assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	1	389335-389436	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NC_013450.1_380894_381104_-,NA|128aa|up_6|NC_013450.1_381928_382312_-,NA|33aa|up_0|NC_013450.1_388559_388658_+,NA|221aa|down_1|NC_013450.1_390526_391189_-,NA|179aa|down_7|NC_013450.1_397280_397817_-	NA|84aa|up_9|NC_013450.1_380604_380856_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NC_013450.1_380894_381104_-	NA	NA|194aa|up_7|NC_013450.1_381281_381863_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NC_013450.1_381928_382312_-	NA	NA|209aa|up_5|NC_013450.1_382581_383208_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NC_013450.1_383651_385175_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_013450.1_385190_385760_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_013450.1_386251_387007_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_013450.1_387086_388475_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NC_013450.1_388559_388658_+	NA	NA|319aa|down_0|NC_013450.1_389452_390409_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_013450.1_390526_391189_-	NA	NA|136aa|down_2|NC_013450.1_391331_391739_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_013450.1_392251_392830_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_013450.1_392829_394098_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_013450.1_394135_395602_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_013450.1_395626_397168_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_013450.1_397280_397817_-	NA	NA|235aa|down_8|NC_013450.1_398208_398913_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_013450.1_399311_399584_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	2	736596-736678	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_013450.1_723209_723416_+,NA|34aa|down_1|NC_013450.1_738333_738435_+,NA|52aa|down_8|NC_013450.1_746283_746439_+	NA|69aa|up_9|NC_013450.1_723209_723416_+	NA	NA|237aa|up_8|NC_013450.1_723503_724214_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_013450.1_724197_725202_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_013450.1_725675_727616_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_013450.1_727885_729769_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_013450.1_729780_731562_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_013450.1_731783_732761_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_013450.1_732753_734268_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_013450.1_734507_735566_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_013450.1_735904_736447_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_013450.1_737325_738243_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_013450.1_738333_738435_+	NA	NA|502aa|down_2|NC_013450.1_738512_740018_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_013450.1_740360_740861_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_013450.1_740880_741747_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_013450.1_742547_742946_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_013450.1_742908_745014_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_013450.1_745131_746103_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_013450.1_746283_746439_+	NA	NA|324aa|down_9|NC_013450.1_746477_747449_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	3	777545-777623	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	777569-777599|777569-777599|777569-777599	NC_013450.1_274257-274227|NC_013450.1_274202-274172|NC_013450.1_1667304-1667334	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_013450.1_768421_768526_+,NA|36aa|up_5|NC_013450.1_769958_770066_+,NA	NA|191aa|up_9|NC_013450.1_764862_765435_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_013450.1_765848_768380_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_013450.1_768421_768526_+	NA	NA|370aa|up_6|NC_013450.1_768694_769805_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_013450.1_769958_770066_+	NA	NA|280aa|up_4|NC_013450.1_770213_771053_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_013450.1_771226_771877_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_013450.1_771873_772110_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_013450.1_772378_774364_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_013450.1_774371_777218_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_013450.1_777881_778814_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_013450.1_778819_779659_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_013450.1_779666_780152_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_013450.1_780159_781599_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_013450.1_781665_782601_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_013450.1_783369_784281_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_013450.1_784277_785273_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_013450.1_785383_786328_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_013450.1_786891_787479_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_013450.1_787721_788624_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4	783003-783093	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	15	783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060|783036-783060	NC_013450.1_150978-150954|NC_013450.1_151036-151012|NC_013450.1_274173-274149|NC_013450.1_274283-274259|NC_013450.1_612803-612779|NC_013450.1_735637-735661|NC_013450.1_826473-826497|NC_013450.1_1361514-1361490|NC_013450.1_1632908-1632932|NC_013450.1_1647463-1647439|NC_013450.1_1988138-1988162|NC_013450.1_274228-274204|NC_013450.1_953766-953790|NC_013450.1_1667159-1667183|NC_013450.1_1667392-1667416	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NC_013450.1_770213_771053_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NC_013450.1_771226_771877_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NC_013450.1_771873_772110_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NC_013450.1_772378_774364_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NC_013450.1_774371_777218_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NC_013450.1_777881_778814_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NC_013450.1_778819_779659_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NC_013450.1_779666_780152_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NC_013450.1_780159_781599_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NC_013450.1_781665_782601_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NC_013450.1_783369_784281_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NC_013450.1_784277_785273_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NC_013450.1_785383_786328_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NC_013450.1_786891_787479_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NC_013450.1_787721_788624_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NC_013450.1_789326_789956_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NC_013450.1_790768_791782_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NC_013450.1_791834_792845_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NC_013450.1_792983_794174_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NC_013450.1_794295_795057_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	5	826400-826481	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	826424-826457	NC_013450.1_1361622-1361589	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NC_013450.1_819502_820084_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_013450.1_820156_820774_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_013450.1_820928_821423_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_013450.1_821821_822244_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_013450.1_822391_823108_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_013450.1_823190_823730_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_013450.1_823880_824201_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_013450.1_824344_824701_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_013450.1_824858_825239_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_013450.1_825417_826296_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_013450.1_827089_827476_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_013450.1_827468_827765_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_013450.1_828014_829040_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_013450.1_829032_829728_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_013450.1_829745_830567_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NC_013450.1_830710_831931_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NC_013450.1_831944_833333_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NC_013450.1_833359_833932_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NC_013450.1_834103_834325_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NC_013450.1_834325_834598_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	6	1149944-1150101	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGAAAAGTCAGC	45	2	2	1149990-1150000|1150047-1150057	NC_013452.1_1194-1204|NC_013452.1_1194-1204	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|56aa|up_5|NC_013450.1_1145573_1145741_+,NA|169aa|up_2|NC_013450.1_1147703_1148210_+,NA|62aa|down_0|NC_013450.1_1150288_1150474_-,NA|78aa|down_1|NC_013450.1_1151095_1151329_-,NA|49aa|down_4|NC_013450.1_1154957_1155104_+,NA|75aa|down_5|NC_013450.1_1155060_1155285_+	NA|272aa|up_9|NC_013450.1_1142499_1143315_+	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|267aa|up_8|NC_013450.1_1143550_1144351_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_7|NC_013450.1_1144362_1144950_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_6|NC_013450.1_1144942_1145446_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_5|NC_013450.1_1145573_1145741_+	NA	NA|110aa|up_4|NC_013450.1_1145934_1146264_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_3|NC_013450.1_1146632_1147034_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NC_013450.1_1147703_1148210_+	NA	NA|166aa|up_1|NC_013450.1_1148469_1148967_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NC_013450.1_1149116_1149467_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NC_013450.1_1150288_1150474_-	NA	NA|78aa|down_1|NC_013450.1_1151095_1151329_-	NA	NA|440aa|down_2|NC_013450.1_1151847_1153167_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|320aa|down_3|NC_013450.1_1153325_1154285_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_4|NC_013450.1_1154957_1155104_+	NA	NA|75aa|down_5|NC_013450.1_1155060_1155285_+	NA	NA|239aa|down_6|NC_013450.1_1155774_1156491_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|NC_013450.1_1156598_1157324_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|NC_013450.1_1157418_1158144_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|NC_013450.1_1158581_1159583_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	7	1632832-1632916	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1632858-1632890|1632858-1632890	NC_013450.1_151086-151054|NC_013450.1_1361622-1361590	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_013450.1_1622041_1622725_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_013450.1_1622968_1623145_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_013450.1_1623437_1624784_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_013450.1_1624790_1625543_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_013450.1_1625544_1626483_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_013450.1_1626486_1627626_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_013450.1_1627761_1629594_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_013450.1_1629662_1630289_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_013450.1_1630320_1631298_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_013450.1_1631398_1632523_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_013450.1_1633088_1634912_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_013450.1_1635257_1635509_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_013450.1_1635553_1636528_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_013450.1_1636584_1638786_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_013450.1_1638790_1639252_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_013450.1_1639343_1640030_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_013450.1_1640069_1640786_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_013450.1_1640788_1641142_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_013450.1_1641142_1641727_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_013450.1_1641716_1642286_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	8	2222253-2222333	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NC_013450.1_2217127_2217358_-,NA|364aa|up_0|NC_013450.1_2221144_2222236_+,NA|35aa|down_0|NC_013450.1_2222668_2222773_-,NA|53aa|down_1|NC_013450.1_2223452_2223611_+	NA|237aa|up_9|NC_013450.1_2212738_2213449_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_013450.1_2213569_2214013_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_013450.1_2214212_2214626_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_013450.1_2215082_2216456_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_013450.1_2217127_2217358_-	NA	NA|313aa|up_4|NC_013450.1_2217388_2218327_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_013450.1_2218762_2219428_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_013450.1_2219579_2219900_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NC_013450.1_2219901_2220879_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_013450.1_2221144_2222236_+	NA	NA|35aa|down_0|NC_013450.1_2222668_2222773_-	NA	NA|53aa|down_1|NC_013450.1_2223452_2223611_+	NA	NA|286aa|down_2|NC_013450.1_2224268_2225126_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_013450.1_2225193_2225976_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_013450.1_2226207_2228013_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_013450.1_2228693_2230232_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_013450.1_2230266_2232399_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_013450.1_2232410_2232845_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_013450.1_2232844_2233951_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_013450.1_2234269_2241715_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	9	2234574-2234659	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NC_013450.1_2221144_2222236_+,NA|35aa|up_8|NC_013450.1_2222668_2222773_-,NA|53aa|up_7|NC_013450.1_2223452_2223611_+,NA	NA|364aa|up_9|NC_013450.1_2221144_2222236_+	NA	NA|35aa|up_8|NC_013450.1_2222668_2222773_-	NA	NA|53aa|up_7|NC_013450.1_2223452_2223611_+	NA	NA|286aa|up_6|NC_013450.1_2224268_2225126_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_013450.1_2225193_2225976_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_013450.1_2226207_2228013_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_013450.1_2228693_2230232_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_013450.1_2230266_2232399_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_013450.1_2232410_2232845_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_013450.1_2232844_2233951_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_013450.1_2241992_2243348_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_013450.1_2243374_2244307_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_013450.1_2244308_2245118_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_013450.1_2245306_2246215_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_013450.1_2252455_2253520_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NC_013450.1_2253667_2255110_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NC_013450.1_2255432_2255906_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NC_013450.1_2256004_2257348_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NC_013450.1_2257524_2258208_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NC_013450.1_2258226_2259414_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000024585.1_ASM2458v1	NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10	2342559-2342639	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614|2342584-2342614	NC_013450.1_790171-790201|NC_013450.1_790227-790257|NC_013450.1_36973-37003|NC_013450.1_350627-350597|NC_013450.1_612867-612837|NC_013450.1_790283-790313|NC_013450.1_826736-826766|NC_013450.1_1051284-1051314|NC_013450.1_1155479-1155449|NC_013450.1_1361578-1361548|NC_013450.1_1451502-1451532|NC_013450.1_1647526-1647496|NC_013450.1_1986790-1986820|NC_013450.1_2331784-2331814|NC_013450.1_2507746-2507776	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_8|NC_013450.1_2333092_2333257_+,NA|106aa|up_7|NC_013450.1_2333501_2333819_+,NA|84aa|up_5|NC_013450.1_2338940_2339192_+,NA|62aa|up_0|NC_013450.1_2342331_2342517_+,NA	NA|303aa|up_9|NC_013450.1_2332051_2332960_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|NC_013450.1_2333092_2333257_+	NA	NA|106aa|up_7|NC_013450.1_2333501_2333819_+	NA	NA|422aa|up_6|NC_013450.1_2337286_2338552_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_013450.1_2338940_2339192_+	NA	NA|255aa|up_4|NC_013450.1_2339183_2339948_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_013450.1_2340109_2340550_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_013450.1_2340542_2341754_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_013450.1_2341855_2342206_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_013450.1_2342331_2342517_+	NA	NA|341aa|down_0|NC_013450.1_2342782_2343805_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_013450.1_2343824_2344424_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_013450.1_2344430_2344664_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_013450.1_2344669_2345116_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_013450.1_2345129_2345615_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_013450.1_2345611_2346871_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_013450.1_2346933_2347428_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_013450.1_2347429_2347936_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_013450.1_2347966_2348971_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_013450.1_2349140_2349746_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
