The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012791	Variovorax paradoxus S110 chromosome 1, complete sequence	5626353	628447	636961	5626353		Acinetobacter_phage(42.86%)	9	NA	NA
WP_012745736.1|628447_629950_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	29.1	1.2e-36
WP_012745737.1|629946_630339_+	GxxExxY protein	NA	A9YW17	Ostreococcus_tauri_virus	31.0	2.9e-06
WP_012745738.1|630335_630920_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	55.8	2.9e-58
WP_012745739.1|630928_631987_+	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_012745740.1|632005_632665_+	LysE family translocator	NA	NA	NA	NA	NA
WP_012745741.1|632685_633711_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	46.3	2.7e-75
WP_012745742.1|633744_634545_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	50.2	8.9e-58
WP_012745743.1|634541_635261_+	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	47.8	1.8e-49
WP_012745744.1|635767_636961_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	2.6e-13
>prophage 2
NC_012791	Variovorax paradoxus S110 chromosome 1, complete sequence	5626353	943899	1001267	5626353	transposase,holin,protease	Streptococcus_phage(25.0%)	51	NA	NA
WP_012746009.1|943899_944856_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_012746010.1|944898_945726_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_012746011.1|945722_946463_+	DUF3025 domain-containing protein	NA	NA	NA	NA	NA
WP_012746012.1|946615_947488_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_012746013.1|947568_948114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012746014.1|948110_948554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012746015.1|948699_949587_-	ProQ activator of osmoprotectant transporter prop	NA	NA	NA	NA	NA
WP_012746016.1|949643_950273_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_012746017.1|950284_951925_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012746018.1|951997_952918_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	52.9	4.7e-79
WP_012746019.1|953463_953943_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012746020.1|953943_956022_+	FUSC family protein	NA	NA	NA	NA	NA
WP_012746021.1|956018_956225_+	DUF1656 domain-containing protein	NA	NA	NA	NA	NA
WP_012746022.1|956235_957171_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_049826073.1|957167_958658_+	TolC family protein	NA	NA	NA	NA	NA
WP_012746024.1|958660_959875_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_012746025.1|959885_960434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012746026.1|960492_961206_-	RNA-binding protein S4	NA	NA	NA	NA	NA
WP_012746027.1|961202_962876_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_038106782.1|963055_964039_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012746029.1|964060_964981_-	EamA family transporter	NA	NA	NA	NA	NA
WP_012746030.1|966443_966728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012746031.1|966782_967526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012746032.1|967734_967965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012746033.1|968009_970376_+|holin	phospholipase C, phosphocholine-specific	holin	NA	NA	NA	NA
WP_012746034.1|970398_971370_-	esterase	NA	NA	NA	NA	NA
WP_012746035.1|971761_972574_+	TSUP family transporter	NA	NA	NA	NA	NA
WP_012746036.1|972637_972997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012746037.1|973256_974198_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_012746038.1|974327_974618_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_012746039.1|974887_976210_-	DUF3396 domain-containing protein	NA	NA	NA	NA	NA
WP_012746040.1|976488_977760_-	DUF3396 domain-containing protein	NA	NA	NA	NA	NA
WP_012746041.1|977772_978777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012745835.1|978903_979668_-	ATP-binding protein	NA	A0A059VK34	Pseudomonas_phage	27.0	8.3e-05
WP_012746042.1|979664_981278_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_012746043.1|981363_981675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041945632.1|984875_986954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012746046.1|986916_987855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041945442.1|987997_988294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012746048.1|988311_988971_+	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA	NA
WP_012746049.1|988978_989863_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_012746050.1|989859_990558_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_012746051.1|990587_991193_+	YdcF family protein	NA	NA	NA	NA	NA
WP_012746052.1|991176_992247_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	31.0	1.4e-13
WP_012746053.1|992247_993468_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_012746054.1|993553_994603_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_012746055.1|994729_996247_-	YdgA family protein	NA	NA	NA	NA	NA
WP_012746056.1|996964_997588_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_012746057.1|997633_999316_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_012746058.1|999390_999936_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_012746059.1|999938_1001267_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	28.5	1.1e-41
>prophage 3
NC_012791	Variovorax paradoxus S110 chromosome 1, complete sequence	5626353	2590573	2634380	5626353	terminase,portal,protease,capsid,tail,integrase,head	Pseudomonas_phage(11.54%)	71	2582675:2582691	2606633:2606649
2582675:2582691	attL	GGCCGCGGCTGCGGCGA	NA	NA	NA	NA
WP_012747535.1|2590573_2591662_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012747536.1|2591661_2591865_-	excisionase	NA	NA	NA	NA	NA
WP_012747537.1|2591861_2592296_-	HNH endonuclease	NA	Q3HQV7	Burkholderia_phage	56.5	8.0e-37
WP_012747538.1|2592292_2592556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747539.1|2592552_2592711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041945497.1|2592712_2593504_-	hypothetical protein	NA	A0A1P8VV89	Erythrobacter_phage	30.9	2.3e-26
WP_012747541.1|2593500_2594034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747542.1|2594030_2594873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747543.1|2594862_2595261_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_012747544.1|2595466_2595724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747545.1|2595720_2596386_-	hypothetical protein	NA	A0A0M3LP90	Mannheimia_phage	37.8	5.0e-30
WP_012747546.1|2596378_2597194_-	hypothetical protein	NA	E5DV80	Deep-sea_thermophilic_phage	31.2	2.6e-12
WP_012747547.1|2597190_2598405_-	hypothetical protein	NA	A0A2K8HZX9	Pseudomonas_phage	35.5	5.7e-16
WP_012747548.1|2598413_2598557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747549.1|2598553_2598904_-	hypothetical protein	NA	A0A0X8WP99	Ralstonia_phage	37.5	2.9e-13
WP_150106773.1|2598906_2599089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747550.1|2599085_2599265_-	hypothetical protein	NA	A0A0S0N042	Pseudomonas_phage	56.9	4.2e-08
WP_012747551.1|2599261_2599489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747552.1|2599485_2599665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150106774.1|2599661_2599946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150106775.1|2599942_2600131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747554.1|2600151_2600385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041945499.1|2600381_2600585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049826087.1|2600849_2601239_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_167313211.1|2601144_2601519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012747557.1|2601569_2602160_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012747558.1|2602341_2602830_+	pilin	NA	NA	NA	NA	NA
WP_012747559.1|2602878_2603130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041945500.1|2603131_2603617_-	helix-turn-helix transcriptional regulator	NA	Q6J1N3	Burkholderia_virus	44.4	4.3e-07
WP_012747561.1|2603696_2603942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747562.1|2604118_2604601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747563.1|2604600_2605317_+	hypothetical protein	NA	A0A1B0WM60	Flavobacterium_phage	45.5	8.0e-42
WP_012747564.1|2605313_2605559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747565.1|2605558_2605843_+	AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_012747566.1|2605839_2606697_+	hypothetical protein	NA	B5AX23	Iodobacteriophage	42.3	4.8e-17
2606633:2606649	attR	TCGCCGCAGCCGCGGCC	NA	NA	NA	NA
WP_012747567.1|2606689_2607256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747568.1|2607255_2607648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747569.1|2607644_2608049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747570.1|2608045_2608339_+	DUF4406 domain-containing protein	NA	A0A0U4IBL4	Pseudomonas_phage	47.4	2.7e-20
WP_012747571.1|2608335_2608530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747573.1|2608867_2609311_+	DUF1367 family protein	NA	NA	NA	NA	NA
WP_150106776.1|2609301_2609802_+	DUF1364 family protein	NA	NA	NA	NA	NA
WP_012747575.1|2609798_2610023_+	hypothetical protein	NA	C9DGF5	Deftia_phage	66.0	1.1e-10
WP_012747576.1|2610019_2610244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041945502.1|2610317_2611046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150106777.1|2611186_2611396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049826090.1|2612116_2612440_+	HNH endonuclease	NA	A0A0U2C119	Paracoccus_phage	50.5	1.2e-16
WP_012747579.1|2612593_2613085_+|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	56.2	5.6e-39
WP_080515741.1|2613041_2614763_+|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	40.8	3.1e-116
WP_012747581.1|2614753_2616382_+|portal	phage portal protein	portal	Q6JIM9	Burkholderia_virus	30.3	3.2e-38
WP_012747582.1|2616378_2617062_+|protease	Clp protease ClpP	protease	K7PKX4	Enterobacterial_phage	42.9	7.1e-40
WP_012747583.1|2617138_2618590_+|capsid	phage major capsid protein	capsid	A0A222ZHH0	Arthrobacter_phage	24.7	3.2e-05
WP_012747584.1|2618641_2619094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747585.1|2619111_2619378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747586.1|2619382_2620051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041945506.1|2620053_2620425_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_167313228.1|2620471_2620957_+	hypothetical protein	NA	K7P712	Enterobacteria_phage	32.6	8.1e-06
WP_012747589.1|2620953_2621319_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_012747590.1|2621403_2622054_+	hypothetical protein	NA	A0A2I7RHS5	Vibrio_phage	51.4	2.3e-11
WP_012747591.1|2622055_2622283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747592.1|2622279_2622642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747593.1|2622656_2622923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747594.1|2622922_2625478_+	hypothetical protein	NA	A0A2I5ARC1	Synechococcus_phage	33.9	3.2e-08
WP_012747595.1|2625474_2626407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747596.1|2626403_2627282_+	DUF2163 domain-containing protein	NA	I6NQ41	Burkholderia_phage	27.7	2.5e-05
WP_012747597.1|2627278_2627719_+	hypothetical protein	NA	Q5DN20	Alphaproteobacteria_virus	31.2	1.9e-09
WP_012747598.1|2627715_2630946_+	hypothetical protein	NA	A0A1B0V343	Roseobacter_phage	27.0	1.1e-42
WP_012747599.1|2630942_2633180_+	hypothetical protein	NA	K7XYL3	uncultured_Mediterranean_phage	33.7	1.3e-21
WP_012747600.1|2633242_2633575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747601.1|2633571_2633877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012747602.1|2633879_2634380_+	lysozyme	NA	A0A088FRS5	Escherichia_phage	50.6	7.0e-37
>prophage 4
NC_012791	Variovorax paradoxus S110 chromosome 1, complete sequence	5626353	3627244	3634650	5626353		Erwinia_phage(16.67%)	9	NA	NA
WP_012748537.1|3627244_3627691_-	dUTP diphosphatase	NA	G0YQD9	Erwinia_phage	68.7	4.8e-45
WP_012748538.1|3627693_3628143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012748539.1|3628142_3629366_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.3	4.0e-33
WP_012748540.1|3629489_3631169_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.8	1.6e-149
WP_012748541.1|3631165_3632023_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	41.3	7.5e-47
WP_012748542.1|3632019_3632310_+	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_012748543.1|3632344_3633628_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	65.2	2.5e-155
WP_012748544.1|3633645_3633924_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_012748545.1|3634023_3634650_+	nicotinamide mononucleotide transporter	NA	A0A0F6YPU8	Sinorhizobium_phage	25.1	5.0e-08
>prophage 1
NC_012792	Variovorax paradoxus S110 chromosome 2, complete sequence	1128644	1019832	1033571	1128644		Agrobacterium_phage(22.22%)	13	NA	NA
WP_015866306.1|1019832_1021020_+	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	30.8	8.0e-39
WP_015866307.1|1021025_1022726_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	33.7	5.6e-70
WP_015866308.1|1022736_1023813_+	NUDIX domain-containing protein	NA	A0A1B0V161	Roseobacter_phage	37.2	4.7e-54
WP_015866309.1|1023809_1024715_+	ADP-ribosylglycohydrolase family protein	NA	A0A1S6UB21	Serratia_phage	45.7	2.4e-67
WP_015866310.1|1024937_1026767_+	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_015866311.1|1026844_1027519_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.0	1.7e-22
WP_015866312.1|1027505_1028897_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.6	9.8e-20
WP_015866313.1|1029049_1029745_+	TerC family protein	NA	W8EBD0	Pseudomonas_phage	41.0	2.0e-29
WP_015866314.1|1029758_1030193_+	universal stress protein	NA	NA	NA	NA	NA
WP_015866315.1|1030228_1030648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015866316.1|1030644_1031091_-	low affinity iron permease family protein	NA	A0A1C9EHA1	Mycobacterium_phage	36.4	2.2e-05
WP_015866317.1|1031287_1031776_+	DUF2231 domain-containing protein	NA	NA	NA	NA	NA
WP_015866318.1|1031798_1033571_-	ATP-dependent DNA helicase RecQ	NA	Q9DSV4	Diadromus_pulchellus_ascovirus	40.5	4.8e-56
