assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000024065.1_ASM2406v1	NC_013174	Jonesia denitrificans DSM 20603, complete sequence	1	57821-57909	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas4,WYL,cas3	Orphan	GGTGAGGGGGTGCGGGGCGAGGTGAGGG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas4,WYL,cas3	NA|331aa|up_9|NC_013174.1_43343_44336_-,NA|171aa|up_6|NC_013174.1_47113_47626_+,NA|128aa|up_5|NC_013174.1_48159_48543_+,NA|677aa|up_4|NC_013174.1_49133_51164_+,NA|120aa|down_5|NC_013174.1_65969_66329_-,NA|194aa|down_6|NC_013174.1_66330_66912_-,NA|57aa|down_7|NC_013174.1_67319_67490_-,NA|189aa|down_8|NC_013174.1_67546_68113_-	NA|331aa|up_9|NC_013174.1_43343_44336_-	NA	NA|210aa|up_8|NC_013174.1_44337_44967_-	cd16344, LMWPAP, low molecular weight protein arginine phosphatase	NA|475aa|up_7|NC_013174.1_44966_46391_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|171aa|up_6|NC_013174.1_47113_47626_+	NA	NA|128aa|up_5|NC_013174.1_48159_48543_+	NA	NA|677aa|up_4|NC_013174.1_49133_51164_+	NA	NA|214aa|up_3|NC_013174.1_51222_51864_+	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group	NA|420aa|up_2|NC_013174.1_52047_53307_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|374aa|up_1|NC_013174.1_54806_55928_-	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair]	NA|387aa|up_0|NC_013174.1_56063_57224_-	TIGR04053, sam_11, radical SAM protein, BA_1875 family	NA|213aa|down_0|NC_013174.1_58073_58712_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|510aa|down_1|NC_013174.1_58708_60238_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|208aa|down_2|NC_013174.1_60439_61063_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|down_3|NC_013174.1_61066_61987_-	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold	NA|381aa|down_4|NC_013174.1_62057_63200_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|120aa|down_5|NC_013174.1_65969_66329_-	NA	NA|194aa|down_6|NC_013174.1_66330_66912_-	NA	NA|57aa|down_7|NC_013174.1_67319_67490_-	NA	NA|189aa|down_8|NC_013174.1_67546_68113_-	NA	NA|855aa|down_9|NC_013174.1_68693_71258_+	pfam05270, AbfB, Alpha-L-arabinofuranosidase B (ABFB) domain
GCF_000024065.1_ASM2406v1	NC_013174	Jonesia denitrificans DSM 20603, complete sequence	2	1925892-1925971	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas4,WYL,cas3	Orphan	CTCACCCACGACGGCACCACCAC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas4,WYL,cas3	NA,NA	NA|296aa|up_9|NC_013174.1_1908996_1909884_-	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily	NA|881aa|up_8|NC_013174.1_1909978_1912621_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|274aa|up_7|NC_013174.1_1912750_1913572_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|325aa|up_6|NC_013174.1_1913568_1914543_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|437aa|up_5|NC_013174.1_1914684_1915995_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|426aa|up_4|NC_013174.1_1916227_1917505_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|325aa|up_3|NC_013174.1_1917583_1918558_+	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	NA|419aa|up_2|NC_013174.1_1918567_1919824_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|761aa|up_1|NC_013174.1_1919856_1922139_-	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|688aa|up_0|NC_013174.1_1922151_1924215_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|341aa|down_0|NC_013174.1_1926834_1927857_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|281aa|down_1|NC_013174.1_1927957_1928800_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|321aa|down_2|NC_013174.1_1928967_1929930_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|561aa|down_3|NC_013174.1_1930018_1931701_-	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|950aa|down_4|NC_013174.1_1932035_1934885_+	PLN03080, PLN03080, Probable beta-xylosidase; Provisional	NA|232aa|down_5|NC_013174.1_1935085_1935781_-	PRK03298, PRK03298, endonuclease NucS	NA|147aa|down_6|NC_013174.1_1935801_1936242_-	pfam10739, DUF2550, Protein of unknown function (DUF2550)	NA|93aa|down_7|NC_013174.1_1936258_1936537_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|494aa|down_8|NC_013174.1_1936580_1938062_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|300aa|down_9|NC_013174.1_1938154_1939054_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated
GCF_000024065.1_ASM2406v1	NC_013174	Jonesia denitrificans DSM 20603, complete sequence	3	2415558-2415703	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas4,WYL,cas3	Orphan	TCATCAGACCCCGACGGGGACGGCTGGGGCTGGGAAAACAACCAGTCCTGCAT	53	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas4,WYL,cas3	NA,NA|293aa|down_2|NC_013174.1_2419573_2420452_+,NA|204aa|down_9|NC_013174.1_2428549_2429161_-	NA|844aa|up_9|NC_013174.1_2403287_2405819_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|437aa|up_8|NC_013174.1_2405829_2407140_-	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase	NA|142aa|up_7|NC_013174.1_2407300_2407726_-	pfam13400, Tad, Putative Flp pilus-assembly TadE/G-like	NA|118aa|up_6|NC_013174.1_2407722_2408076_-	pfam07811, TadE, TadE-like protein	NA|73aa|up_5|NC_013174.1_2408201_2408420_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|417aa|up_4|NC_013174.1_2408567_2409818_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|387aa|up_3|NC_013174.1_2409808_2410969_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|266aa|up_2|NC_013174.1_2410965_2411763_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|283aa|up_1|NC_013174.1_2411951_2412800_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|290aa|up_0|NC_013174.1_2413376_2414246_+	pfam01226, Form_Nir_trans, Formate/nitrite transporter	NA|469aa|down_0|NC_013174.1_2415927_2417334_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|679aa|down_1|NC_013174.1_2417478_2419515_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|293aa|down_2|NC_013174.1_2419573_2420452_+	NA	NA|308aa|down_3|NC_013174.1_2420455_2421379_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|178aa|down_4|NC_013174.1_2421375_2421909_-	cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya	NA|315aa|down_5|NC_013174.1_2422050_2422995_+	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|767aa|down_6|NC_013174.1_2423010_2425311_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|333aa|down_7|NC_013174.1_2425386_2426385_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|207aa|down_8|NC_013174.1_2427408_2428029_-	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|204aa|down_9|NC_013174.1_2428549_2429161_-	NA
GCF_000024065.1_ASM2406v1	NC_013174	Jonesia denitrificans DSM 20603, complete sequence	4	2598241-2598342	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas4,WYL,cas3	Orphan	CGCATCGGCAGGTGAGGGAACAACACCGCCACCGGC	36	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas4,WYL,cas3	NA|154aa|up_0|NC_013174.1_2596869_2597331_-,NA|209aa|down_3|NC_013174.1_2600815_2601442_-	NA|321aa|up_9|NC_013174.1_2586286_2587249_-	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|437aa|up_8|NC_013174.1_2587245_2588556_-	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|322aa|up_7|NC_013174.1_2588890_2589856_+	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria	NA|347aa|up_6|NC_013174.1_2589943_2590984_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|429aa|up_5|NC_013174.1_2590958_2592245_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|112aa|up_4|NC_013174.1_2592487_2592823_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|738aa|up_3|NC_013174.1_2592846_2595060_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|127aa|up_2|NC_013174.1_2595220_2595601_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|341aa|up_1|NC_013174.1_2595707_2596730_-	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|154aa|up_0|NC_013174.1_2596869_2597331_-	NA	NA|258aa|down_0|NC_013174.1_2598495_2599269_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|192aa|down_1|NC_013174.1_2599401_2599977_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|270aa|down_2|NC_013174.1_2599996_2600806_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|209aa|down_3|NC_013174.1_2600815_2601442_-	NA	NA|265aa|down_4|NC_013174.1_2601490_2602285_+	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|285aa|down_5|NC_013174.1_2602631_2603486_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|208aa|down_6|NC_013174.1_2603472_2604096_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|866aa|down_7|NC_013174.1_2604187_2606785_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|314aa|down_8|NC_013174.1_2607025_2607967_+	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|336aa|down_9|NC_013174.1_2607963_2608971_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]
