assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	1	1002904-1003730	1,1,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	34,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E	10,13,13,10	13	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NC_012947.1_1001617_1001758_-,NA	NA|434aa|up_9|NC_012947.1_992314_993616_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NC_012947.1_993663_995898_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NC_012947.1_995975_996224_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NC_012947.1_996223_996559_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NC_012947.1_996629_997421_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NC_012947.1_997648_999286_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NC_012947.1_999373_1000672_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NC_012947.1_1000731_1001604_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NC_012947.1_1001617_1001758_-	NA	NA|224aa|up_0|NC_012947.1_1001896_1002568_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NC_012947.1_1004368_1005847_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NC_012947.1_1005873_1007151_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NC_012947.1_1007469_1008255_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NC_012947.1_1008324_1009779_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NC_012947.1_1009800_1011210_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NC_012947.1_1011187_1011967_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NC_012947.1_1011963_1012824_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NC_012947.1_1012971_1013547_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NC_012947.1_1013563_1013824_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NC_012947.1_1013814_1015086_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	2	1021964-1022236	3,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|287aa|up_9|NC_012947.1_1011963_1012824_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NC_012947.1_1012971_1013547_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NC_012947.1_1013563_1013824_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NC_012947.1_1013814_1015086_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_5|NC_012947.1_1015163_1015526_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NC_012947.1_1015844_1017644_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NC_012947.1_1017643_1019356_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NC_012947.1_1019429_1020164_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NC_012947.1_1020428_1020581_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NC_012947.1_1020773_1021886_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NC_012947.1_1022317_1023355_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NC_012947.1_1023606_1024515_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NC_012947.1_1024516_1025944_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NC_012947.1_1025943_1026549_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NC_012947.1_1026598_1026922_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NC_012947.1_1027115_1027427_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NC_012947.1_1027445_1028156_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NC_012947.1_1028155_1028635_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NC_012947.1_1028631_1029681_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NC_012947.1_1029661_1030423_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	3	2090645-2090768	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NC_012947.1_2099664_2099754_+	NA|471aa|up_9|NC_012947.1_2080099_2081512_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NC_012947.1_2082068_2082278_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NC_012947.1_2082732_2083359_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NC_012947.1_2083379_2085482_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NC_012947.1_2085494_2086133_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NC_012947.1_2086196_2086865_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NC_012947.1_2086861_2087647_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NC_012947.1_2087650_2088463_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NC_012947.1_2088474_2090079_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NC_012947.1_2090204_2090510_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NC_012947.1_2091082_2092339_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NC_012947.1_2092379_2093753_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NC_012947.1_2093967_2094609_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NC_012947.1_2094648_2095797_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NC_012947.1_2096087_2097299_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NC_012947.1_2097411_2098344_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NC_012947.1_2098340_2099366_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NC_012947.1_2099664_2099754_+	NA	NA|390aa|down_8|NC_012947.1_2099919_2101089_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NC_012947.1_2101323_2101905_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	4	2709881-2709972	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA|51aa|up_9|NC_012947.1_2698956_2699109_-,NA	NA|51aa|up_9|NC_012947.1_2698956_2699109_-	NA	NA|1321aa|up_8|NC_012947.1_2699220_2703183_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NC_012947.1_2703222_2703861_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NC_012947.1_2704148_2705240_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NC_012947.1_2705239_2705932_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NC_012947.1_2705943_2706330_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NC_012947.1_2706337_2707138_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NC_012947.1_2707147_2707738_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NC_012947.1_2707748_2708243_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NC_012947.1_2708263_2709592_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NC_012947.1_2710395_2710992_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NC_012947.1_2711012_2711240_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NC_012947.1_2711277_2712519_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NC_012947.1_2712801_2714061_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NC_012947.1_2714321_2715242_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NC_012947.1_2715241_2715547_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NC_012947.1_2715698_2716298_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NC_012947.1_2716294_2718841_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NC_012947.1_2718840_2720013_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NC_012947.1_2720142_2720835_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	5	3060801-3060945	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCTGATAAGACACGTTAAACGTCACATCAGGCATCGCTTGTCGGATGCGGCGCT	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|36aa|down_6|NC_012947.1_3069033_3069141_+	NA|135aa|up_9|NC_012947.1_3048567_3048972_-	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|98aa|up_8|NC_012947.1_3049121_3049415_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_7|NC_012947.1_3049414_3049528_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_6|NC_012947.1_3049542_3050682_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_5|NC_012947.1_3050697_3052266_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|878aa|up_4|NC_012947.1_3053112_3055746_-	PRK09819, PRK09819, mannosylglycerate hydrolase	NA|639aa|up_3|NC_012947.1_3055763_3057680_-	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|241aa|up_2|NC_012947.1_3057848_3058571_+	PRK09764, PRK09764, GntR family transcriptional regulator	NA|290aa|up_1|NC_012947.1_3058674_3059544_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_0|NC_012947.1_3059543_3060710_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|down_0|NC_012947.1_3061075_3062293_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|down_1|NC_012947.1_3062307_3065109_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_2|NC_012947.1_3065409_3066126_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_3|NC_012947.1_3066141_3067908_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_4|NC_012947.1_3067907_3068255_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|135aa|down_5|NC_012947.1_3068248_3068653_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_6|NC_012947.1_3069033_3069141_+	NA	NA|428aa|down_7|NC_012947.1_3069346_3070630_+	PRK05614, gltA, citrate synthase	NA|189aa|down_8|NC_012947.1_3071019_3071586_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|down_9|NC_012947.1_3071636_3074096_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	6	3405762-3405906	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|28aa|down_2|NC_012947.1_3408728_3408812_-	NA|357aa|up_9|NC_012947.1_3390900_3391971_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NC_012947.1_3392063_3392645_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NC_012947.1_3392649_3394467_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NC_012947.1_3394622_3395996_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NC_012947.1_3396071_3397391_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NC_012947.1_3397797_3399093_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NC_012947.1_3399150_3399840_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NC_012947.1_3400029_3401232_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NC_012947.1_3401228_3404375_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NC_012947.1_3404500_3405685_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NC_012947.1_3405929_3406838_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NC_012947.1_3406962_3407874_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NC_012947.1_3408728_3408812_-	NA	NA|95aa|down_3|NC_012947.1_3409297_3409582_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NC_012947.1_3409653_3410331_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NC_012947.1_3410588_3410780_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NC_012947.1_3410829_3411354_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NC_012947.1_3411536_3411995_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NC_012947.1_3412114_3412924_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NC_012947.1_3412940_3414056_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	7	3529576-3529672	7	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|134aa|up_9|NC_012947.1_3519659_3520061_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_8|NC_012947.1_3520118_3521363_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_7|NC_012947.1_3521454_3521913_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_6|NC_012947.1_3522173_3523631_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_5|NC_012947.1_3524656_3525109_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NC_012947.1_3525118_3525517_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NC_012947.1_3525519_3525813_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NC_012947.1_3525864_3526920_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NC_012947.1_3526990_3527776_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NC_012947.1_3527720_3529460_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NC_012947.1_3529675_3530173_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NC_012947.1_3530348_3531122_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NC_012947.1_3531307_3531568_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NC_012947.1_3531570_3531849_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NC_012947.1_3532004_3532745_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NC_012947.1_3532715_3533483_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NC_012947.1_3533688_3534267_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NC_012947.1_3534506_3536951_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NC_012947.1_3536993_3537467_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NC_012947.1_3537620_3538391_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	8	3744784-3744925	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|444aa|up_9|NC_012947.1_3732387_3733719_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_8|NC_012947.1_3733775_3734063_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_7|NC_012947.1_3734059_3735346_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_6|NC_012947.1_3735396_3736338_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_5|NC_012947.1_3736352_3737123_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_4|NC_012947.1_3737596_3739111_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_3|NC_012947.1_3739141_3740284_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|up_2|NC_012947.1_3741702_3743256_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NC_012947.1_3743364_3744150_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NC_012947.1_3744155_3744746_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NC_012947.1_3744954_3745350_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NC_012947.1_3745611_3748833_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NC_012947.1_3748850_3749999_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NC_012947.1_3750454_3751276_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NC_012947.1_3751442_3752357_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NC_012947.1_3752422_3753373_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NC_012947.1_3753374_3753824_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NC_012947.1_3753948_3754443_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NC_012947.1_3754442_3757259_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NC_012947.1_3757301_3758243_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_000023665.1_ASM2366v1	NC_012947	Escherichia coli 'BL21-Gold(DE3)pLysS AG', complete sequence	9	3946478-3946627	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|551aa|down_6|NC_012947.1_3953741_3955394_-	NA|340aa|up_9|NC_012947.1_3934670_3935690_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NC_012947.1_3935693_3936257_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NC_012947.1_3936473_3937505_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NC_012947.1_3937528_3938293_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NC_012947.1_3938355_3939675_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NC_012947.1_3939741_3940740_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NC_012947.1_3940817_3942320_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NC_012947.1_3942480_3943563_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NC_012947.1_3943562_3944663_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NC_012947.1_3944929_3946441_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NC_012947.1_3946794_3947238_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NC_012947.1_3947237_3950093_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NC_012947.1_3950148_3951345_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NC_012947.1_3951537_3952041_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NC_012947.1_3952086_3952503_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NC_012947.1_3952664_3953669_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|551aa|down_6|NC_012947.1_3953741_3955394_-	NA	NA|151aa|down_7|NC_012947.1_3955516_3955969_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NC_012947.1_3956113_3956707_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NC_012947.1_3956777_3957491_+	PRK12742, PRK12742, SDR family oxidoreductase
