The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	933462	984508	6060298	transposase,protease,tRNA	Pandoravirus(18.18%)	46	NA	NA
WP_138180583.1|933462_934494_+|protease	zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_015746173.1|934507_935512_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_041369792.1|935759_936278_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	28.7	9.3e-08
WP_015746175.1|936501_938784_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	40.9	1.8e-108
WP_015746176.1|938780_939443_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	52.2	4.2e-45
WP_083785995.1|939492_940401_+	dihydropteroate synthase	NA	S4VNV0	Pandoravirus	34.9	7.5e-21
WP_015746178.1|940403_940799_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_015746179.1|940795_941287_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_041369795.1|941326_941785_+	DUF3180 domain-containing protein	NA	NA	NA	NA	NA
WP_052307812.1|942827_944297_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	34.9	8.9e-72
WP_015746183.1|944512_944872_+	Lsr2 family protein	NA	A0A0K1YA95	Streptomyces_phage	41.1	1.3e-13
WP_015746184.1|945235_947776_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	38.7	6.4e-126
WP_041368389.1|947984_949382_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	27.1	6.1e-30
WP_169312466.1|949683_950673_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.7	1.8e-39
WP_083785685.1|950779_951769_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_138180585.1|951677_952205_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_138179945.1|952348_953131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015746189.1|953163_954252_-	DNA integrity scanning protein DisA	NA	NA	NA	NA	NA
WP_015746190.1|954360_955788_-	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_015746191.1|955879_956482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746192.1|956912_957395_+	CarD family transcriptional regulator	NA	NA	NA	NA	NA
WP_015746193.1|957450_958596_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_052307814.1|958621_959806_-	MFS transporter	NA	NA	NA	NA	NA
WP_138179947.1|959828_960743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746196.1|961155_962115_-	NADPH:quinone oxidoreductase family protein	NA	NA	NA	NA	NA
WP_015746197.1|962121_963351_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_015746198.1|963347_964265_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_015746199.1|964270_965074_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_015746200.1|965079_966339_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_015746201.1|966495_967710_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_015746202.1|967753_969385_-	cyclohexanecarboxylate-CoA ligase	NA	A0A1V0SBX8	Catovirus	45.8	1.5e-11
WP_015746203.1|969402_970158_-	glucose 1-dehydrogenase	NA	NA	NA	NA	NA
WP_015746204.1|970390_971545_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_015746205.1|971586_972426_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_015746206.1|972609_973248_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015746207.1|973255_973753_-	ribose-5-phosphate isomerase	NA	NA	NA	NA	NA
WP_015746208.1|973924_974758_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_015746209.1|974754_974901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746210.1|974897_975371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138179949.1|975358_976033_+	nitroreductase family deazaflavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015746212.1|976035_978291_+	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_015746213.1|978304_978544_-	PTS transporter subunit EIIB	NA	NA	NA	NA	NA
WP_015746214.1|978540_979410_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_015746215.1|979515_980958_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	27.0	3.8e-35
WP_015746216.1|981043_982927_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_015746217.1|983251_984508_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	1114293	1171834	6060298	protease,plate,tail	Mycobacterium_phage(40.0%)	40	NA	NA
WP_086008620.1|1114293_1114668_+|protease	nickel-type superoxide dismutase maturation protease	protease	NA	NA	NA	NA
WP_015746341.1|1114968_1115577_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_015746342.1|1115689_1116082_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_015746343.1|1116264_1118205_+	ATP-binding protein	NA	A0A2D2W2C3	Stenotrophomonas_phage	31.8	3.7e-09
WP_015746344.1|1118477_1119080_+	DUF4255 domain-containing protein	NA	NA	NA	NA	NA
WP_015746345.1|1119083_1121498_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_015746346.1|1121500_1124443_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_015746347.1|1124439_1131438_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_015746348.1|1131532_1132438_+	alpha/beta hydrolase	NA	A0A286MQ79	Mycobacterium_phage	33.1	8.6e-09
WP_015746349.1|1132451_1134200_-	DUF4157 domain-containing protein	NA	NA	NA	NA	NA
WP_015746350.1|1134307_1135225_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015746351.1|1135315_1136359_+	L-threonine 3-dehydrogenase	NA	NA	NA	NA	NA
WP_015746352.1|1136362_1137541_+	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	28.2	2.9e-33
WP_015746353.1|1137589_1138270_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_015746354.1|1138974_1139613_-	LUD domain-containing protein	NA	NA	NA	NA	NA
WP_015746355.1|1139605_1141087_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_015746356.1|1141175_1141925_-	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_015746357.1|1142034_1143726_-	L-lactate permease	NA	NA	NA	NA	NA
WP_015746358.1|1143966_1144962_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015746359.1|1145459_1146959_+	citrate:proton symporter	NA	NA	NA	NA	NA
WP_015746360.1|1147067_1148333_+	CoA transferase	NA	NA	NA	NA	NA
WP_015746361.1|1148329_1149145_+	aldolase	NA	NA	NA	NA	NA
WP_015746362.1|1149296_1149983_-	response regulator	NA	NA	NA	NA	NA
WP_015746363.1|1149979_1151671_-	Spo0B domain-containing protein	NA	NA	NA	NA	NA
WP_083785998.1|1151927_1152848_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_015746365.1|1153110_1154571_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_015746366.1|1154589_1155021_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_015746367.1|1155297_1156209_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015746368.1|1156222_1157047_-	alpha/beta hydrolase	NA	A0A2D1GKK1	Mycobacterium_phage	32.7	5.6e-23
WP_138179960.1|1157924_1158626_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_015746371.1|1158712_1160674_-|plate	putative baseplate assembly protein	plate	NA	NA	NA	NA
WP_015746372.1|1160675_1161098_-	GPW/gp25 family protein	NA	NA	NA	NA	NA
WP_015746373.1|1161124_1162909_-	Rhs element Vgr protein	NA	NA	NA	NA	NA
WP_015746374.1|1162905_1163565_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_015746375.1|1163566_1165702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138179962.1|1168043_1168448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015746377.1|1168617_1169100_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_015746378.1|1169086_1169260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746380.1|1169750_1170233_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_015746381.1|1170268_1171834_-|tail	phage tail sheath family protein	tail	J9PVC2	Bacillus_phage	34.8	3.7e-68
>prophage 4
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	1758254	1801656	6060298	transposase,protease	Ralstonia_phage(33.33%)	35	NA	NA
WP_041368573.1|1758254_1759637_-|protease	zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_015746898.1|1759715_1760777_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_015746899.1|1760785_1761301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746900.1|1761538_1764487_+	UPF0182 family protein	NA	NA	NA	NA	NA
WP_015746902.1|1766258_1768082_-|transposase	IS481 family transposase	transposase	A0A0M4U788	Ralstonia_phage	30.0	1.8e-05
WP_015746903.1|1771992_1772556_-	dihydrofolate reductase family protein	NA	NA	NA	NA	NA
WP_015746904.1|1772741_1775801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746905.1|1776029_1776869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015746906.1|1776895_1777225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041368580.1|1777445_1778708_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_012814020.1|1778838_1780392_+|transposase	IS1182-like element ISNml3 family transposase	transposase	NA	NA	NA	NA
WP_012814030.1|1780748_1782146_-|transposase	IS1380-like element ISNml2 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	54.4	5.8e-121
WP_015746908.1|1782358_1783015_+	DUF4389 domain-containing protein	NA	NA	NA	NA	NA
WP_015746909.1|1783026_1783497_-	SRPBCC domain-containing protein	NA	NA	NA	NA	NA
WP_015746910.1|1783506_1784157_-	dihydrofolate reductase family protein	NA	NA	NA	NA	NA
WP_015746911.1|1784158_1784497_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015746912.1|1784615_1785230_+	dihydrofolate reductase family protein	NA	NA	NA	NA	NA
WP_083785765.1|1785344_1786013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746913.1|1786075_1786795_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_015746914.1|1786829_1787042_-	ferredoxin	NA	NA	NA	NA	NA
WP_015746915.1|1787038_1788319_-	respiratory-chain NADH dehydrogenase domain 51 kDa subunit	NA	NA	NA	NA	NA
WP_015746916.1|1788315_1788912_-	ferric reductase-like transmembrane domain-containing protein	NA	NA	NA	NA	NA
WP_015746917.1|1788911_1789871_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_015746918.1|1789870_1790260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746919.1|1790364_1790748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746920.1|1790858_1791536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746921.1|1791730_1792120_+	SHOCT domain-containing protein	NA	NA	NA	NA	NA
WP_138180011.1|1792168_1793014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746923.1|1793117_1793885_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA	NA
WP_015746924.1|1793942_1795469_-	catalase	NA	A0A2K9L572	Tupanvirus	40.4	3.3e-85
WP_015746925.1|1795770_1797264_+	APC family permease	NA	NA	NA	NA	NA
WP_015746926.1|1797260_1798874_+	amidohydrolase	NA	NA	NA	NA	NA
WP_015746927.1|1798879_1799503_+	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_015746928.1|1799524_1800319_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_015746517.1|1800405_1801656_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	2036931	2093693	6060298	transposase,protease,tail	Bacillus_phage(18.18%)	49	NA	NA
WP_041370185.1|2036931_2037534_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	48.6	1.0e-37
WP_041370187.1|2037601_2038243_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A248SJ97	Salicola_phage	36.6	5.0e-27
WP_015747144.1|2038496_2039765_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	60.2	1.7e-140
WP_015747145.1|2039867_2040476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747146.1|2040615_2041443_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_015747147.1|2041475_2041958_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_015747148.1|2042236_2042983_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_083785774.1|2042922_2043801_+	isoprenyl transferase	NA	NA	NA	NA	NA
WP_015747150.1|2043797_2044826_+	permease	NA	NA	NA	NA	NA
WP_015747151.1|2044858_2045839_+	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_015747152.1|2045848_2046241_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A1B3AYM0	Gordonia_phage	48.4	3.2e-21
WP_015747153.1|2046237_2046441_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_015747154.1|2046482_2047364_-	TIGR01777 family protein	NA	NA	NA	NA	NA
WP_015747155.1|2047466_2049209_-	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	NA	NA	NA	NA	NA
WP_015747156.1|2049337_2050714_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.7	6.5e-32
WP_052308164.1|2051091_2051376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747158.1|2051434_2052952_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	32.6	2.3e-30
WP_015747159.1|2053145_2054252_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_041368654.1|2054341_2055463_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
WP_015747161.1|2055587_2055779_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_041368656.1|2055942_2056587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052307831.1|2056543_2057638_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_015747163.1|2057889_2058201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052307874.1|2058283_2060614_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_015747165.1|2060632_2061415_-	maleylpyruvate isomerase family mycothiol-dependent enzyme	NA	NA	NA	NA	NA
WP_083785775.1|2061404_2062325_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_015747167.1|2062323_2065740_+	pyruvate carboxylase	NA	NA	NA	NA	NA
WP_015747168.1|2065752_2066322_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_015747169.1|2066318_2066816_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	38.0	1.5e-18
WP_015747170.1|2066960_2067713_+	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_041368658.1|2067836_2068433_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_015747172.1|2068479_2068659_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_015747173.1|2068678_2069428_+	ribonuclease III	NA	A0A2K9R4Y7	Dishui_lake_phycodnavirus	37.9	1.6e-24
WP_015747174.1|2069436_2070294_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	F8WPX6	Bacillus_phage	30.0	7.6e-23
WP_138180652.1|2070372_2071740_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_015747176.1|2071826_2073083_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_015747177.1|2073224_2073779_+	DUF4157 domain-containing protein	NA	NA	NA	NA	NA
WP_083785776.1|2073813_2074161_+	acylphosphatase	NA	NA	NA	NA	NA
WP_015747179.1|2074302_2077947_+	chromosome segregation protein SMC	NA	NA	NA	NA	NA
WP_015747180.1|2078130_2078841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747181.1|2079057_2079750_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_015747182.1|2079868_2080756_+	DUF4255 domain-containing protein	NA	NA	NA	NA	NA
WP_015747183.1|2080774_2082871_+	ATP-binding protein	NA	A0A0R6PCP6	Moraxella_phage	32.7	4.6e-21
WP_015747184.1|2082950_2083319_+	group 1 truncated hemoglobin	NA	NA	NA	NA	NA
WP_015747185.1|2083478_2086265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747186.1|2086412_2087189_+	DUF4157 domain-containing protein	NA	NA	NA	NA	NA
WP_015747187.1|2087209_2090995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052307875.1|2091500_2092016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747189.1|2092136_2093693_+|tail	phage tail sheath family protein	tail	A0A127AW39	Bacillus_phage	24.6	2.1e-26
>prophage 6
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	2159791	2215774	6060298	transposase,integrase,protease	Micromonas_pusilla_virus(16.67%)	43	2169690:2169707	2201985:2202002
WP_015747250.1|2159791_2161027_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_041368679.1|2161459_2162155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138180061.1|2162279_2163773_+	DNA (cytosine-5-)-methyltransferase	NA	M4QPY5	Micromonas_pusilla_virus	37.8	1.4e-35
WP_138180063.1|2166206_2166833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747253.1|2166842_2172185_+	DEAD/DEAH box helicase	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	22.0	7.6e-28
2169690:2169707	attL	GTCGCGATGACCACCTCG	NA	NA	NA	NA
WP_015745798.1|2172611_2173931_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_015747254.1|2174196_2174961_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA	NA
WP_015747255.1|2174953_2175103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747256.1|2175643_2175877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747257.1|2175930_2177721_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_169312568.1|2177725_2178244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169312451.1|2179257_2179707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052307882.1|2180413_2181742_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	25.0	5.9e-06
WP_015747259.1|2182124_2183147_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_015747260.1|2183248_2183425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747261.1|2183514_2184189_+	phospholipase/carboxylesterase	NA	NA	NA	NA	NA
WP_015747262.1|2184202_2184706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747263.1|2185009_2186119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747264.1|2186249_2187179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012814020.1|2187283_2188837_+|transposase	IS1182-like element ISNml3 family transposase	transposase	NA	NA	NA	NA
WP_015747266.1|2190519_2192310_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_015747267.1|2192575_2193259_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_015747268.1|2193266_2194280_-	PHB depolymerase family esterase	NA	NA	NA	NA	NA
WP_015747270.1|2195112_2195685_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_015747272.1|2196487_2197294_+	GAF and ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_138180065.1|2197596_2198073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747274.1|2198374_2199595_-	PHB depolymerase family esterase	NA	NA	NA	NA	NA
WP_015747275.1|2199688_2200084_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_083786016.1|2200612_2201023_+	response regulator	NA	NA	NA	NA	NA
WP_138180664.1|2201017_2201611_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015747278.1|2201742_2202792_+	aldo/keto reductase	NA	NA	NA	NA	NA
2201985:2202002	attR	CGAGGTGGTCATCGCGAC	NA	NA	NA	NA
WP_083785780.1|2202813_2203812_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015747280.1|2203920_2204760_+	SDR family NAD(P)-dependent oxidoreductase	NA	A0A2P0VP75	Tetraselmis_virus	28.3	6.1e-09
WP_015747281.1|2204811_2205414_-	hypothetical protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	28.6	2.7e-06
WP_138180067.1|2205547_2206237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747283.1|2206379_2207654_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_015747284.1|2207676_2208585_-	universal stress protein	NA	NA	NA	NA	NA
WP_015747285.1|2208938_2210195_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.3	5.2e-20
WP_015747286.1|2210181_2210973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747287.1|2211078_2211738_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_015747288.1|2211787_2212519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747289.1|2212657_2214445_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_052307725.1|2214679_2215774_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	2252650	2279020	6060298	transposase	uncultured_virus(22.22%)	22	NA	NA
WP_041368276.1|2252650_2254048_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	28.4	6.1e-30
WP_138180668.1|2255131_2256484_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	42.4	2.4e-31
WP_169312481.1|2256476_2256950_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	53.8	8.7e-29
WP_169312482.1|2257027_2257252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746597.1|2258366_2259182_-	ExeA family protein	NA	NA	NA	NA	NA
WP_138180670.1|2259860_2261213_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	42.4	2.4e-31
WP_015746595.1|2262284_2262878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041368704.1|2264077_2264287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747327.1|2264604_2265894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015747328.1|2265993_2266197_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	55.2	4.0e-15
WP_083785788.1|2266397_2269265_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_041368706.1|2269420_2269855_+	DUF3052 domain-containing protein	NA	NA	NA	NA	NA
WP_015747331.1|2269854_2270337_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_138180672.1|2270471_2271476_-	recombinase zinc beta ribbon domain-containing protein	NA	A0A0S2SXR4	Bacillus_phage	24.9	4.3e-09
WP_015747333.1|2272216_2272900_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_083785789.1|2272931_2273309_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_052307725.1|2273658_2274753_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_015747335.1|2274987_2276385_-|transposase	IS1380-like element ISNml2 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	54.4	3.4e-121
WP_015747336.1|2276552_2276828_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_015747337.1|2276984_2277410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747338.1|2277420_2277789_-	transcriptional activator adenine-specific DNA methyltransferase-like protein	NA	M4QNV0	Tetraselmis_viridis_virus	41.6	2.3e-08
WP_086008617.1|2277831_2279020_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	32.4	6.2e-31
>prophage 8
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	2770596	2835297	6060298	transposase,integrase	Mycobacterium_phage(33.33%)	61	2771525:2771543	2831896:2831934
WP_012814030.1|2770596_2771994_-|transposase	IS1380-like element ISNml2 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	54.4	5.8e-121
2771525:2771543	attL	GCGGTGACCAGGGTGGCGT	NA	NA	NA	NA
WP_015747771.1|2772119_2772266_+	hypothetical protein	NA	NA	NA	NA	NA
2771525:2771543	attL	GCGGTGACCAGGGTGGCGT	NA	NA	NA	NA
WP_015747772.1|2772466_2772799_+|transposase	transposase	transposase	A0A2P1JR43	Mycobacterium_phage	52.5	3.5e-16
WP_015746554.1|2772771_2774625_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2P1CCU8	Gordonia_phage	29.6	5.3e-05
WP_015746553.1|2774621_2775626_-|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	24.6	4.4e-06
WP_015747773.1|2775746_2776685_+|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	62.9	1.9e-104
WP_015747774.1|2776810_2777092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747775.1|2777490_2777811_+	WhiB family transcriptional regulator	NA	NA	NA	NA	NA
WP_015747776.1|2778145_2778460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138180706.1|2778653_2778890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138180138.1|2779580_2780860_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	58.7	5.7e-83
WP_015747780.1|2780930_2782550_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015745763.1|2782546_2783338_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_015747781.1|2783734_2785873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138180140.1|2786337_2786964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041368580.1|2787310_2788573_-|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
2787372:2787390	attR	GCGGTGACCAGGGTGGCGT	NA	NA	NA	NA
WP_015747782.1|2788636_2789737_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
2787372:2787390	attR	GCGGTGACCAGGGTGGCGT	NA	NA	NA	NA
WP_041368580.1|2789848_2791111_+|transposase	IS701 family transposase	transposase	NA	NA	NA	NA
WP_015747783.1|2791433_2792258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052307922.1|2792788_2793136_+	DUF5615 family PIN-like protein	NA	NA	NA	NA	NA
WP_083785820.1|2793642_2793858_-	ester cyclase	NA	NA	NA	NA	NA
WP_138180142.1|2793876_2794041_-	ester cyclase	NA	NA	NA	NA	NA
WP_015747785.1|2794523_2794766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747786.1|2796043_2798533_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_138180144.1|2798523_2799192_+	TniB family NTP-binding protein	NA	NA	NA	NA	NA
WP_015747787.1|2799188_2800031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747788.1|2800334_2800838_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_041368837.1|2800823_2801147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015747790.1|2802584_2802830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083785821.1|2802905_2803856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015747793.1|2805608_2805851_-	TM0996/MTH895 family glutaredoxin-like protein	NA	NA	NA	NA	NA
WP_015747794.1|2805903_2806953_-	permease	NA	NA	NA	NA	NA
WP_052308183.1|2806952_2807276_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015747796.1|2807855_2808272_+	OsmC family protein	NA	NA	NA	NA	NA
WP_138180146.1|2808349_2808709_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015747797.1|2808783_2809128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169312570.1|2809118_2810216_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_015747799.1|2811161_2811476_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA	NA
WP_015747800.1|2811517_2812030_+	DsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA	NA
WP_052307925.1|2813873_2814446_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
WP_015747803.1|2815045_2815735_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.9	8.8e-38
WP_015747804.1|2815731_2816868_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	27.1	5.5e-13
WP_052307926.1|2816955_2818197_-	MFS transporter	NA	NA	NA	NA	NA
WP_052307927.1|2818172_2818436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138180708.1|2818432_2819326_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_138180148.1|2819413_2819884_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138180150.1|2820281_2820914_-	DUF2202 domain-containing protein	NA	NA	NA	NA	NA
WP_015747808.1|2821240_2823745_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015747809.1|2823780_2824959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747810.1|2824992_2825259_-	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_015747811.1|2825305_2825740_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_015747812.1|2825736_2826108_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.2	2.8e-14
WP_041370584.1|2826304_2826637_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_015747814.1|2826623_2828039_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_015747815.1|2828051_2828879_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_015747797.1|2830462_2830807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169312570.1|2830797_2831895_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_083785822.1|2831915_2832215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169312452.1|2832774_2832924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015747818.1|2833118_2833550_+	ester cyclase	NA	NA	NA	NA	NA
WP_015747820.1|2835018_2835297_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	3105880	3157903	6060298	transposase,integrase	Staphylococcus_phage(33.33%)	45	3132107:3132124	3153196:3153213
WP_015748063.1|3105880_3107119_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_138180727.1|3107136_3107580_-	GNAT family acetyltransferase	NA	NA	NA	NA	NA
WP_015748065.1|3107684_3109349_+	peptidoglycan-binding protein	NA	NA	NA	NA	NA
WP_015748066.1|3109345_3110038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748067.1|3110034_3111684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041368951.1|3111683_3112133_+	YbjN domain-containing protein	NA	NA	NA	NA	NA
WP_015748068.1|3112137_3113112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748069.1|3113132_3113984_-	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_015748070.1|3114084_3114543_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_015748071.1|3114539_3114896_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015748072.1|3114907_3115354_+	SRPBCC domain-containing protein	NA	NA	NA	NA	NA
WP_015748073.1|3115410_3116436_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015748074.1|3116584_3117898_+	DUF222 domain-containing protein	NA	NA	NA	NA	NA
WP_015748075.1|3118230_3118818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748076.1|3118814_3119759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748077.1|3119871_3120381_+	OsmC family protein	NA	NA	NA	NA	NA
WP_015748078.1|3120394_3121036_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015748079.1|3121051_3121486_-	VOC family protein	NA	NA	NA	NA	NA
WP_015748080.1|3121924_3122572_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_083785842.1|3122617_3123001_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_015748081.1|3123090_3123516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748082.1|3123607_3125077_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015748083.1|3125484_3126117_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_015748084.1|3126432_3126597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748085.1|3126593_3127379_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	1.9e-20
WP_015748086.1|3127360_3128941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748087.1|3128954_3129323_-	VOC family protein	NA	NA	NA	NA	NA
WP_015748088.1|3129383_3129842_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015748089.1|3129949_3130747_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_083786028.1|3131817_3132156_+	DUF1016 family protein	NA	NA	NA	NA	NA
3132107:3132124	attL	GCCGGCGGCGCCCAGGAC	NA	NA	NA	NA
WP_015748090.1|3132219_3133188_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_138180210.1|3133441_3134332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748092.1|3134649_3137460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086008617.1|3137518_3138708_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	32.4	6.2e-31
WP_138180212.1|3138775_3141571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748094.1|3141591_3143934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748095.1|3143965_3144535_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_015748096.1|3144615_3146679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748097.1|3146704_3147853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748098.1|3147907_3150625_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012814020.1|3151091_3152645_-|transposase	IS1182-like element ISNml3 family transposase	transposase	NA	NA	NA	NA
WP_138180214.1|3152738_3153551_-	C40 family peptidase	NA	NA	NA	NA	NA
3153196:3153213	attR	GCCGGCGGCGCCCAGGAC	NA	NA	NA	NA
WP_015748100.1|3153719_3154964_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.1	4.7e-82
WP_015748101.1|3155908_3156226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041368972.1|3156367_3157903_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	3299946	3356547	6060298	transposase,protease,integrase	Caulobacter_phage(33.33%)	38	3336385:3336421	3358386:3358422
WP_041370709.1|3299946_3301074_-|protease	cysteine protease StiP family protein	protease	A0A172Q0S8	Acinetobacter_phage	29.1	6.9e-32
WP_083786032.1|3301124_3302405_-	phosphoribosyltransferase domain-containing protein	NA	A0A172Q0Y1	Acinetobacter_phage	26.0	3.9e-07
WP_015748223.1|3302485_3303649_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA	NA
WP_015748224.1|3303900_3304476_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	39.8	1.6e-32
WP_015748225.1|3304575_3305715_+	DUF475 domain-containing protein	NA	A0A172Q0Y5	Acinetobacter_phage	41.6	3.3e-58
WP_015748226.1|3305761_3306463_+	tellurium resistance protein	NA	NA	NA	NA	NA
WP_015748227.1|3306490_3306946_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_015748228.1|3307099_3309268_-	TerD family protein	NA	NA	NA	NA	NA
WP_015748229.1|3309403_3309985_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	32.3	2.7e-16
WP_015748230.1|3310063_3310639_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	38.3	6.2e-29
WP_015748231.1|3310729_3311308_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	41.7	7.1e-33
WP_015748232.1|3311433_3312744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138180228.1|3312763_3313345_-	TerD family protein	NA	NA	NA	NA	NA
WP_015748234.1|3313326_3313824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748235.1|3313848_3315072_-	toxic anion resistance protein	NA	NA	NA	NA	NA
WP_015748236.1|3315274_3316933_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_086008632.1|3317080_3320068_+	alpha/beta fold hydrolase	NA	A0A2H4PQG7	Staphylococcus_phage	33.9	2.3e-26
WP_041370715.1|3320112_3320988_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_169312507.1|3322261_3322840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041370716.1|3322830_3323475_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_015748240.1|3323505_3325725_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_015748241.1|3325735_3326950_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_015748242.1|3327099_3327312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169312508.1|3327370_3328087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748244.1|3328261_3329719_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_015748245.1|3330036_3330897_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_015748246.1|3330930_3331311_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_083786034.1|3331473_3334137_-	DNA polymerase I	NA	A0A0E3D9U1	Bacillus_phage	35.4	4.0e-38
WP_015748248.1|3334271_3334736_+	hotdog fold thioesterase	NA	NA	NA	NA	NA
WP_015748249.1|3334970_3335840_+	hypothetical protein	NA	NA	NA	NA	NA
3336385:3336421	attL	GTTCCGGGCTCATCCCCGCGGGCGCGGGGAGCACCCT	NA	NA	NA	NA
WP_015748250.1|3338600_3339866_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_052307954.1|3339865_3340279_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.9	5.1e-09
WP_015746537.1|3340273_3340729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746536.1|3340725_3342885_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015746535.1|3342874_3344056_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	50.0	1.2e-05
WP_015748251.1|3345952_3347557_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015747350.1|3347553_3348333_+	ATP-binding protein	NA	A0A1B1IWL7	uncultured_Mediterranean_phage	28.1	9.1e-07
WP_015746559.1|3355242_3356547_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
3358386:3358422	attR	GTTCCGGGCTCATCCCCGCGGGCGCGGGGAGCACCCT	NA	NA	NA	NA
>prophage 11
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	3783513	3831333	6060298	transposase,integrase,tRNA	Tupanvirus(14.29%)	41	3812118:3812135	3821459:3821476
WP_015748635.1|3783513_3785613_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.4	1.3e-103
WP_015748636.1|3785735_3787070_-	NAD(+)/NADH kinase	NA	NA	NA	NA	NA
WP_041369074.1|3787272_3789012_+	sulfate permease	NA	NA	NA	NA	NA
WP_015748638.1|3789040_3789856_+	fructosamine kinase family protein	NA	NA	NA	NA	NA
WP_015748639.1|3790082_3790511_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_015748640.1|3790539_3790722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748641.1|3790862_3791945_-	TerC family protein	NA	A0A291LBC5	Escherichia_phage	40.5	1.4e-50
WP_015748642.1|3792092_3793289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015748643.1|3793325_3793796_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_015748644.1|3793962_3794904_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_015748645.1|3795034_3795718_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041369077.1|3795822_3796128_+	DUF3040 domain-containing protein	NA	NA	NA	NA	NA
WP_015748647.1|3796156_3799426_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_015748648.1|3799435_3799975_-	DinB family protein	NA	NA	NA	NA	NA
WP_015748649.1|3800137_3800659_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_015748650.1|3800695_3801196_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_083785873.1|3801333_3802311_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_015748652.1|3802490_3805196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748653.1|3805316_3806381_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_015748654.1|3806664_3808311_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_138180777.1|3808414_3809593_+	serine hydrolase	NA	NA	NA	NA	NA
WP_138180287.1|3809701_3810472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041369082.1|3810751_3810964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748657.1|3810983_3811436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041370869.1|3811526_3812792_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
3812118:3812135	attL	CCAGAACTTGGCGCCCTC	NA	NA	NA	NA
WP_015746537.1|3813330_3813786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015746536.1|3813782_3815942_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015746535.1|3815931_3817113_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	50.0	1.2e-05
WP_169312512.1|3817695_3819012_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015747350.1|3819183_3819963_-	ATP-binding protein	NA	A0A1B1IWL7	uncultured_Mediterranean_phage	28.1	9.1e-07
WP_015745764.1|3820810_3822199_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	42.4	2.5e-31
3821459:3821476	attR	CCAGAACTTGGCGCCCTC	NA	NA	NA	NA
WP_138180291.1|3823198_3823405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748660.1|3823991_3824294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748661.1|3824946_3825378_-	SsgA family sporulation/cell division regulator	NA	NA	NA	NA	NA
WP_015748662.1|3825843_3826290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748663.1|3826295_3826634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169312513.1|3826648_3826792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748665.1|3826876_3827095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138180292.1|3827131_3827599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748667.1|3827690_3829994_-	transglycosylase SLT domain-containing protein	NA	A0A0E3T6Q7	Gordonia_phage	29.7	2.7e-30
WP_138180138.1|3830054_3831333_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	58.7	5.7e-83
>prophage 12
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	3906188	4023109	6060298	transposase,integrase	Staphylococcus_phage(10.0%)	97	3937127:3937186	4025081:4025124
WP_015748733.1|3906188_3907142_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.3	5.5e-30
WP_015748734.1|3907238_3908606_-|transposase	IS256-like element ISNml4 family transposase	transposase	A0A218MNI5	uncultured_virus	39.0	2.5e-36
WP_138180310.1|3910876_3911584_+	GAF and ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_083785883.1|3912050_3912437_-	WhiB family transcriptional regulator	NA	A0A2D1GQ18	Mycobacterium_phage	43.6	4.9e-06
WP_083786048.1|3912436_3912739_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_015748737.1|3913008_3913647_-	LUD domain-containing protein	NA	NA	NA	NA	NA
WP_015748738.1|3913643_3915149_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_015748739.1|3915237_3915987_-	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_015748740.1|3916063_3917764_-	L-lactate permease	NA	NA	NA	NA	NA
WP_138180312.1|3917955_3918945_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_083785884.1|3919316_3919427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748743.1|3919823_3920207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748744.1|3920328_3920718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748745.1|3920714_3921473_-	ParA family protein	NA	K7R2R7	Vibrio_phage	34.6	1.5e-06
WP_041369111.1|3921670_3922036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748747.1|3924190_3924832_-	recombinase family protein	NA	I1ZBD6	Salisaeta_icosahedral_phage	40.0	3.4e-20
WP_015748748.1|3925043_3925946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748749.1|3926054_3926930_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	30.0	9.5e-13
WP_015748750.1|3926926_3927319_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138180314.1|3927336_3928257_-	recombinase family protein	NA	NA	NA	NA	NA
WP_015748752.1|3928393_3929617_-	TniQ family protein	NA	NA	NA	NA	NA
WP_015748753.1|3929613_3930540_-	TniB family NTP-binding protein	NA	NA	NA	NA	NA
WP_015748754.1|3930559_3932224_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_015748755.1|3932725_3933169_-	DUF1931 family protein	NA	NA	NA	NA	NA
WP_015748756.1|3933307_3933922_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015748757.1|3933965_3935630_-	FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	29.8	4.0e-36
WP_041369119.1|3935607_3935841_-	UBP-type zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_015748758.1|3935884_3936334_-	thioredoxin TrxC	NA	A0A1X9I9P5	Staphylococcus_phage	35.4	5.7e-14
3937127:3937186	attL	GTTATCCCCGGTTCCTGACGCGCCCTCATCACTGTCATCACCGAGCCCTGTCCTGACGTC	NA	NA	NA	NA
WP_015746535.1|3937245_3938427_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	50.0	1.2e-05
3937127:3937186	attL	GTTATCCCCGGTTCCTGACGCGCCCTCATCACTGTCATCACCGAGCCCTGTCCTGACGTC	NA	NA	NA	NA
WP_015746536.1|3938416_3940576_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015746537.1|3940572_3941028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748759.1|3942905_3943226_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015748760.1|3943222_3944197_-	DnaJ domain-containing protein	NA	A0A1V0SF83	Hokovirus	45.8	1.1e-12
WP_015748761.1|3944196_3944730_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_015748762.1|3944735_3946634_-	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	48.6	1.7e-147
WP_086008635.1|3946745_3947171_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041369122.1|3948097_3949423_-|transposase	ISL3-like element ISPfr2 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	76.8	8.8e-196
WP_015748766.1|3950055_3950367_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_015748767.1|3950475_3951417_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015747797.1|3951886_3952231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169312570.1|3952221_3953319_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_041369125.1|3953566_3954799_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015746535.1|3955271_3956453_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	50.0	1.2e-05
3955153:3956441	attR	GTTATCCCCGGTTCCTGACGCGCCCTCATCACTGTCATCACCGAGCCCTGTCCTGACGTCCTGCCATCGTCGTTTCCTCGCAATCAGCGGGTCTTCTTCGACGAGATGGAACGGCAACGATGGCGCAGAGCGTGATGGCCCGACCCGACGGCGGGCCTCGCACGTGGACGGTGATCGATCAGGGATACCGGACGGTCGGACCGGTCGAGGAGTGGCTGGAGGCCCACCGGCATCTTTGGTCGCCGAACACGGTCCGCGGGTACGCGACCGCGCTGAGCCAGTGGTGGACGTTCCTTGAACAGCGGGCCGAGTCCGGGCGGTGGAACGAGATCGGCGTGCCGACGGTGTCGGCGTTCGTGTCCTGGATGCGCAACGGGCGCCGGGTCGAGCGTTCCCTGGTGCCGGAGGACGGGCCGTCGCCGGAGACGATGCAGGCGCGGCTGGCCGCGGTCATCTCCTTCTACACGTGGCACGAAGCCGTGTCCGGCGTTCCGGTGGCCGGCCGGTTGATGCGTGGAGCGCCGCGGCGGGCAGTGGCCCGGGGGCTGCTGTCCCATCTGGATGCCCGCTCGGGGCCCGCTCCGACGTCGCTGGTCCGGGTGCGCCGCAGCCGGCGGCATCGTCCGCCGTTGCTGATGCCCCAGCAGATCCAGGCGATCCTGGATGGCTGCGCCACCTACGATCCAGACACCGGTGAATGGGTCGGAAACCTGCGTGACCGGCTGCTTTTCGCCGTTCTTGCGGAGAGCGGCATGCGGATCGGCGAGGCGTTGGGTTTGCGGATCAGCGACTTCGTGATGGGTCGCGGCGGCACCCCGTTCATCGAGATCGTGCCTCGCGCGGACAACACCAATGGGGCGCGGGTGAAGATGATGCGTCCCCGCCGGGTCTACGTCGGCGCCGATCTCGAGCGGCTGTTCGCCGACTACCTGACCCTCCTGGCCTGCACAGCAGCCGATATGGGCATCGCGGTGGCGGCGGACTCGCCGCTGCTGGTCAACCTGCAACGGCCGCCGCTGCTGGCTGCGCTGCACGAGGGCACCGTCCGCGACAAGACGGCCGCGCTGCGGAAGAAGGGGATCGGCCCGCCCGGGTGGACCCCGCACTGGTTCAGGCATAGCCACGCGACCGCGTTGCTGCTGGCCGGCACGGCGGAGTGGGTGGTGTCCCGTCGGCTGGGGCACGCCCACGTCCAGACCACGCTGGACCTCTACGGCTGGGTCCGCGAGGACGAGGCGCTGCGGGCGGCGGCGAACTGGACGTCGTACGCGTCCAATTGGCGGGTGACC	NA	NA	NA	NA
WP_015746536.1|3956442_3958602_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
3955153:3956441	attR	GTTATCCCCGGTTCCTGACGCGCCCTCATCACTGTCATCACCGAGCCCTGTCCTGACGTCCTGCCATCGTCGTTTCCTCGCAATCAGCGGGTCTTCTTCGACGAGATGGAACGGCAACGATGGCGCAGAGCGTGATGGCCCGACCCGACGGCGGGCCTCGCACGTGGACGGTGATCGATCAGGGATACCGGACGGTCGGACCGGTCGAGGAGTGGCTGGAGGCCCACCGGCATCTTTGGTCGCCGAACACGGTCCGCGGGTACGCGACCGCGCTGAGCCAGTGGTGGACGTTCCTTGAACAGCGGGCCGAGTCCGGGCGGTGGAACGAGATCGGCGTGCCGACGGTGTCGGCGTTCGTGTCCTGGATGCGCAACGGGCGCCGGGTCGAGCGTTCCCTGGTGCCGGAGGACGGGCCGTCGCCGGAGACGATGCAGGCGCGGCTGGCCGCGGTCATCTCCTTCTACACGTGGCACGAAGCCGTGTCCGGCGTTCCGGTGGCCGGCCGGTTGATGCGTGGAGCGCCGCGGCGGGCAGTGGCCCGGGGGCTGCTGTCCCATCTGGATGCCCGCTCGGGGCCCGCTCCGACGTCGCTGGTCCGGGTGCGCCGCAGCCGGCGGCATCGTCCGCCGTTGCTGATGCCCCAGCAGATCCAGGCGATCCTGGATGGCTGCGCCACCTACGATCCAGACACCGGTGAATGGGTCGGAAACCTGCGTGACCGGCTGCTTTTCGCCGTTCTTGCGGAGAGCGGCATGCGGATCGGCGAGGCGTTGGGTTTGCGGATCAGCGACTTCGTGATGGGTCGCGGCGGCACCCCGTTCATCGAGATCGTGCCTCGCGCGGACAACACCAATGGGGCGCGGGTGAAGATGATGCGTCCCCGCCGGGTCTACGTCGGCGCCGATCTCGAGCGGCTGTTCGCCGACTACCTGACCCTCCTGGCCTGCACAGCAGCCGATATGGGCATCGCGGTGGCGGCGGACTCGCCGCTGCTGGTCAACCTGCAACGGCCGCCGCTGCTGGCTGCGCTGCACGAGGGCACCGTCCGCGACAAGACGGCCGCGCTGCGGAAGAAGGGGATCGGCCCGCCCGGGTGGACCCCGCACTGGTTCAGGCATAGCCACGCGACCGCGTTGCTGCTGGCCGGCACGGCGGAGTGGGTGGTGTCCCGTCGGCTGGGGCACGCCCACGTCCAGACCACGCTGGACCTCTACGGCTGGGTCCGCGAGGACGAGGCGCTGCGGGCGGCGGCGAACTGGACGTCGTACGCGTCCAATTGGCGGGTGACC	NA	NA	NA	NA
WP_015746537.1|3958598_3959054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138180138.1|3959997_3961276_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	58.7	5.7e-83
WP_015748770.1|3961307_3964238_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	33.4	4.2e-113
WP_015748771.1|3964368_3966852_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_052307989.1|3966848_3967958_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_138180316.1|3968247_3968508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169312455.1|3968496_3968868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138180320.1|3972007_3972262_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_083786049.1|3972666_3974616_+	ferredoxin	NA	NA	NA	NA	NA
WP_015748778.1|3974605_3975244_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_015748779.1|3975240_3976644_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_015748780.1|3976651_3977506_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_015748781.1|3977781_3978801_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	37.1	2.7e-27
WP_015748782.1|3978891_3979101_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_138180322.1|3979484_3979727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748783.1|3980411_3981113_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	2.6e-29
WP_169312515.1|3981109_3982105_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_052307990.1|3982311_3982845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015745764.1|3982862_3984251_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	42.4	2.5e-31
WP_138180324.1|3984226_3985771_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_015748785.1|3986587_3987217_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_138180325.1|3987717_3988209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748787.1|3988809_3989562_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_041370919.1|3989576_3989909_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_015748789.1|3990500_3990770_+	DUF3040 domain-containing protein	NA	NA	NA	NA	NA
WP_015748790.1|3990830_3991685_+	slipin family protein	NA	NA	NA	NA	NA
WP_015748791.1|3991775_3992003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748792.1|3992175_3993174_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_015748793.1|3993370_3995341_-	aconitate hydratase	NA	NA	NA	NA	NA
WP_015748794.1|3995456_3996689_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_052308210.1|3996681_3997818_-	transaldolase	NA	NA	NA	NA	NA
WP_052308211.1|3997955_3998552_-	GTP cyclohydrolase I FolE	NA	S4VV34	Pandoravirus	46.0	1.4e-36
WP_015748797.1|3998632_3999085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748798.1|3999175_3999877_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015748799.1|3999936_4000305_-	DUF3040 domain-containing protein	NA	NA	NA	NA	NA
WP_086008636.1|4000301_4000940_-	universal stress protein	NA	NA	NA	NA	NA
WP_015748801.1|4000992_4001988_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_015748802.1|4002147_4003896_-	cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_015748803.1|4004064_4004409_+	ferredoxin family protein	NA	NA	NA	NA	NA
WP_052307992.1|4004408_4005134_+	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015748805.1|4005137_4005569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748806.1|4005838_4006216_+	DUF488 family protein	NA	NA	NA	NA	NA
WP_015748807.1|4006841_4008080_+	hemin transporter	NA	NA	NA	NA	NA
WP_015748808.1|4008200_4008839_-	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	40.3	1.9e-23
WP_169312516.1|4009018_4009303_-	ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_015748809.1|4009500_4011171_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_015745763.1|4011167_4011959_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_015748810.1|4011955_4012537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748811.1|4012701_4013178_-	Hsp20 family protein	NA	NA	NA	NA	NA
WP_169312517.1|4013299_4014136_+	ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_083786051.1|4014962_4015328_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015748819.1|4019894_4021178_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_015748820.1|4021414_4023109_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
4025081:4025124	attR	ATCACCAAAACACCCAGATCCGTTCCGTTGCTACGGCGACCCGG	NA	NA	NA	NA
>prophage 13
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	4059932	4100527	6060298	transposase,integrase	Mycobacterium_phage(50.0%)	35	4070269:4070285	4079849:4079865
WP_015746535.1|4059932_4061114_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	50.0	1.2e-05
WP_015746536.1|4061103_4063263_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015746537.1|4063259_4063715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041369125.1|4064110_4065343_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_138180327.1|4065718_4065988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015748846.1|4066002_4067049_+	tellurite resistance/C4-dicarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_169312520.1|4068179_4068821_-|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	69.1	1.6e-70
WP_169312521.1|4068745_4069117_-|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	54.6	2.7e-25
WP_015746553.1|4069237_4070242_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	24.6	4.4e-06
4070269:4070285	attL	CGGGCCGAGGAACCCGG	NA	NA	NA	NA
WP_015747772.1|4072065_4072398_-|transposase	transposase	transposase	A0A2P1JR43	Mycobacterium_phage	52.5	3.5e-16
WP_041370943.1|4072511_4072961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748848.1|4073023_4073248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748849.1|4073349_4075647_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015748850.1|4075897_4076422_-	DUF4389 domain-containing protein	NA	NA	NA	NA	NA
WP_169312570.1|4076481_4077579_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_015747797.1|4077569_4077914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748851.1|4078199_4079015_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_015748852.1|4079011_4079953_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
4079849:4079865	attR	CGGGCCGAGGAACCCGG	NA	NA	NA	NA
WP_015748853.1|4080064_4081033_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_015748854.1|4081579_4082251_+	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_015748856.1|4082770_4083232_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_015748857.1|4083221_4083506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015748858.1|4083536_4083827_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_015748859.1|4083826_4084186_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_015748860.1|4084259_4085324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083785891.1|4085368_4085638_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_169312522.1|4085781_4088994_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_015748863.1|4089396_4091085_+	L-lactate permease	NA	NA	NA	NA	NA
WP_015748864.1|4091184_4091934_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_015748865.1|4091930_4093415_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_015748866.1|4093407_4094046_+	LUD domain-containing protein	NA	NA	NA	NA	NA
WP_015748867.1|4094042_4095035_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_015748734.1|4095783_4097151_+|transposase	IS256-like element ISNml4 family transposase	transposase	A0A218MNI5	uncultured_virus	39.0	2.5e-36
WP_138180333.1|4098198_4099896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052307997.1|4100092_4100527_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 14
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	4958280	4981338	6060298	transposase	Mycobacterium_phage(33.33%)	15	NA	NA
WP_086008611.1|4958280_4959470_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	32.4	6.2e-31
WP_138180404.1|4960274_4960562_-|transposase	transposase	transposase	A0A2P1JZW8	Mycobacterium_phage	46.1	4.3e-15
WP_015749571.1|4960824_4961262_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_138180406.1|4963397_4964828_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_015749573.1|4965139_4967014_+	fibronectin type III domain-containing protein	NA	NA	NA	NA	NA
WP_052308046.1|4967286_4968684_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_015749575.1|4969104_4969944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015749576.1|4969940_4971470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015745798.1|4971731_4973051_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_086008602.1|4973071_4974194_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	34.9	1.6e-33
WP_083785930.1|4974459_4974837_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_015749579.1|4974963_4975950_-	NAD(+) synthase	NA	A0A2L0UZF5	Agrobacterium_phage	25.3	1.7e-05
WP_015749580.1|4975946_4977947_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y1H0	Organic_Lake_phycodnavirus	29.3	6.1e-31
WP_138180408.1|4979017_4979707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015749582.1|4979916_4981338_+|transposase	IS1380 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	39.9	1.7e-75
>prophage 15
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	5803919	5880366	6060298	transposase,protease	Agrobacterium_phage(16.67%)	59	NA	NA
WP_015750279.1|5803919_5804555_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	44.6	1.2e-36
WP_015750280.1|5804557_5805169_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	43.8	5.4e-39
WP_015746281.1|5805371_5806643_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	26.5	2.4e-33
WP_083786075.1|5806992_5807325_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015750282.1|5807691_5808627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015750283.1|5808623_5809250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015750284.1|5809418_5809706_+	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_138180478.1|5809816_5812393_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138180480.1|5812710_5815788_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	A0A127AWB9	Bacillus_phage	32.9	2.6e-12
WP_138180482.1|5815824_5816244_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015750288.1|5816291_5817506_-	molecular chaperone DnaJ	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	33.2	5.0e-12
WP_015750289.1|5817555_5818254_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_015750290.1|5818250_5820101_-	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	45.0	1.7e-136
WP_015750291.1|5820521_5820878_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015750292.1|5820874_5821375_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_015750293.1|5821469_5821910_+	VOC family protein	NA	NA	NA	NA	NA
WP_015750294.1|5821911_5822391_+	VOC family protein	NA	NA	NA	NA	NA
WP_015750295.1|5822414_5823803_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_015750296.1|5823819_5824554_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015750297.1|5824718_5826410_+	L-lactate permease	NA	NA	NA	NA	NA
WP_015750298.1|5826519_5827269_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_015750299.1|5827357_5828839_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_015750300.1|5828831_5829470_+	LUD domain-containing protein	NA	NA	NA	NA	NA
WP_015750301.1|5829542_5830418_-	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_138180891.1|5831000_5832242_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015750303.1|5832243_5833284_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_015748986.1|5833301_5834540_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_052308254.1|5834794_5835583_+	ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	27.7	2.4e-07
WP_015750305.1|5835597_5837355_-	alpha/beta-hydrolase family protein	NA	NA	NA	NA	NA
WP_169312556.1|5837388_5838102_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_015750307.1|5838123_5838531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138180484.1|5838644_5840993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015750309.1|5841407_5841626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015750310.1|5841622_5841931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_083786076.1|5842165_5842810_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_015750311.1|5842898_5844353_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_138180893.1|5844470_5846438_+	glycoside hydrolase family 15 protein	NA	NA	NA	NA	NA
WP_052308091.1|5846969_5847470_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015750314.1|5847469_5849662_+	Rv1355c family protein	NA	NA	NA	NA	NA
WP_015750315.1|5849658_5851539_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	28.0	4.9e-14
WP_169312557.1|5851706_5853731_+	TPM domain-containing protein	NA	NA	NA	NA	NA
WP_015750318.1|5855221_5856751_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	36.8	1.2e-23
WP_138180489.1|5857026_5858763_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	30.3	1.1e-23
WP_015750320.1|5858740_5860081_+	nucleotide sugar dehydrogenase	NA	M1I6A7	Acanthocystis_turfacea_Chlorella_virus	30.7	2.8e-40
WP_169312558.1|5860162_5861359_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_041369470.1|5861432_5862560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015750323.1|5862665_5863976_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_138180895.1|5864061_5864682_-	acetyltransferase	NA	NA	NA	NA	NA
WP_015750325.1|5864690_5865314_-	sugar transferase	NA	NA	NA	NA	NA
WP_015750326.1|5865317_5866463_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_015750327.1|5866678_5868517_+	DUF4012 domain-containing protein	NA	NA	NA	NA	NA
WP_015750328.1|5868453_5869545_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_015750329.1|5869783_5870776_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.1	1.0e-18
WP_015750330.1|5870772_5871606_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_052308092.1|5871615_5874855_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_041369472.1|5874965_5875973_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_015750333.1|5876152_5878366_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_015750334.1|5878681_5879377_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_015750335.1|5879373_5880366_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NC_013235	Nakamurella multipartita DSM 44233, complete sequence	6060298	5957321	6025171	6060298	transposase,tRNA	Mycobacterium_phage(22.22%)	57	NA	NA
WP_083785980.1|5957321_5958083_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_169312474.1|5958437_5959700_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_015750397.1|5959832_5960972_-	ring-opening amidohydrolase	NA	NA	NA	NA	NA
WP_138180495.1|5961385_5962831_+	DUF2029 domain-containing protein	NA	NA	NA	NA	NA
WP_138180497.1|5962879_5963752_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_012814030.1|5963938_5965336_-|transposase	IS1380-like element ISNml2 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	54.4	5.8e-121
WP_015750400.1|5965437_5965992_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	50.3	2.9e-31
WP_015748251.1|5968294_5969899_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_083785981.1|5970256_5971012_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_012814030.1|5971309_5972707_-|transposase	IS1380-like element ISNml2 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	54.4	5.8e-121
WP_015750402.1|5972972_5973242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015750403.1|5973284_5974691_-	glutamate decarboxylase	NA	NA	NA	NA	NA
WP_015750404.1|5974826_5975015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015750405.1|5975021_5976923_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_015750406.1|5976886_5978986_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_015750407.1|5978994_5980257_-	threonine ammonia-lyase IlvA	NA	NA	NA	NA	NA
WP_052308096.1|5980366_5981197_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	32.7	1.9e-23
WP_015750409.1|5981206_5982460_-	ROK family protein	NA	NA	NA	NA	NA
WP_041371746.1|5982577_5983804_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_015750411.1|5983860_5984646_-	sugar ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.2	3.3e-09
WP_015750412.1|5984742_5985867_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_015750413.1|5986348_5987173_-	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_169312559.1|5987249_5988014_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_015750415.1|5988189_5990226_+	MFS transporter	NA	NA	NA	NA	NA
WP_015750416.1|5990229_5990751_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_015750417.1|5990879_5991752_+	pyridoxal kinase PdxY	NA	NA	NA	NA	NA
WP_015750418.1|5991748_5992363_-	carbon monoxide dehydrogenase subunit G	NA	NA	NA	NA	NA
WP_015750419.1|5992359_5994759_-	xanthine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_015750420.1|5994758_5995247_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_015750421.1|5995243_5996101_-	FAD binding domain-containing protein	NA	NA	NA	NA	NA
WP_015750422.1|5996220_5999235_+	DUF1116 domain-containing protein	NA	NA	NA	NA	NA
WP_041369491.1|5999259_5999898_-	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_015750424.1|6000049_6000487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169312560.1|6000628_6001597_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.8	6.5e-39
WP_015750426.1|6001786_6002212_-	VOC family protein	NA	NA	NA	NA	NA
WP_015750427.1|6002231_6004730_-	replicative DNA helicase	NA	G9L681	Escherichia_phage	26.2	1.1e-53
WP_052308259.1|6005612_6007019_+	amino acid permease	NA	NA	NA	NA	NA
WP_015750429.1|6007015_6007978_+	universal stress protein	NA	NA	NA	NA	NA
WP_015750430.1|6008044_6008500_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_015750431.1|6008519_6008756_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_015750432.1|6008815_6009313_-	single-stranded DNA-binding protein	NA	A0A2H4JEL4	uncultured_Caudovirales_phage	82.8	2.2e-51
WP_015750433.1|6009324_6009633_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_041371750.1|6009836_6010199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015750435.1|6010357_6011527_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_138180503.1|6011602_6012064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015750437.1|6012038_6012281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015750438.1|6012398_6013085_-	TIGR00266 family protein	NA	NA	NA	NA	NA
WP_041369496.1|6013846_6015193_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015750440.1|6015231_6016365_-	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA	NA
WP_138180505.1|6016361_6018416_-	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA	NA
WP_086008650.1|6018664_6020131_-	DUF2029 domain-containing protein	NA	NA	NA	NA	NA
WP_015750443.1|6020433_6020832_-	DUF5318 domain-containing protein	NA	NA	NA	NA	NA
WP_015750444.1|6020903_6021149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015750445.1|6021145_6021619_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_052308097.1|6021903_6022530_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_015750447.1|6022526_6023606_+	inositol-3-phosphate synthase	NA	A0A0H4IPK5	Stenotrophomonas_phage	43.4	5.3e-74
WP_138180905.1|6023908_6025171_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
