa|up_7|NC_013385.1_1358566_1358911_-	NA	NA|103aa|up_6|NC_013385.1_1359001_1359310_-	NA	NA|143aa|up_5|NC_013385.1_1360137_1360566_-	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|95aa|up_4|NC_013385.1_1360610_1360895_-	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	NA|134aa|up_3|NC_013385.1_1360899_1361301_-	pfam18480, DUF5615, Domain of unknown function (DUF5615)	NA|85aa|up_2|NC_013385.1_1361297_1361552_-	pfam04255, DUF433, Protein of unknown function (DUF433)	NA|470aa|up_1|NC_013385.1_1361855_1363265_-	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|137aa|up_0|NC_013385.1_1363420_1363831_+	NA	NA|65aa|down_0|NC_013385.1_1364386_1364581_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|120aa|down_1|NC_013385.1_1364688_1365048_+	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|84aa|down_2|NC_013385.1_1365074_1365326_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|664aa|down_3|NC_013385.1_1365450_1367442_-	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer	NA|145aa|down_4|NC_013385.1_1367448_1367883_-	NA	NA|93aa|down_5|NC_013385.1_1367849_1368128_-	NA	NA|114aa|down_6|NC_013385.1_1368240_1368582_-	NA	NA|86aa|down_7|NC_013385.1_1368602_1368860_-	NA	NA|100aa|down_8|NC_013385.1_1368865_1369165_-	NA	NA|334aa|down_9|NC_013385.1_1369267_1370269_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins
GCF_000024605.1_ASM2460v1	NC_013385	Ammonifex degensii KC4, complete sequence	10	1775088-1775565	8,10,8	PILER-CR,CRISPRCasFinder,CRT	no	cas4,cas2,cas1,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,cas3,WYL,cas6	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	Type I-D	CTTTCAGTCCCCTTGTCATCGGGGAAGGTACTGCAAC,CTTTCAGTCCCCTTGTCATCGGGGAAGGTACTGCAAC,CTTTCAGTCCCCTTGTCATCGGGGAAGGTACTGCAAC	37,37,37	0	0	NA	NA	NA:NA:NA	6,6,6	6	TypeI-D	Cas14u_CAS-V,cas3,Cas14b_CAS-V-F,RT,cas14k,cas1,cas2,csm3gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,Cas9_archaeal,WYL,cas6,cas8b1,cas7b,cas5,cas4,csx1,csx10gr5,csm2gr11,csx19,csx21,c2c9_V-U4,csc1gr5,csc2gr7,cas11d,cas10d,cas3HD,DEDDh,csa3	NA|266aa|up_9|NC_013385.1_1763443_1764241_-,csc1gr5|262aa|up_7|NC_013385.1_1764644_1765430_-,cas11d|190aa|up_5|NC_013385.1_1766499_1767069_-,cas10d|688aa|up_4|NC_013385.1_1767110_1769174_-,NA|119aa|down_6|NC_013385.1_1782112_1782469_-	NA|266aa|up_9|NC_013385.1_1763443_1764241_-	NA	NA|120aa|up_8|NC_013385.1_1764268_1764628_-	pfam14110, DUF4282, Domain of unknown function (DUF4282)	csc1gr5|262aa|up_7|NC_013385.1_1764644_1765430_-	NA	csc2gr7|316aa|up_6|NC_013385.1_1765436_1766384_-	TIGR03157, cas_Csc2, CRISPR type I-D/CYANO-associated protein Csc2	cas11d|190aa|up_5|NC_013385.1_1766499_1767069_-	NA	cas10d|688aa|up_4|NC_013385.1_1767110_1769174_-	NA	cas3HD|255aa|up_3|NC_013385.1_1769242_1770007_-	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''	cas3|971aa|up_2|NC_013385.1_1769993_1772906_-	pfam00270, DEAD, DEAD/DEAH box helicase	WYL|353aa|up_1|NC_013385.1_1772944_1774003_-	pfam13280, WYL, WYL domain	cas6|333aa|up_0|NC_013385.1_1773983_1774982_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|206aa|down_0|NC_013385.1_1775955_1776573_-	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|579aa|down_1|NC_013385.1_1776694_1778431_-	TIGR02512, Periplasmic_hydrogenase_large_subunit, [FeFe] hydrogenase, group A	NA|83aa|down_2|NC_013385.1_1778456_1778705_-	pfam10589, NADH_4Fe-4S, NADH-ubiquinone oxidoreductase-F iron-sulfur binding region	NA|584aa|down_3|NC_013385.1_1778718_1780470_-	TIGR02512, Periplasmic_hydrogenase_large_subunit, [FeFe] hydrogenase, group A	NA|274aa|down_4|NC_013385.1_1780480_1781302_-	pfam02662, FlpD, Methyl-viologen-reducing hydrogenase, delta subunit	NA|169aa|down_5|NC_013385.1_1781351_1781858_-	pfam12953, DUF3842, Domain of unknown function (DUF3842)	NA|119aa|down_6|NC_013385.1_1782112_1782469_-	NA	NA|482aa|down_7|NC_013385.1_1782595_1784041_-	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit	NA|354aa|down_8|NC_013385.1_1784132_1785194_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|204aa|down_9|NC_013385.1_1785174_1785786_-	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]
