assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000024285.1_ASM2428v1	NC_013205	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence	1	38911-40569	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,csa3,c2c10_CAS-V-U3,Cas9_archaeal,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas2,cas1,cas4	Orphan	CTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC,CTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC,TTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC	37,37,36	0	0	NA	NA	NA:NA:NA	22,22,22	22	Orphan	cas3,DEDDh,csa3,c2c10_CAS-V-U3,Cas9_archaeal,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas2,cas1,cas4	NA|283aa|up_3|NC_013205.1_32999_33848_-,NA|166aa|down_8|NC_013205.1_48838_49336_+,NA|140aa|down_9|NC_013205.1_49399_49819_+	NA|94aa|up_9|NC_013205.1_26459_26741_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|129aa|up_8|NC_013205.1_27246_27633_+	pfam01527, HTH_Tnp_1, Transposase	NA|397aa|up_7|NC_013205.1_27888_29079_+	TIGR03061, hypothetical_protein_lp_1332, YhgE/Pip N-terminal domain	NA|225aa|up_6|NC_013205.1_29486_30161_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|325aa|up_5|NC_013205.1_30920_31895_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|327aa|up_4|NC_013205.1_32018_32999_+	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|283aa|up_3|NC_013205.1_32999_33848_-	NA	NA|455aa|up_2|NC_013205.1_34000_35365_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|456aa|up_1|NC_013205.1_35361_36729_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|428aa|up_0|NC_013205.1_37186_38470_+	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|408aa|down_0|NC_013205.1_40642_41866_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|306aa|down_1|NC_013205.1_42062_42980_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|358aa|down_2|NC_013205.1_43016_44090_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|507aa|down_3|NC_013205.1_44086_45607_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|357aa|down_4|NC_013205.1_45682_46753_-	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|190aa|down_5|NC_013205.1_47065_47635_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|211aa|down_6|NC_013205.1_47653_48286_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|140aa|down_7|NC_013205.1_48339_48759_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|166aa|down_8|NC_013205.1_48838_49336_+	NA	NA|140aa|down_9|NC_013205.1_49399_49819_+	NA
GCF_000024285.1_ASM2428v1	NC_013205	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence	2	65468-66899	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,csa3,c2c10_CAS-V-U3,Cas9_archaeal,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas2,cas1,cas4	Orphan	GCTTCAATGGGGCCGCCGACGATCTCGGCGGATTAAC,GCTTCAATGGGGCCGCCGACGATCTCGGCGGATTAAC,GTTAATCCGCCGAGATCGTCGGCGGCCCCATTGAAGC	37,37,37	0	0	NA	NA	NA:NA:NA	19,19,18	19	Orphan	cas3,DEDDh,csa3,c2c10_CAS-V-U3,Cas9_archaeal,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas2,cas1,cas4	NA|64aa|up_6|NC_013205.1_57518_57710_+,NA	NA|338aa|up_9|NC_013205.1_54512_55526_-	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|225aa|up_8|NC_013205.1_55674_56349_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|371aa|up_7|NC_013205.1_56345_57458_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|64aa|up_6|NC_013205.1_57518_57710_+	NA	NA|207aa|up_5|NC_013205.1_57743_58364_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|960aa|up_4|NC_013205.1_58516_61396_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|338aa|up_3|NC_013205.1_61571_62585_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|184aa|up_2|NC_013205.1_62581_63133_+	pfam04309, G3P_antiterm, Glycerol-3-phosphate responsive antiterminator	NA|574aa|up_1|NC_013205.1_63153_64875_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_0|NC_013205.1_64871_65345_-	smart00422, HTH_MERR, helix_turn_helix, mercury resistance	NA|328aa|down_0|NC_013205.1_67338_68322_+	pfam01384, PHO4, Phosphate transporter family	NA|212aa|down_1|NC_013205.1_68318_68954_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|502aa|down_2|NC_013205.1_69154_70660_+	PRK00047, glpK, glycerol kinase GlpK	NA|565aa|down_3|NC_013205.1_70813_72508_+	NF033461, glycerol3P_ox_1, type 1 glycerol-3-phosphate oxidase	NA|627aa|down_4|NC_013205.1_72698_74579_+	cd04056, Peptidases_S53, Peptidase domain in the S53 family	NA|235aa|down_5|NC_013205.1_74710_75415_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|250aa|down_6|NC_013205.1_75457_76207_+	cd05233, SDR_c, classical (c) SDRs	NA|691aa|down_7|NC_013205.1_76218_78291_+	COG3661, AguA, Alpha-glucuronidase [Carbohydrate transport and metabolism]	NA|203aa|down_8|NC_013205.1_78407_79016_+	pfam10067, DUF2306, Predicted membrane protein (DUF2306)	NA|504aa|down_9|NC_013205.1_79090_80602_-	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
GCF_000024285.1_ASM2428v1	NC_013205	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence	3	2733235-2733559	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	csb2gr5,cas7,cas8u1,cas3,cas2,cas1,cas4	cas3,DEDDh,csa3,c2c10_CAS-V-U3,Cas9_archaeal,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas2,cas1,cas4	Unclear	GTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC,GTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC,GTTGTTCCGCCGAGATCGTCGGCGGCCCCATTGAAGC	37,37,37	0	0	NA	NA	NA:NA:NA	3,4,4	4	Unclear	cas3,DEDDh,csa3,c2c10_CAS-V-U3,Cas9_archaeal,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas2,cas1,cas4	NA,NA	NA|132aa|up_9|NC_013205.1_2720678_2721074_-	pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family	NA|103aa|up_8|NC_013205.1_2721130_2721439_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|258aa|up_7|NC_013205.1_2721636_2722410_+	pfam01925, TauE, Sulfite exporter TauE/SafE	csb2gr5|541aa|up_6|NC_013205.1_2722498_2724121_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|321aa|up_5|NC_013205.1_2724117_2725080_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas8u1|782aa|up_4|NC_013205.1_2725096_2727442_-	cd09767, Csx17_I-U, CRISPR/Cas system-associated protein Csx17	cas3|874aa|up_3|NC_013205.1_2727431_2730053_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|97aa|up_2|NC_013205.1_2730891_2731182_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|347aa|up_1|NC_013205.1_2731194_2732235_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|213aa|up_0|NC_013205.1_2732222_2732861_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|574aa|down_0|NC_013205.1_2733649_2735371_-	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|490aa|down_1|NC_013205.1_2735760_2737230_-	COG1457, CodB, Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	NA|264aa|down_2|NC_013205.1_2737575_2738367_-	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|284aa|down_3|NC_013205.1_2738445_2739297_-	PRK10904, PRK10904, adenine-specific DNA-methyltransferase	NA|68aa|down_4|NC_013205.1_2739397_2739601_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|87aa|down_5|NC_013205.1_2739641_2739902_-	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|238aa|down_6|NC_013205.1_2740577_2741291_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|183aa|down_7|NC_013205.1_2741322_2741871_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|85aa|down_8|NC_013205.1_2741863_2742118_+	pfam10031, DUF2273, Small integral membrane protein (DUF2273)	NA|125aa|down_9|NC_013205.1_2742191_2742566_-	pfam03780, Asp23, Asp23 family, cell envelope-related function
GCF_000024285.1_ASM2428v1	NC_013205	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence	4	2945305-2946296	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no	csa3	cas3,DEDDh,csa3,c2c10_CAS-V-U3,Cas9_archaeal,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas2,cas1,cas4	Type I-A	GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAG,GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAGG,GTTGATCCGCCGAGATCGTCGGCGGCCCCATTGAAG	36,37,36	0	0	NA	NA	NA:NA:NA	13,13,13	13	Orphan	cas3,DEDDh,csa3,c2c10_CAS-V-U3,Cas9_archaeal,DinG,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,c2c9_V-U4,csb2gr5,cas7,cas8u1,cas2,cas1,cas4	NA,NA|50aa|down_0|NC_013205.1_2946929_2947079_-	NA|322aa|up_9|NC_013205.1_2932057_2933023_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|428aa|up_8|NC_013205.1_2933089_2934373_-	cd13522, PBP2_ABC_oligosaccharides, The periplasmic-binding component of ABC transport systems specific for maltose and related oligosaccharides; possess type 2 periplasmic binding fold	NA|1300aa|up_7|NC_013205.1_2934488_2938388_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|311aa|up_6|NC_013205.1_2938589_2939522_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|251aa|up_5|NC_013205.1_2939557_2940310_+	cd02909, cupin_pirin_N, pirin, N-terminal cupin domain	NA|212aa|up_4|NC_013205.1_2940312_2940948_-	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	csa3|113aa|up_3|NC_013205.1_2941029_2941368_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|466aa|up_2|NC_013205.1_2941409_2942807_-	TIGR00887, Inorganic_phosphate_transporter_PHO84, phosphate:H+ symporter	NA|318aa|up_1|NC_013205.1_2943047_2944001_-	pfam06166, DUF979, Protein of unknown function (DUF979)	NA|237aa|up_0|NC_013205.1_2943997_2944708_-	pfam06149, DUF969, Protein of unknown function (DUF969)	NA|50aa|down_0|NC_013205.1_2946929_2947079_-	NA	NA|429aa|down_1|NC_013205.1_2947212_2948499_-	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|376aa|down_2|NC_013205.1_2948495_2949623_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|289aa|down_3|NC_013205.1_2949658_2950525_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|780aa|down_4|NC_013205.1_2950799_2953139_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|142aa|down_5|NC_013205.1_2953294_2953720_-	pfam00582, Usp, Universal stress protein family	NA|696aa|down_6|NC_013205.1_2953821_2955909_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|301aa|down_7|NC_013205.1_2956208_2957111_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|689aa|down_8|NC_013205.1_2957189_2959256_+	COG1874, LacA, Beta-galactosidase [Carbohydrate transport and metabolism]	NA|405aa|down_9|NC_013205.1_2959354_2960569_-	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]
