assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	1	461004-461077	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	GTAACGAAACTAGGTAACGTTATT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA,NA	NA|534aa|up_9|NC_012914.1_448104_449706_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|327aa|up_8|NC_012914.1_449856_450837_-	pfam01032, FecCD, FecCD transport family	NA|340aa|up_7|NC_012914.1_450833_451853_-	pfam01032, FecCD, FecCD transport family	NA|322aa|up_6|NC_012914.1_451856_452822_-	COG4594, FecB, ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|271aa|up_5|NC_012914.1_452940_453753_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|278aa|up_4|NC_012914.1_453869_454703_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|up_3|NC_012914.1_454702_455593_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|618aa|up_2|NC_012914.1_455786_457640_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|545aa|up_1|NC_012914.1_457632_459267_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|438aa|up_0|NC_012914.1_459443_460757_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|706aa|down_0|NC_012914.1_461211_463329_+	cd14791, GH36, glycosyl hydrolase family 36 (GH36)	NA|228aa|down_1|NC_012914.1_464427_465111_-	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|114aa|down_2|NC_012914.1_465887_466229_-	TIGR04019, hypothetical_protein, bacillithiol system protein YtxJ	NA|369aa|down_3|NC_012914.1_466418_467525_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|275aa|down_4|NC_012914.1_467514_468339_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|268aa|down_5|NC_012914.1_468316_469120_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|357aa|down_6|NC_012914.1_469116_470187_+	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|710aa|down_7|NC_012914.1_470713_472843_+	pfam00395, SLH, S-layer homology domain	NA|255aa|down_8|NC_012914.1_473008_473773_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_9|NC_012914.1_473753_474446_+	cd05387, BY-kinase, bacterial tyrosine-kinase
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	2	515503-515608	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	ATGCTCCATATACTGCATATCGTGCAACGTAGGCGGA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA|549aa|up_9|NC_012914.1_501512_503159_+,NA|544aa|up_8|NC_012914.1_503190_504822_+,NA|236aa|down_4|NC_012914.1_521640_522348_-	NA|549aa|up_9|NC_012914.1_501512_503159_+	NA	NA|544aa|up_8|NC_012914.1_503190_504822_+	NA	NA|581aa|up_7|NC_012914.1_504968_506711_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|457aa|up_6|NC_012914.1_506707_508078_+	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|544aa|up_5|NC_012914.1_508257_509889_+	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|285aa|up_4|NC_012914.1_510008_510863_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|293aa|up_3|NC_012914.1_510912_511791_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|291aa|up_2|NC_012914.1_511814_512687_+	cd09004, GH43_bXyl-like, Glycosyl hydrolase family 43 protein such as Bacteroides thetaiotaomicron VPI-5482 alpha-L-arabinofuranosidases (BT3675;BT_3675) and (BT3662;BT_3662); includes mostly xylanases	NA|157aa|up_1|NC_012914.1_512879_513350_+	pfam06172, Cupin_5, Cupin superfamily (DUF985)	NA|404aa|up_0|NC_012914.1_513349_514561_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|603aa|down_0|NC_012914.1_515784_517593_-	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|317aa|down_1|NC_012914.1_517932_518883_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|230aa|down_2|NC_012914.1_518911_519601_+	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|467aa|down_3|NC_012914.1_519804_521205_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|236aa|down_4|NC_012914.1_521640_522348_-	NA	NA|290aa|down_5|NC_012914.1_522574_523444_-	cd09025, Aldose_epim_Slr1438, Aldose 1-epimerase, similar to Synechocystis Slr1438	NA|393aa|down_6|NC_012914.1_523626_524805_-	PRK00059, prsA, peptidylprolyl isomerase; Provisional	NA|684aa|down_7|NC_012914.1_525009_527061_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|448aa|down_8|NC_012914.1_527152_528496_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|330aa|down_9|NC_012914.1_528609_529599_+	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	3	546577-547162	1	CRT	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	AATAAGAGNGGAAAAACCGTGCTACAG	27	0	0	NA	NA	NA	9	9	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA|73aa|up_9|NC_012914.1_537826_538045_-,NA|68aa|up_8|NC_012914.1_538157_538361_-,NA|129aa|up_6|NC_012914.1_539694_540081_-,NA|48aa|down_1|NC_012914.1_547815_547959_-,NA|182aa|down_7|NC_012914.1_553700_554246_+	NA|73aa|up_9|NC_012914.1_537826_538045_-	NA	NA|68aa|up_8|NC_012914.1_538157_538361_-	NA	NA|307aa|up_7|NC_012914.1_538454_539375_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|129aa|up_6|NC_012914.1_539694_540081_-	NA	NA|187aa|up_5|NC_012914.1_541377_541938_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|89aa|up_4|NC_012914.1_542006_542273_-	pfam16079, Phage_holin_5_2, Phage holin family Hol44, in holin superfamily V	NA|211aa|up_3|NC_012914.1_543040_543673_-	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|166aa|up_2|NC_012914.1_543699_544197_-	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL	NA|256aa|up_1|NC_012914.1_544448_545216_+	pfam07070, Spo0M, SpoOM protein	NA|358aa|up_0|NC_012914.1_545469_546543_+	pfam06081, ArAE_1, Aromatic acid exporter family member 1	NA|99aa|down_0|NC_012914.1_547496_547793_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|48aa|down_1|NC_012914.1_547815_547959_-	NA	NA|202aa|down_2|NC_012914.1_548054_548660_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|388aa|down_3|NC_012914.1_548720_549884_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|399aa|down_4|NC_012914.1_549929_551126_-	PRK13609, PRK13609, diacylglycerol glucosyltransferase; Provisional	NA|327aa|down_5|NC_012914.1_551303_552284_+	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|423aa|down_6|NC_012914.1_552331_553600_-	PRK08639, PRK08639, threonine dehydratase; Validated	NA|182aa|down_7|NC_012914.1_553700_554246_+	NA	NA|336aa|down_8|NC_012914.1_554375_555383_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|347aa|down_9|NC_012914.1_556807_557848_+	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	4	715187-715261	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	CTAACGAAACTAGGTAACGCTATTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA|97aa|up_3|NC_012914.1_712721_713012_+,NA|96aa|up_0|NC_012914.1_714711_714999_+,NA	NA|254aa|up_9|NC_012914.1_705237_705999_-	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|255aa|up_8|NC_012914.1_706171_706936_+	PRK12747, PRK12747, short chain dehydrogenase; Provisional	NA|699aa|up_7|NC_012914.1_706993_709090_-	COG2936, COG2936, Predicted acyl esterases [General function prediction only]	NA|387aa|up_6|NC_012914.1_709102_710263_-	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|326aa|up_5|NC_012914.1_710275_711253_-	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]	NA|349aa|up_4|NC_012914.1_711391_712438_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|97aa|up_3|NC_012914.1_712721_713012_+	NA	NA|311aa|up_2|NC_012914.1_713028_713961_+	pfam02424, ApbE, ApbE family	NA|208aa|up_1|NC_012914.1_713957_714581_+	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|96aa|up_0|NC_012914.1_714711_714999_+	NA	NA|294aa|down_0|NC_012914.1_715383_716265_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|426aa|down_1|NC_012914.1_716373_717651_+	pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase	NA|104aa|down_2|NC_012914.1_717741_718053_+	pfam17648, DUF5519, Family of unknown function (DUF5519)	NA|82aa|down_3|NC_012914.1_718124_718370_+	pfam08141, SspH, Small acid-soluble spore protein H family	NA|307aa|down_4|NC_012914.1_718469_719390_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_5|NC_012914.1_719358_719904_-	pfam13328, HD_4, HD domain	NA|996aa|down_6|NC_012914.1_720111_723099_-	cd14490, CBM6-CBM35-CBM36_like_1, uncharacterized members of the carbohydrate binding module 6 (CBM6) and CBM35_like superfamily	NA|259aa|down_7|NC_012914.1_724348_725125_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|455aa|down_8|NC_012914.1_725217_726582_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|379aa|down_9|NC_012914.1_726787_727924_+	pfam13350, Y_phosphatase3, Tyrosine phosphatase family
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	5	2107799-2107912	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	CGTCACACCCTCGTCCGCTCGTTCCGCG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA|177aa|up_1|NC_012914.1_2104883_2105414_+,NA|217aa|down_0|NC_012914.1_2108626_2109277_-	NA|495aa|up_9|NC_012914.1_2094452_2095937_+	COG3669, COG3669, Alpha-L-fucosidase [Carbohydrate transport and metabolism]	NA|362aa|up_8|NC_012914.1_2095887_2096973_+	pfam00639, Rotamase, PPIC-type PPIASE domain	NA|280aa|up_7|NC_012914.1_2097087_2097927_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|318aa|up_6|NC_012914.1_2098145_2099099_+	cd18820, GH43_LbAraf43-like, Glycosyl hydrolase family 43 proteins similar to Lactobacillus brevis alpha-L-arabinofuranosidase LbAraf43 and Geobacillus thermoleovorans GbtXyl43B	NA|579aa|up_5|NC_012914.1_2099303_2101040_+	cd13584, PBP2_AlgQ1_2, Periplasmic-binding component of alginate-specific ABC uptake system; contains the type 2 periplasmic binding fold	NA|305aa|up_4|NC_012914.1_2101136_2102051_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|300aa|up_3|NC_012914.1_2102069_2102969_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|584aa|up_2|NC_012914.1_2102991_2104743_+	PRK10150, PRK10150, beta-D-glucuronidase; Provisional	NA|177aa|up_1|NC_012914.1_2104883_2105414_+	NA	NA|683aa|up_0|NC_012914.1_2105680_2107729_+	pfam14323, GxGYxYP_C, GxGYxYP putative glycoside hydrolase C-terminal domain	NA|217aa|down_0|NC_012914.1_2108626_2109277_-	NA	NA|329aa|down_1|NC_012914.1_2109588_2110575_+	pfam07486, Hydrolase_2, Cell Wall Hydrolase	NA|190aa|down_2|NC_012914.1_2110708_2111278_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|288aa|down_3|NC_012914.1_2111274_2112138_+	TIGR02172, Fb_sc_TIGR02172, Fibrobacter succinogenes paralogous family TIGR02172	NA|620aa|down_4|NC_012914.1_2112279_2114139_+	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|575aa|down_5|NC_012914.1_2114210_2115935_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|388aa|down_6|NC_012914.1_2115980_2117144_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|423aa|down_7|NC_012914.1_2117318_2118587_+	pfam09861, DUF2088, Domain of unknown function (DUF2088)	NA|258aa|down_8|NC_012914.1_2118614_2119388_+	PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional	NA|270aa|down_9|NC_012914.1_2119396_2120206_+	cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	6	3764006-3764073	5	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,DEDDh,DinG,casR	Type I-A	TTTAGATTTTGATCTTAGATTTCTT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA|77aa|up_6|NC_012914.1_3750235_3750466_-,NA|68aa|up_1|NC_012914.1_3762812_3763016_+,NA|118aa|up_0|NC_012914.1_3763056_3763410_+,NA|180aa|down_8|NC_012914.1_3772843_3773383_-	NA|257aa|up_9|NC_012914.1_3747062_3747833_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|166aa|up_8|NC_012914.1_3748159_3748657_+	cd20302, cupin_DAD, 2,4'-Dihydroxyacetophenone dioxygenase (DAD), cupin domain	NA|434aa|up_7|NC_012914.1_3748793_3750095_+	sd00045, ANK, ankyrin repeats	NA|77aa|up_6|NC_012914.1_3750235_3750466_-	NA	NA|141aa|up_5|NC_012914.1_3750645_3751068_+	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins	NA|58aa|up_4|NC_012914.1_3751444_3751618_+	pfam14285, DUF4367, Domain of unknown function (DUF4367)	NA|644aa|up_3|NC_012914.1_3751988_3753920_+	pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase	NA|2764aa|up_2|NC_012914.1_3754402_3762694_+	COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism]	NA|68aa|up_1|NC_012914.1_3762812_3763016_+	NA	NA|118aa|up_0|NC_012914.1_3763056_3763410_+	NA	NA|341aa|down_0|NC_012914.1_3764334_3765357_-	TIGR03858, LLM_2I7G, probable oxidoreductase, LLM family	NA|139aa|down_1|NC_012914.1_3765359_3765776_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|468aa|down_2|NC_012914.1_3766459_3767863_-	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|297aa|down_3|NC_012914.1_3768001_3768892_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|295aa|down_4|NC_012914.1_3768960_3769845_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|319aa|down_5|NC_012914.1_3769869_3770826_-	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|367aa|down_6|NC_012914.1_3770871_3771972_-	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]	NA|243aa|down_7|NC_012914.1_3771959_3772688_-	cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs	NA|180aa|down_8|NC_012914.1_3772843_3773383_-	NA	NA|171aa|down_9|NC_012914.1_3773682_3774195_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	7	4619198-4619295	6	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	CTTAACGATGCGCGGCATCGTTAAG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA|188aa|up_7|NC_012914.1_4608395_4608959_-,NA	NA|455aa|up_9|NC_012914.1_4605967_4607332_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|276aa|up_8|NC_012914.1_4607489_4608317_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|188aa|up_7|NC_012914.1_4608395_4608959_-	NA	NA|543aa|up_6|NC_012914.1_4609091_4610720_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|597aa|up_5|NC_012914.1_4610735_4612526_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|436aa|up_4|NC_012914.1_4612538_4613846_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|581aa|up_3|NC_012914.1_4614056_4615799_-	cd18820, GH43_LbAraf43-like, Glycosyl hydrolase family 43 proteins similar to Lactobacillus brevis alpha-L-arabinofuranosidase LbAraf43 and Geobacillus thermoleovorans GbtXyl43B	NA|275aa|up_2|NC_012914.1_4615864_4616689_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|298aa|up_1|NC_012914.1_4616693_4617587_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|440aa|up_0|NC_012914.1_4617665_4618985_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|587aa|down_0|NC_012914.1_4619385_4621146_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|311aa|down_1|NC_012914.1_4621309_4622242_+	COG4189, COG4189, Predicted transcriptional regulator [Transcription]	NA|586aa|down_2|NC_012914.1_4622325_4624083_-	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|831aa|down_3|NC_012914.1_4624380_4626873_+	cd08991, GH43_HoAraf43-like, Glycosyl hydrolase family 43 protein such as Halothermothrix orenii H 168  alpha-L-arabinofuranosidase (HoAraf43;Hore_20580)	NA|369aa|down_4|NC_012914.1_4626914_4628021_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|323aa|down_5|NC_012914.1_4628113_4629082_-	cd00599, GH25_muramidase, Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|537aa|down_6|NC_012914.1_4629224_4630835_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|287aa|down_7|NC_012914.1_4631079_4631940_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|387aa|down_8|NC_012914.1_4631968_4633129_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|293aa|down_9|NC_012914.1_4633175_4634054_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	8	5070518-5070744	2	CRT	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	TAGCCGTAACCAGGTCCCATCTCTGCTGG	29	0	0	NA	NA	NA	4	4	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA,NA	NA|131aa|up_9|NC_012914.1_5060901_5061294_+	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family	NA|105aa|up_8|NC_012914.1_5061380_5061695_-	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|379aa|up_7|NC_012914.1_5061728_5062865_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|349aa|up_6|NC_012914.1_5062912_5063959_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|702aa|up_5|NC_012914.1_5063966_5066072_-	TIGR02669, stage_II_sporulation_protein_D, SpoIID/LytB domain	NA|148aa|up_4|NC_012914.1_5066071_5066515_-	pfam04134, DUF393, Protein of unknown function, DUF393	NA|334aa|up_3|NC_012914.1_5066520_5067522_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|213aa|up_2|NC_012914.1_5067542_5068181_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|167aa|up_1|NC_012914.1_5068177_5068678_-	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|218aa|up_0|NC_012914.1_5068839_5069493_-	pfam08955, BofC_C, BofC C-terminal domain	NA|291aa|down_0|NC_012914.1_5072143_5073016_-	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|325aa|down_1|NC_012914.1_5073012_5073987_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|429aa|down_2|NC_012914.1_5074047_5075334_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|146aa|down_3|NC_012914.1_5075352_5075790_-	PRK04435, PRK04435, ACT domain-containing protein	NA|440aa|down_4|NC_012914.1_5075936_5077256_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|246aa|down_5|NC_012914.1_5077269_5078007_-	pfam14689, SPOB_a, Sensor_kinase_SpoOB-type, alpha-helical domain	NA|104aa|down_6|NC_012914.1_5078162_5078474_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|112aa|down_7|NC_012914.1_5078491_5078827_-	pfam04327, Peptidase_Prp, Cysteine protease Prp	NA|104aa|down_8|NC_012914.1_5078839_5079151_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|417aa|down_9|NC_012914.1_5079314_5080565_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	9	5978288-5978612	7	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	TTAAGGTCCCTTAGGGACCTTAA	23	0	0	NA	NA	NA	5	5	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA,NA|99aa|down_1|NC_012914.1_5980626_5980923_-	NA|220aa|up_9|NC_012914.1_5962449_5963109_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|174aa|up_8|NC_012914.1_5963256_5963778_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|330aa|up_7|NC_012914.1_5963857_5964847_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases	NA|224aa|up_6|NC_012914.1_5964918_5965590_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|299aa|up_5|NC_012914.1_5965718_5966615_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|2161aa|up_4|NC_012914.1_5967603_5974086_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|183aa|up_3|NC_012914.1_5974433_5974982_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|280aa|up_2|NC_012914.1_5974994_5975834_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|358aa|up_1|NC_012914.1_5975956_5977030_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|386aa|up_0|NC_012914.1_5977041_5978199_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|493aa|down_0|NC_012914.1_5978947_5980426_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|99aa|down_1|NC_012914.1_5980626_5980923_-	NA	NA|260aa|down_2|NC_012914.1_5981068_5981848_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|273aa|down_3|NC_012914.1_5981831_5982650_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|268aa|down_4|NC_012914.1_5982800_5983604_+	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|320aa|down_5|NC_012914.1_5983658_5984618_-	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|328aa|down_6|NC_012914.1_5984679_5985663_-	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|312aa|down_7|NC_012914.1_5985862_5986798_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_8|NC_012914.1_5986876_5987758_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|538aa|down_9|NC_012914.1_5987779_5989393_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	10	6745951-6746037	8	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,casR	Orphan	TTTTTTCCCTTACAGCTACCCGCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA|163aa|up_3|NC_012914.1_6743372_6743861_-,NA|178aa|up_2|NC_012914.1_6744040_6744574_+,NA|195aa|up_1|NC_012914.1_6744573_6745158_+,NA	NA|251aa|up_9|NC_012914.1_6732913_6733666_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|379aa|up_8|NC_012914.1_6733688_6734825_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|620aa|up_7|NC_012914.1_6735093_6736953_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|503aa|up_6|NC_012914.1_6736964_6738473_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|715aa|up_5|NC_012914.1_6738429_6740574_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|588aa|up_4|NC_012914.1_6741599_6743363_-	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I	NA|163aa|up_3|NC_012914.1_6743372_6743861_-	NA	NA|178aa|up_2|NC_012914.1_6744040_6744574_+	NA	NA|195aa|up_1|NC_012914.1_6744573_6745158_+	NA	NA|182aa|up_0|NC_012914.1_6745225_6745771_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|162aa|down_0|NC_012914.1_6746182_6746668_-	pfam07301, DUF1453, Protein of unknown function (DUF1453)	NA|327aa|down_1|NC_012914.1_6746778_6747759_-	cd19086, AKR_AKR11C1, AKR11C family of aldo-keto reductase (AKR)	NA|486aa|down_2|NC_012914.1_6747860_6749318_-	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase	NA|256aa|down_3|NC_012914.1_6749456_6750224_-	cd00383, trans_reg_C, DNA-binding effector domain of two-component system response regulators	NA|129aa|down_4|NC_012914.1_6750208_6750595_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|483aa|down_5|NC_012914.1_6751044_6752493_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|439aa|down_6|NC_012914.1_6752646_6753963_+	TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative	NA|322aa|down_7|NC_012914.1_6753963_6754929_-	cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG:  Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax	NA|52aa|down_8|NC_012914.1_6755003_6755159_+	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|311aa|down_9|NC_012914.1_6755240_6756173_-	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins
GCF_000023585.1_ASM2358v1	NC_012914	Paenibacillus sp. JDR-2, complete sequence	11	6891262-6891340	9	CRISPRCasFinder	no	WYL	cas3,csa3,WYL,DEDDh,DinG,casR	Unclear	GCTACATTGGATTCTCTACAATAAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,casR	NA|383aa|up_9|NC_012914.1_6881846_6882995_-,NA|234aa|down_0|NC_012914.1_6891454_6892156_-,NA|351aa|down_5|NC_012914.1_6896097_6897150_-	NA|383aa|up_9|NC_012914.1_6881846_6882995_-	NA	NA|418aa|up_8|NC_012914.1_6883156_6884410_-	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|144aa|up_7|NC_012914.1_6884412_6884844_-	cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators	NA|323aa|up_6|NC_012914.1_6885054_6886023_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|215aa|up_5|NC_012914.1_6886087_6886732_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|300aa|up_4|NC_012914.1_6886906_6887806_+	cd01071, PBP2_PhnD_like, Substrate binding domain of phosphonate uptake system-like, a member of the type 2 periplasmic-binding fold superfamily	NA|261aa|up_3|NC_012914.1_6887887_6888670_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|245aa|up_2|NC_012914.1_6888729_6889464_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|263aa|up_1|NC_012914.1_6889554_6890343_+	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|258aa|up_0|NC_012914.1_6890379_6891153_+	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|234aa|down_0|NC_012914.1_6891454_6892156_-	NA	NA|334aa|down_1|NC_012914.1_6892171_6893173_-	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|284aa|down_2|NC_012914.1_6893320_6894172_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|273aa|down_3|NC_012914.1_6894202_6895021_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|194aa|down_4|NC_012914.1_6895136_6895718_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|351aa|down_5|NC_012914.1_6896097_6897150_-	NA	NA|592aa|down_6|NC_012914.1_6897146_6898922_-	PRK14083, PRK14083, HSP90 family protein; Provisional	NA|286aa|down_7|NC_012914.1_6899111_6899969_-	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins	NA|366aa|down_8|NC_012914.1_6900053_6901151_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|237aa|down_9|NC_012914.1_6901134_6901845_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
