The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012856	Ralstonia pickettii 12D chromosome 1, complete sequence	3647724	608828	621135	3647724		Enterobacteria_phage(22.22%)	11	NA	NA
WP_012761335.1|608828_609893_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	45.4	1.1e-82
WP_012761336.1|609882_610800_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	31.7	7.3e-24
WP_012761337.1|610810_611362_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.7	1.4e-46
WP_012761338.1|611442_613326_+	polysaccharide biosynthesis protein	NA	K7Y9E1	Megavirus	27.3	5.9e-20
WP_012761339.1|613673_615035_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	37.7	3.0e-74
WP_012761340.1|615049_616000_+	SDR family oxidoreductase	NA	A0A2K9KZK0	Tupanvirus	47.6	1.1e-86
WP_012761341.1|616033_617035_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA	A0A1V0SAI8	Catovirus	34.4	9.8e-38
WP_012761342.1|617031_618180_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	A0A2K9L470	Tupanvirus	32.8	8.9e-27
WP_012761343.1|618176_619070_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_012761344.1|619069_619840_+	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_012761345.1|619845_621135_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	A0A249XSK4	Mycobacterium_phage	25.0	9.4e-09
>prophage 2
NC_012856	Ralstonia pickettii 12D chromosome 1, complete sequence	3647724	895328	903606	3647724		Bacillus_phage(16.67%)	8	NA	NA
WP_012761560.1|895328_896693_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	39.1	2.4e-79
WP_012761561.1|896731_897664_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	27.7	2.8e-15
WP_012761562.1|897682_898678_+	ADP-glyceromanno-heptose 6-epimerase	NA	Q58M42	Prochlorococcus_phage	34.0	1.8e-28
WP_012761563.1|898816_899131_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012761564.1|899241_900144_+	cysteine synthase CysM	NA	A0A1X9I5F1	Streptococcus_phage	41.2	6.7e-54
WP_012761565.1|900212_901337_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_009238643.1|901468_902392_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	37.0	4.0e-46
WP_012761566.1|902556_903606_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.4	8.1e-35
>prophage 3
NC_012856	Ralstonia pickettii 12D chromosome 1, complete sequence	3647724	1038756	1088168	3647724	protease,transposase,integrase	uncultured_Mediterranean_phage(20.0%)	45	1048117:1048132	1073101:1073116
WP_012761651.1|1038756_1040268_+|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.6	5.6e-21
WP_009238527.1|1040264_1040540_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_012761652.1|1040756_1042556_+	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	42.2	1.8e-21
WP_012761653.1|1042586_1043480_+	signal peptidase I	NA	NA	NA	NA	NA
WP_012761654.1|1043542_1043911_+	DUF4845 domain-containing protein	NA	NA	NA	NA	NA
WP_009238523.1|1043912_1044683_+	ribonuclease III	NA	A0A2P0VNZ5	Tetraselmis_virus	40.5	8.1e-16
WP_004635627.1|1044691_1045630_+	GTPase Era	NA	NA	NA	NA	NA
WP_009238521.1|1045663_1046485_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_009238520.1|1046481_1047273_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_009238519.1|1047269_1047713_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_012761656.1|1047709_1048759_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
1048117:1048132	attL	CGGCAGCAGCAGCGTG	NA	NA	NA	NA
WP_012761657.1|1048835_1049411_-	elongation factor P	NA	NA	NA	NA	NA
WP_012761658.1|1049527_1050721_-	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA	NA
WP_012761659.1|1050812_1052786_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_012761660.1|1052853_1053429_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_009238513.1|1055802_1056516_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012761661.1|1056499_1058179_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012761662.1|1058171_1060505_+	CHASE2 domain-containing protein	NA	NA	NA	NA	NA
WP_012761663.1|1060682_1060883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012761664.1|1060917_1061625_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012761665.1|1061652_1061904_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_012761666.1|1062210_1062966_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012761667.1|1063052_1064423_+	glucarate dehydratase	NA	NA	NA	NA	NA
WP_012761668.1|1064517_1065810_+	MFS transporter	NA	NA	NA	NA	NA
WP_012761669.1|1065820_1068232_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_009277361.1|1068325_1069534_+	porin	NA	NA	NA	NA	NA
WP_012761670.1|1069533_1070469_+	aldose 1-epimerase	NA	NA	NA	NA	NA
WP_012761671.1|1070983_1072222_+|integrase	site-specific integrase	integrase	A0A0M4R586	Salmonella_phage	27.7	1.3e-10
WP_012761672.1|1072825_1073128_+	hypothetical protein	NA	NA	NA	NA	NA
1073101:1073116	attR	CACGCTGCTGCTGCCG	NA	NA	NA	NA
WP_012761673.1|1073127_1073796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103519510.1|1073796_1074108_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012761675.1|1074224_1075103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012761676.1|1075148_1075859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086004663.1|1077701_1077899_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_080517514.1|1077939_1078365_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_146049759.1|1078939_1079155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086004664.1|1080133_1081272_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_080517515.1|1081307_1081793_+	MFS transporter	NA	NA	NA	NA	NA
WP_146049760.1|1081793_1082159_+	MFS transporter	NA	NA	NA	NA	NA
WP_012761681.1|1082223_1082787_-	DUF924 family protein	NA	E3T4R4	Cafeteria_roenbergensis_virus	30.8	2.2e-10
WP_012761682.1|1082828_1083098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012761683.1|1083130_1084507_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_012761684.1|1084572_1085346_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012761685.1|1085458_1086370_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012761686.1|1087130_1088168_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_012856	Ralstonia pickettii 12D chromosome 1, complete sequence	3647724	2272748	2283378	3647724	tRNA	Ralstonia_phage(81.82%)	14	NA	NA
WP_012762511.1|2272748_2273039_-	hypothetical protein	NA	W6CPB2	Ralstonia_phage	44.0	1.2e-09
WP_012762512.1|2273143_2273473_+	hypothetical protein	NA	W6CMZ9	Ralstonia_phage	89.0	9.3e-46
WP_012762513.1|2273673_2273841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012762514.1|2273840_2274161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157039885.1|2274165_2274312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012762515.1|2274321_2274828_+	hypothetical protein	NA	W6CWV3	Ralstonia_phage	77.4	2.9e-38
WP_012762516.1|2275098_2275350_+	hypothetical protein	NA	W6CM39	Ralstonia_phage	88.0	6.4e-31
WP_012762517.1|2275446_2276967_+	hypothetical protein	NA	W6CLR8	Ralstonia_phage	64.0	3.1e-136
WP_012762518.1|2276979_2277309_+	hypothetical protein	NA	W6CWV7	Ralstonia_phage	96.3	6.9e-49
WP_012762519.1|2277310_2278141_+	zonular occludens toxin	NA	W6CPB9	Ralstonia_phage	97.5	2.1e-158
WP_012762521.1|2278733_2279663_+	hypothetical protein	NA	W6CM31	Ralstonia_phage	95.8	1.1e-168
WP_012762523.1|2279862_2280453_-	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	90.3	1.5e-94
WP_012762524.1|2280674_2281991_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.6	1.8e-95
WP_041668241.1|2282070_2283378_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.4	2.0e-75
>prophage 5
NC_012856	Ralstonia pickettii 12D chromosome 1, complete sequence	3647724	2382045	2417232	3647724	terminase,head	Burkholderia_phage(30.3%)	48	NA	NA
WP_012762613.1|2382045_2382591_-	glycoside hydrolase family 19 protein	NA	A0A059VA40	Pseudomonas_phage	66.1	4.2e-59
WP_080517544.1|2382583_2382886_-	hypothetical protein	NA	A0A0P0IYC0	Acinetobacter_phage	49.5	3.0e-19
WP_080517524.1|2383020_2384229_+	acyltransferase	NA	NA	NA	NA	NA
WP_012762616.1|2384350_2384632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080517545.1|2384547_2385276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012762618.1|2385516_2386917_-	hypothetical protein	NA	A9YX14	Burkholderia_phage	65.1	1.2e-17
WP_012762619.1|2386977_2387637_-	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	55.0	1.0e-67
WP_012762620.1|2387638_2388829_-	hypothetical protein	NA	A9YX12	Burkholderia_phage	58.8	9.9e-114
WP_012762621.1|2388825_2389179_-	hypothetical protein	NA	A9YX11	Burkholderia_phage	65.0	8.7e-34
WP_041668263.1|2389187_2389904_-	phage protein	NA	A9YX06	Burkholderia_phage	52.4	1.3e-65
WP_012762623.1|2389896_2390820_-	hypothetical protein	NA	A9YX04	Burkholderia_phage	47.7	4.0e-62
WP_012762624.1|2390816_2391128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012762625.1|2391127_2391742_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	40.9	1.8e-26
WP_012762626.1|2391738_2393637_-	bacteriophage protein	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	33.7	6.9e-85
WP_012762628.1|2393817_2394264_-	hypothetical protein	NA	A0A0N7IRF3	Acinetobacter_phage	31.4	1.8e-12
WP_012762629.1|2394276_2394717_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	53.4	3.0e-39
WP_012762630.1|2394725_2396543_-	DUF3383 family protein	NA	A0A0P0I492	Acinetobacter_phage	36.8	4.2e-87
WP_012762631.1|2396602_2397184_-	hypothetical protein	NA	A9YX29	Burkholderia_phage	63.7	1.5e-62
WP_012762632.1|2397187_2397559_-	hypothetical protein	NA	A9YX28	Burkholderia_phage	55.3	1.2e-28
WP_012762633.1|2397558_2398092_-	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	49.7	1.1e-35
WP_012762634.1|2398088_2398475_-	DUF4054 domain-containing protein	NA	A9YX25	Burkholderia_phage	67.2	1.7e-43
WP_012762635.1|2398471_2398660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041668265.1|2398662_2399697_-	DUF2184 domain-containing protein	NA	A0A0N7IRF2	Acinetobacter_phage	67.7	5.0e-122
WP_012762637.1|2399759_2400245_-	hypothetical protein	NA	A0A0P0I8F3	Acinetobacter_phage	48.4	2.3e-32
WP_012762638.1|2400258_2401563_-	DUF2213 domain-containing protein	NA	A0A0P0IRE1	Acinetobacter_phage	47.6	4.6e-64
WP_157039894.1|2401565_2402207_-|head	phage head morphogenesis protein	head	A9YWZ8	Burkholderia_phage	65.1	7.8e-73
WP_012762640.1|2402148_2403720_-	DUF1073 domain-containing protein	NA	A0A0P0I486	Acinetobacter_phage	61.7	2.9e-153
WP_012762641.1|2403716_2405255_-|terminase	phage terminase large subunit	terminase	W8VT11	Pseudomonas_phage	44.7	1.8e-107
WP_012762642.1|2405211_2405868_-	hypothetical protein	NA	G8C7P2	Escherichia_phage	52.8	2.5e-42
WP_012762644.1|2406626_2406827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012762645.1|2406829_2407180_-	DUF2591 domain-containing protein	NA	F8TVJ2	EBPR_siphovirus	36.0	2.8e-08
WP_012762646.1|2407176_2407602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012762647.1|2407613_2407889_-	hypothetical protein	NA	A0A1I9KFA7	Aeromonas_phage	45.6	7.6e-17
WP_012762648.1|2407885_2408407_-	DUF1367 family protein	NA	NA	NA	NA	NA
WP_012762649.1|2408403_2408814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012762650.1|2408923_2409373_-	HNH endonuclease	NA	T1SAR3	Salmonella_phage	46.0	3.1e-28
WP_012762651.1|2409372_2409585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080517525.1|2409581_2410415_-	hypothetical protein	NA	A0A2H4ZCS2	Klebsiella_phage	41.7	1.6e-22
WP_012762653.1|2410411_2411779_-	replicative DNA helicase	NA	O80281	Escherichia_phage	43.2	1.1e-89
WP_012762654.1|2411775_2412609_-	hypothetical protein	NA	K7ZLF3	Xanthomonas_citri_phage	56.8	3.6e-38
WP_012762655.1|2412766_2413063_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012762656.1|2413076_2413469_-	hypothetical protein	NA	C8CLH2	Xylella_phage	43.3	8.0e-20
WP_041668529.1|2413567_2413798_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012762658.1|2413881_2414760_+	helix-turn-helix domain-containing protein	NA	A0A0D4DBI5	Acinetobacter_phage	38.9	7.8e-23
WP_012762659.1|2415359_2415671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012762660.1|2415674_2415836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012762661.1|2415848_2416205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012762663.1|2416398_2417232_+	pentapeptide repeat-containing protein	NA	U6C6I2	Ralstonia_phage	82.8	9.3e-42
>prophage 6
NC_012856	Ralstonia pickettii 12D chromosome 1, complete sequence	3647724	2463737	2472881	3647724	protease	Methanothermobacter_phage(16.67%)	8	NA	NA
WP_012762702.1|2463737_2464943_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.8	2.5e-40
WP_012762703.1|2464939_2465986_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_009241320.1|2465982_2466429_+	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	62.3	3.0e-47
WP_012762704.1|2466497_2468786_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	1.2e-168
WP_004631954.1|2468782_2469109_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	36.5	1.3e-12
WP_004631953.1|2469686_2469890_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	78.8	2.6e-22
WP_080517526.1|2469915_2470860_+	DUF2501 domain-containing protein	NA	NA	NA	NA	NA
WP_004631917.1|2471630_2472881_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	63.0	2.0e-11
>prophage 7
NC_012856	Ralstonia pickettii 12D chromosome 1, complete sequence	3647724	2572242	2582510	3647724		unidentified_phage(14.29%)	9	NA	NA
WP_012762793.1|2572242_2573805_+	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	34.5	3.3e-24
WP_009241422.1|2573801_2574317_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_012762794.1|2574345_2574990_+	deoxynucleoside kinase	NA	A0A249XZR7	Enterococcus_phage	28.1	1.7e-06
WP_012762795.1|2575046_2575865_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	31.3	4.5e-33
WP_012762796.1|2575876_2576584_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_012762797.1|2576580_2577279_+	energy-coupling factor ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.5	1.6e-07
WP_012762798.1|2577222_2579121_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	37.4	4.4e-55
WP_009241427.1|2579270_2580419_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	28.5	3.9e-22
WP_012762799.1|2580554_2582510_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.7	5.9e-148
>prophage 1
NC_012851	Ralstonia pickettii 12D plasmid pRp12D03, complete sequence	51398	10018	17685	51398		Halomonas_phage(16.67%)	12	NA	NA
WP_004636921.1|10018_10822_-	DUF4942 domain-containing protein	NA	A0A1J0GUW2	Halomonas_phage	26.7	7.9e-22
WP_004636923.1|10833_11058_-	hypothetical protein	NA	A0A0X8WQU3	Ralstonia_phage	43.7	3.2e-05
WP_004636925.1|11121_11355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009242025.1|11452_13324_-	chromosome partitioning protein ParB	NA	G8DH78	Emiliania_huxleyi_virus	28.7	1.1e-26
WP_009242026.1|13389_14217_-	DUF945 domain-containing protein	NA	A0A1S6UA20	Serratia_phage	39.6	2.8e-46
WP_004636209.1|14987_15428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009242029.1|15625_15832_+	hypothetical protein	NA	A0A1B1IVH0	uncultured_Mediterranean_phage	46.7	1.2e-06
WP_009242030.1|15936_16284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004636214.1|16309_16543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009242031.1|16599_16809_-	DUF3717 domain-containing protein	NA	NA	NA	NA	NA
WP_041668849.1|16805_17108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009242032.1|17118_17685_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	34.2	1.1e-17
