assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	1	369320-370018	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	369608-369649|369683-369715	NC_012943.1_377669-377710|NC_012943.1_376484-376516	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|101aa|up_4|NC_012943.1_366332_366635_+,NA|161aa|down_1|NC_012943.1_379458_379941_-,NA|410aa|down_5|NC_012943.1_382057_383287_+	NA|401aa|up_9|NC_012943.1_359728_360931_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|262aa|up_8|NC_012943.1_361037_361823_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_7|NC_012943.1_361811_362615_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_6|NC_012943.1_362624_364022_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|76aa|up_5|NC_012943.1_366108_366336_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NC_012943.1_366332_366635_+	NA	NA|74aa|up_3|NC_012943.1_366682_366904_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NC_012943.1_366900_367326_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NC_012943.1_367461_368094_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NC_012943.1_368090_368999_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NC_012943.1_378799_379471_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NC_012943.1_379458_379941_-	NA	NA|239aa|down_2|NC_012943.1_379998_380715_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NC_012943.1_380816_381473_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NC_012943.1_381542_382034_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NC_012943.1_382057_383287_+	NA	NA|621aa|down_6|NC_012943.1_383441_385304_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NC_012943.1_385375_385762_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NC_012943.1_385764_386427_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NC_012943.1_386487_387372_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	2	631543-631680	1	CRT	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631561-631578|631561-631578|631645-631662	NC_012943.1_22568-22585|NC_012943.1_3000225-3000208|NC_012943.1_3438739-3438722	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|54aa|up_6|NC_012943.1_622299_622461_-,NA|478aa|up_0|NC_012943.1_628558_629992_-,NA|450aa|down_2|NC_012943.1_633315_634665_-,NA|93aa|down_5|NC_012943.1_636195_636474_-	NA|530aa|up_9|NC_012943.1_618483_620073_+	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]	NA|325aa|up_8|NC_012943.1_620069_621044_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_7|NC_012943.1_621085_622303_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_6|NC_012943.1_622299_622461_-	NA	NA|106aa|up_5|NC_012943.1_622507_622825_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|623aa|up_4|NC_012943.1_622971_624840_+	pfam00934, PE, PE family	NA|336aa|up_3|NC_012943.1_624735_625743_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|265aa|up_2|NC_012943.1_626718_627513_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|355aa|up_1|NC_012943.1_627484_628549_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NC_012943.1_628558_629992_-	NA	NA|211aa|down_0|NC_012943.1_632003_632636_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NC_012943.1_632632_633295_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NC_012943.1_633315_634665_-	NA	NA|381aa|down_3|NC_012943.1_634676_635819_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NC_012943.1_635833_636136_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NC_012943.1_636195_636474_-	NA	NA|418aa|down_6|NC_012943.1_636470_637724_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NC_012943.1_637843_638230_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NC_012943.1_638292_639177_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NC_012943.1_639272_640175_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	3	692277-692353	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA	NA|72aa|up_9|NC_012943.1_677961_678177_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NC_012943.1_678173_678581_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NC_012943.1_678640_679327_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NC_012943.1_679480_682114_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NC_012943.1_682136_684524_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NC_012943.1_684661_685384_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NC_012943.1_685380_686178_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NC_012943.1_686179_687067_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NC_012943.1_687072_688287_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NC_012943.1_689310_690756_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_012943.1_693488_695039_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_012943.1_695090_695483_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_012943.1_695479_695737_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_012943.1_695919_697155_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_012943.1_697405_697819_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_012943.1_697815_698052_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_012943.1_698155_698662_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_012943.1_698775_699246_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_012943.1_699289_700051_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_012943.1_700107_700419_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	4	926462-927409	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927245-927280|927245-927280|927245-927280	NC_012943.1_675380-675345|NC_012943.1_1991383-1991418|NC_012943.1_3198347-3198312	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|184aa|down_2|NC_012943.1_931419_931971_-,NA|147aa|down_8|NC_012943.1_936274_936715_-	NA|685aa|up_9|NC_012943.1_914098_916153_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_012943.1_916318_917488_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_012943.1_917575_918592_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_012943.1_918753_919395_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_012943.1_919475_920531_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_012943.1_920582_920975_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_012943.1_921032_921455_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NC_012943.1_921416_921707_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NC_012943.1_921811_922717_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NC_012943.1_922735_923551_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NC_012943.1_927678_930327_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_012943.1_930794_931439_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_012943.1_931419_931971_-	NA	NA|421aa|down_3|NC_012943.1_932088_933350_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|84aa|down_4|NC_012943.1_933823_934075_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|171aa|down_5|NC_012943.1_934091_934604_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|132aa|down_6|NC_012943.1_934600_934996_-	COG2154, COG2154, Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]	NA|360aa|down_7|NC_012943.1_935046_936126_-	COG2896, MoaA, Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]	NA|147aa|down_8|NC_012943.1_936274_936715_-	NA	NA|528aa|down_9|NC_012943.1_936813_938397_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	5	1290260-1291827	1,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Type III-C,Type III-A,Type III-B,Type III-D	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	21,21,21	21	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|203aa|down_3|NC_012943.1_1296909_1297518_-,NA|104aa|down_4|NC_012943.1_1297937_1298249_-,NA|86aa|down_5|NC_012943.1_1298353_1298611_-,NA|64aa|down_7|NC_012943.1_1300197_1300389_-,NA|135aa|down_8|NC_012943.1_1300385_1300790_-,NA|85aa|down_9|NC_012943.1_1300937_1301192_+	NA|182aa|up_9|NC_012943.1_1280389_1280935_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|241aa|up_8|NC_012943.1_1281334_1282057_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_7|NC_012943.1_1282053_1284492_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_6|NC_012943.1_1284488_1284863_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_5|NC_012943.1_1284872_1285583_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_4|NC_012943.1_1285563_1286472_+	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|376aa|up_3|NC_012943.1_1286468_1287596_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|383aa|up_2|NC_012943.1_1287691_1288840_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cas1|339aa|up_1|NC_012943.1_1288852_1289869_+	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	cas2|114aa|up_0|NC_012943.1_1289869_1290211_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|421aa|down_0|NC_012943.1_1291903_1293165_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_1|NC_012943.1_1294620_1295433_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_2|NC_012943.1_1295429_1296839_-	pfam00665, rve, Integrase core domain	NA|203aa|down_3|NC_012943.1_1296909_1297518_-	NA	NA|104aa|down_4|NC_012943.1_1297937_1298249_-	NA	NA|86aa|down_5|NC_012943.1_1298353_1298611_-	NA	NA|385aa|down_6|NC_012943.1_1298844_1299999_-	pfam00665, rve, Integrase core domain	NA|64aa|down_7|NC_012943.1_1300197_1300389_-	NA	NA|135aa|down_8|NC_012943.1_1300385_1300790_-	NA	NA|85aa|down_9|NC_012943.1_1300937_1301192_+	NA
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	6	1293192-1294472	4,2,4	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,c2c9_V-U4	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Type III-C,Type III-A,Type III-B,Type III-D	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,16,16	17	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|203aa|down_2|NC_012943.1_1296909_1297518_-,NA|104aa|down_3|NC_012943.1_1297937_1298249_-,NA|86aa|down_4|NC_012943.1_1298353_1298611_-,NA|64aa|down_6|NC_012943.1_1300197_1300389_-,NA|135aa|down_7|NC_012943.1_1300385_1300790_-,NA|85aa|down_8|NC_012943.1_1300937_1301192_+	cas6|241aa|up_9|NC_012943.1_1281334_1282057_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_8|NC_012943.1_1282053_1284492_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_7|NC_012943.1_1284488_1284863_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_6|NC_012943.1_1284872_1285583_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_5|NC_012943.1_1285563_1286472_+	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|376aa|up_4|NC_012943.1_1286468_1287596_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm6|383aa|up_3|NC_012943.1_1287691_1288840_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cas1|339aa|up_2|NC_012943.1_1288852_1289869_+	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	cas2|114aa|up_1|NC_012943.1_1289869_1290211_+	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	NA|421aa|up_0|NC_012943.1_1291903_1293165_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_0|NC_012943.1_1294620_1295433_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_1|NC_012943.1_1295429_1296839_-	pfam00665, rve, Integrase core domain	NA|203aa|down_2|NC_012943.1_1296909_1297518_-	NA	NA|104aa|down_3|NC_012943.1_1297937_1298249_-	NA	NA|86aa|down_4|NC_012943.1_1298353_1298611_-	NA	NA|385aa|down_5|NC_012943.1_1298844_1299999_-	pfam00665, rve, Integrase core domain	NA|64aa|down_6|NC_012943.1_1300197_1300389_-	NA	NA|135aa|down_7|NC_012943.1_1300385_1300790_-	NA	NA|85aa|down_8|NC_012943.1_1300937_1301192_+	NA	NA|92aa|down_9|NC_012943.1_1301367_1301643_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	7	2254040-2254181	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	TGAGTATTCCGTCGGTGACGGTTCCGCCGATCACGATTCCGGCTGGCAC	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|127aa|up_5|NC_012943.1_2246142_2246523_+,NA|136aa|down_3|NC_012943.1_2262531_2262939_+	NA|256aa|up_9|NC_012943.1_2241855_2242623_+	PRK05867, PRK05867, SDR family oxidoreductase	NA|258aa|up_8|NC_012943.1_2242626_2243400_-	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|160aa|up_7|NC_012943.1_2243636_2244116_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|621aa|up_6|NC_012943.1_2244123_2245986_-	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|127aa|up_5|NC_012943.1_2246142_2246523_+	NA	NA|447aa|up_4|NC_012943.1_2246559_2247900_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|372aa|up_3|NC_012943.1_2247890_2249006_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|424aa|up_2|NC_012943.1_2249277_2250549_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|288aa|up_1|NC_012943.1_2250586_2251450_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|155aa|up_0|NC_012943.1_2251547_2252012_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|1389aa|down_0|NC_012943.1_2255761_2259928_+	pfam00823, PPE, PPE family	NA|399aa|down_1|NC_012943.1_2260097_2261294_-	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|368aa|down_2|NC_012943.1_2261293_2262397_-	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|136aa|down_3|NC_012943.1_2262531_2262939_+	NA	NA|251aa|down_4|NC_012943.1_2262916_2263669_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|335aa|down_5|NC_012943.1_2263768_2264773_+	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|202aa|down_6|NC_012943.1_2264872_2265478_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|198aa|down_7|NC_012943.1_2265560_2266154_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|148aa|down_8|NC_012943.1_2266267_2266711_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|741aa|down_9|NC_012943.1_2266748_2268971_+	PRK15061, PRK15061, catalase/peroxidase
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	8	2360615-2361655	5	CRT	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	NNCGGCGGNGCCGGCGGN	18	2	6	2360756-2360776|2360756-2360776|2360756-2360776|2360756-2360776|2360855-2360875|2360855-2360875	NC_012943.1_2059190-2059210|NC_012943.1_2922781-2922801|NC_012943.1_2922940-2922960|NC_012943.1_3250464-3250484|NC_012943.1_3320979-3320959|NC_012943.1_3796555-3796575	NA	17	17	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|222aa|down_2|NC_012943.1_2364675_2365341_-	NA|248aa|up_9|NC_012943.1_2349044_2349788_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|163aa|up_8|NC_012943.1_2349784_2350273_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|135aa|up_7|NC_012943.1_2350512_2350917_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_6|NC_012943.1_2350954_2351833_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|up_5|NC_012943.1_2351849_2352182_-	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|308aa|up_4|NC_012943.1_2352243_2353167_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_3|NC_012943.1_2353159_2353789_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|779aa|up_2|NC_012943.1_2353985_2356322_-	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|548aa|up_1|NC_012943.1_2356426_2358070_-	PRK05858, PRK05858, acetolactate synthase	NA|640aa|up_0|NC_012943.1_2358140_2360060_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|488aa|down_0|NC_012943.1_2361810_2363274_-	PRK07121, PRK07121, FAD-binding protein	NA|235aa|down_1|NC_012943.1_2363908_2364613_-	pfam13305, WHG, WHG domain	NA|222aa|down_2|NC_012943.1_2364675_2365341_-	NA	NA|301aa|down_3|NC_012943.1_2365445_2366348_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|144aa|down_4|NC_012943.1_2366756_2367188_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|401aa|down_5|NC_012943.1_2367509_2368712_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|235aa|down_6|NC_012943.1_2368721_2369426_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|119aa|down_7|NC_012943.1_2369579_2369936_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|469aa|down_8|NC_012943.1_2370180_2371587_-	pfam00823, PPE, PPE family	NA|410aa|down_9|NC_012943.1_2371718_2372948_-	pfam00823, PPE, PPE family
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	9	2780020-2780859	6	CRT	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	GNCGGCGGNANCGGCGGC	18	1	1	2780038-2780064	NC_012943.1_2776436-2776462	NA	14	14	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|288aa|up_4|NC_012943.1_2771975_2772839_-,NA|137aa|down_5|NC_012943.1_2790043_2790454_+,NA|38aa|down_6|NC_012943.1_2790503_2790617_+	NA|269aa|up_9|NC_012943.1_2766473_2767280_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|592aa|up_8|NC_012943.1_2767327_2769103_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|314aa|up_7|NC_012943.1_2769258_2770200_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|up_6|NC_012943.1_2770196_2770982_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|311aa|up_5|NC_012943.1_2771093_2772026_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|288aa|up_4|NC_012943.1_2771975_2772839_-	NA	NA|329aa|up_3|NC_012943.1_2772858_2773845_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|422aa|up_2|NC_012943.1_2773872_2775138_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|738aa|up_1|NC_012943.1_2775289_2777503_+	pfam00934, PE, PE family	NA|309aa|up_0|NC_012943.1_2777551_2778478_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|701aa|down_0|NC_012943.1_2783541_2785644_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|374aa|down_1|NC_012943.1_2785660_2786782_+	PRK03343, PRK03343, transaldolase; Validated	NA|515aa|down_2|NC_012943.1_2786778_2788323_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|304aa|down_3|NC_012943.1_2788375_2789287_+	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|248aa|down_4|NC_012943.1_2789283_2790027_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|137aa|down_5|NC_012943.1_2790043_2790454_+	NA	NA|38aa|down_6|NC_012943.1_2790503_2790617_+	NA	NA|162aa|down_7|NC_012943.1_2791048_2791534_+	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|767aa|down_8|NC_012943.1_2791649_2793950_-	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|473aa|down_9|NC_012943.1_2794056_2795475_+	pfam00934, PE, PE family
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	10	3736468-3737315	7	CRT	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGNNNCCNCCGTNNCCGCC	23	0	0	NA	NA	NA	11	11	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|96aa|down_4|NC_012943.1_3751188_3751476_-,NA|88aa|down_9|NC_012943.1_3764596_3764860_-	NA|282aa|up_9|NC_012943.1_3715845_3716691_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NC_012943.1_3717165_3717606_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NC_012943.1_3717639_3718509_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NC_012943.1_3718529_3719540_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NC_012943.1_3719824_3720457_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NC_012943.1_3720523_3721753_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NC_012943.1_3722035_3723385_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NC_012943.1_3723396_3724536_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NC_012943.1_3724532_3725264_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2538aa|up_0|NC_012943.1_3725272_3732886_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NC_012943.1_3739058_3739316_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NC_012943.1_3739571_3749045_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NC_012943.1_3749670_3750117_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NC_012943.1_3750153_3750894_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NC_012943.1_3751188_3751476_-	NA	NA|3717aa|down_5|NC_012943.1_3751812_3762963_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NC_012943.1_3763206_3764001_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NC_012943.1_3764082_3764454_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NC_012943.1_3764351_3764570_-	pfam01565, FAD_binding_4, FAD binding domain	NA|88aa|down_9|NC_012943.1_3764596_3764860_-	NA
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	11	3984005-3984164	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	1	14	3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049|3984029-3984049	NC_012943.1_334771-334751|NC_012943.1_339849-339829|NC_012943.1_528492-528472|NC_012943.1_673684-673664|NC_012943.1_837937-837957|NC_012943.1_840681-840701|NC_012943.1_927876-927856|NC_012943.1_1490824-1490804|NC_012943.1_2776574-2776594|NC_012943.1_3220604-3220624|NC_012943.1_3734492-3734472|NC_012943.1_3796888-3796908|NC_012943.1_3931133-3931153|NC_012943.1_3931178-3931198	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|89aa|down_8|NC_012943.1_3993636_3993903_-,NA|57aa|down_9|NC_012943.1_3993933_3994104_-	NA|305aa|up_9|NC_012943.1_3972854_3973769_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NC_012943.1_3973791_3974571_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NC_012943.1_3974625_3975369_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NC_012943.1_3975368_3976247_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NC_012943.1_3976243_3976996_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NC_012943.1_3977093_3978161_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NC_012943.1_3978157_3980215_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NC_012943.1_3980302_3981172_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NC_012943.1_3981276_3982437_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NC_012943.1_3982501_3983104_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NC_012943.1_3985116_3985905_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NC_012943.1_3985901_3987059_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NC_012943.1_3987106_3988630_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NC_012943.1_3988630_3989764_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NC_012943.1_3989760_3990720_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NC_012943.1_3990716_3991673_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NC_012943.1_3991669_3992836_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NC_012943.1_3992800_3993652_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NC_012943.1_3993636_3993903_-	NA	NA|57aa|down_9|NC_012943.1_3993933_3994104_-	NA
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	12	3984233-3984610	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	AACTCCGGCAGCGGCAATATCGGC	24	3	64	3984257-3984277|3984257-3984277|3984257-3984277|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984302-3984322|3984347-3984367|3984347-3984367|3984347-3984367|3984347-3984367	NC_012943.1_429991-429971|NC_012943.1_430021-430001|NC_012943.1_434305-434285|NC_012943.1_1490824-1490804|NC_012943.1_3220604-3220624|NC_012943.1_132427-132447|NC_012943.1_336540-336520|NC_012943.1_339525-339505|NC_012943.1_528492-528472|NC_012943.1_673414-673394|NC_012943.1_673423-673403|NC_012943.1_673474-673454|NC_012943.1_673483-673463|NC_012943.1_673594-673574|NC_012943.1_674317-674297|NC_012943.1_837937-837957|NC_012943.1_838945-838965|NC_012943.1_840591-840611|NC_012943.1_841926-841946|NC_012943.1_927876-927856|NC_012943.1_1453546-1453566|NC_012943.1_1490722-1490702|NC_012943.1_1611699-1611719|NC_012943.1_2333812-2333832|NC_012943.1_2334283-2334303|NC_012943.1_2432581-2432601|NC_012943.1_2776574-2776594|NC_012943.1_2795257-2795277|NC_012943.1_3026982-3027002|NC_012943.1_3223369-3223389|NC_012943.1_3223423-3223443|NC_012943.1_3319971-3319951|NC_012943.1_3443325-3443345|NC_012943.1_3733993-3733973|NC_012943.1_3734600-3734580|NC_012943.1_3734618-3734598|NC_012943.1_3734669-3734649|NC_012943.1_3734720-3734700|NC_012943.1_3734864-3734844|NC_012943.1_3735794-3735774|NC_012943.1_3735971-3735951|NC_012943.1_3736361-3736341|NC_012943.1_3775776-3775796|NC_012943.1_3915652-3915672|NC_012943.1_3915748-3915768|NC_012943.1_3916744-3916764|NC_012943.1_3916753-3916773|NC_012943.1_3916762-3916782|NC_012943.1_3916771-3916791|NC_012943.1_3916780-3916800|NC_012943.1_3917551-3917571|NC_012943.1_3917746-3917766|NC_012943.1_3923649-3923669|NC_012943.1_3928499-3928519|NC_012943.1_3929198-3929218|NC_012943.1_3929840-3929860|NC_012943.1_3931061-3931081|NC_012943.1_3931178-3931198|NC_012943.1_3931625-3931645|NC_012943.1_3935404-3935424|NC_012943.1_3149351-3149371|NC_012943.1_429991-429971|NC_012943.1_430021-430001|NC_012943.1_434305-434285	NA	6	6	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA,NA|89aa|down_8|NC_012943.1_3993636_3993903_-,NA|57aa|down_9|NC_012943.1_3993933_3994104_-	NA|305aa|up_9|NC_012943.1_3972854_3973769_-	PRK07791, PRK07791, short chain dehydrogenase; Provisional	NA|260aa|up_8|NC_012943.1_3973791_3974571_-	PRK07856, PRK07856, SDR family oxidoreductase	NA|248aa|up_7|NC_012943.1_3974625_3975369_+	PRK07938, PRK07938, enoyl-CoA hydratase family protein	NA|293aa|up_6|NC_012943.1_3975368_3976247_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|251aa|up_5|NC_012943.1_3976243_3976996_+	COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]	NA|356aa|up_4|NC_012943.1_3977093_3978161_+	pfam03060, NMO, Nitronate monooxygenase	NA|686aa|up_3|NC_012943.1_3978157_3980215_+	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit	NA|290aa|up_2|NC_012943.1_3980302_3981172_-	pfam18741, MTES_1575, REase_MTES_1575	NA|387aa|up_1|NC_012943.1_3981276_3982437_-	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|201aa|up_0|NC_012943.1_3982501_3983104_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|263aa|down_0|NC_012943.1_3985116_3985905_-	PRK07831, PRK07831, SDR family oxidoreductase	NA|386aa|down_1|NC_012943.1_3985901_3987059_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|508aa|down_2|NC_012943.1_3987106_3988630_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated	NA|378aa|down_3|NC_012943.1_3988630_3989764_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|320aa|down_4|NC_012943.1_3989760_3990720_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|319aa|down_5|NC_012943.1_3990716_3991673_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|389aa|down_6|NC_012943.1_3991669_3992836_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|284aa|down_7|NC_012943.1_3992800_3993652_-	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|89aa|down_8|NC_012943.1_3993636_3993903_-	NA	NA|57aa|down_9|NC_012943.1_3993933_3994104_-	NA
GCF_000023625.1_ASM2362v1	NC_012943	Mycobacterium tuberculosis KZN 1435, complete sequence	13	4097393-4097481	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas1,cas2,DEDDh,cas4,WYL,DinG,cas3	NA|257aa|up_6|NC_012943.1_4087979_4088750_-,NA|233aa|up_0|NC_012943.1_4096497_4097196_-,NA|126aa|down_6|NC_012943.1_4102716_4103094_+	NA|388aa|up_9|NC_012943.1_4083650_4084814_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_012943.1_4084810_4085863_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_012943.1_4086361_4087225_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_012943.1_4087979_4088750_-	NA	NA|549aa|up_5|NC_012943.1_4088746_4090393_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NC_012943.1_4090389_4091253_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_012943.1_4091245_4092172_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_012943.1_4092173_4093799_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_012943.1_4094506_4096462_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_012943.1_4096497_4097196_-	NA	NA|173aa|down_0|NC_012943.1_4097541_4098060_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_012943.1_4098060_4099044_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_012943.1_4099036_4100230_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_012943.1_4100235_4101057_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_012943.1_4101188_4101872_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_012943.1_4101871_4102609_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_012943.1_4102716_4103094_+	NA	NA|225aa|down_7|NC_012943.1_4103192_4103867_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_012943.1_4103972_4104767_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_012943.1_4104773_4105229_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
