assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	1	59201-59350	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	CGAGCTCGTACCCAGGCGGCGACGTCGTACTCCCGGGAGTACGAGCTCGCCGGGA	55	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|292aa|up_6|NC_012669.1_52567_53443_-,NA	NA|175aa|up_9|NC_012669.1_49745_50270_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|322aa|up_8|NC_012669.1_50311_51277_+	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein	NA|411aa|up_7|NC_012669.1_51325_52558_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|292aa|up_6|NC_012669.1_52567_53443_-	NA	NA|168aa|up_5|NC_012669.1_53587_54091_+	pfam14016, DUF4232, Protein of unknown function (DUF4232)	NA|212aa|up_4|NC_012669.1_54094_54730_-	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|425aa|up_3|NC_012669.1_54915_56190_-	cd14792, GH27, glycosyl hydrolase family 27 (GH27)	NA|170aa|up_2|NC_012669.1_56586_57096_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|328aa|up_1|NC_012669.1_57151_58135_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|336aa|up_0|NC_012669.1_58131_59139_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|644aa|down_0|NC_012669.1_59500_61432_+	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|552aa|down_1|NC_012669.1_61485_63141_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|321aa|down_2|NC_012669.1_63247_64210_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|319aa|down_3|NC_012669.1_64224_65181_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|229aa|down_4|NC_012669.1_65180_65867_+	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|597aa|down_5|NC_012669.1_65895_67686_+	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|145aa|down_6|NC_012669.1_67870_68305_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|176aa|down_7|NC_012669.1_68460_68988_-	pfam13238, AAA_18, AAA domain	NA|511aa|down_8|NC_012669.1_69196_70729_+	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|287aa|down_9|NC_012669.1_70798_71659_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	2	490490-490593	2	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GGCTGGGCTGGGGGTGCGGGCTG	23	2	5	490513-490530|490513-490530|490554-490570|490554-490570|490554-490570	NC_012669.1_490585-490602|NC_012669.1_1977207-1977190|NC_012669.1_4103545-4103529|NC_012669.1_764422-764438|NC_012669.1_3470233-3470249	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA	NA|255aa|up_9|NC_012669.1_479433_480198_-	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family	NA|239aa|up_8|NC_012669.1_481854_482571_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|445aa|up_7|NC_012669.1_482821_484156_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|280aa|up_6|NC_012669.1_484251_485091_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|259aa|up_5|NC_012669.1_485189_485966_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|245aa|up_4|NC_012669.1_485962_486697_+	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase	NA|317aa|up_3|NC_012669.1_486693_487644_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|349aa|up_2|NC_012669.1_487640_488687_+	pfam16126, DUF4838, Domain of unknown function (DUF4838)	NA|115aa|up_1|NC_012669.1_488785_489130_+	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|439aa|up_0|NC_012669.1_489133_490450_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|361aa|down_0|NC_012669.1_491914_492997_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|939aa|down_1|NC_012669.1_493105_495922_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|124aa|down_2|NC_012669.1_496102_496474_+	pfam07883, Cupin_2, Cupin domain	NA|193aa|down_3|NC_012669.1_496540_497119_+	pfam01872, RibD_C, RibD C-terminal domain	NA|114aa|down_4|NC_012669.1_497167_497509_+	pfam08818, DUF1801, Domain of unknown function (DU1801)	NA|529aa|down_5|NC_012669.1_497733_499320_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|487aa|down_6|NC_012669.1_499524_500985_+	pfam06762, LMF1, Lipase maturation factor	NA|294aa|down_7|NC_012669.1_501037_501919_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|350aa|down_8|NC_012669.1_501911_502961_-	pfam09084, NMT1, NMT1/THI5 like	NA|253aa|down_9|NC_012669.1_502975_503734_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	3	497524-497623	3	CRISPRCasFinder	no	WYL	WYL,csa3,cas3,DEDDh,DinG	Unclear	CTGGCCCACCGGCAGGGGGCGGTCGG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA	NA|317aa|up_9|NC_012669.1_486693_487644_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|349aa|up_8|NC_012669.1_487640_488687_+	pfam16126, DUF4838, Domain of unknown function (DUF4838)	NA|115aa|up_7|NC_012669.1_488785_489130_+	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|439aa|up_6|NC_012669.1_489133_490450_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|309aa|up_5|NC_012669.1_490446_491373_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|361aa|up_4|NC_012669.1_491914_492997_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|939aa|up_3|NC_012669.1_493105_495922_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|124aa|up_2|NC_012669.1_496102_496474_+	pfam07883, Cupin_2, Cupin domain	NA|193aa|up_1|NC_012669.1_496540_497119_+	pfam01872, RibD_C, RibD C-terminal domain	NA|114aa|up_0|NC_012669.1_497167_497509_+	pfam08818, DUF1801, Domain of unknown function (DU1801)	NA|529aa|down_0|NC_012669.1_497733_499320_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|487aa|down_1|NC_012669.1_499524_500985_+	pfam06762, LMF1, Lipase maturation factor	NA|294aa|down_2|NC_012669.1_501037_501919_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|350aa|down_3|NC_012669.1_501911_502961_-	pfam09084, NMT1, NMT1/THI5 like	NA|253aa|down_4|NC_012669.1_502975_503734_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|98aa|down_5|NC_012669.1_503730_504024_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|293aa|down_6|NC_012669.1_504288_505167_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|247aa|down_7|NC_012669.1_505262_506003_-	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif	NA|608aa|down_8|NC_012669.1_506169_507993_-	pfam13196, DUF4012, Protein of unknown function (DUF4012)	NA|867aa|down_9|NC_012669.1_508358_510959_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	4	532784-532876	4	CRISPRCasFinder	no	WYL	WYL,csa3,cas3,DEDDh,DinG	Unclear	TGGGTCAGTGACGTAGGGGCTCGGGGGTGCTGC	33	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|101aa|up_7|NC_012669.1_522425_522728_+,NA|145aa|down_3|NC_012669.1_535101_535536_-,NA|267aa|down_7|NC_012669.1_538664_539465_-,NA|242aa|down_8|NC_012669.1_539472_540198_-	NA|576aa|up_9|NC_012669.1_519539_521267_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|324aa|up_8|NC_012669.1_521238_522210_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|101aa|up_7|NC_012669.1_522425_522728_+	NA	NA|555aa|up_6|NC_012669.1_522926_524591_+	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|322aa|up_5|NC_012669.1_524597_525563_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|293aa|up_4|NC_012669.1_525559_526438_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|546aa|up_3|NC_012669.1_526434_528072_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|830aa|up_2|NC_012669.1_528229_530719_+	cd18616, GH43_ABN-like, Glycosyl hydrolase family 43 such as arabinan endo-1 5-alpha-L-arabinosidase	NA|298aa|up_1|NC_012669.1_530750_531644_-	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|328aa|up_0|NC_012669.1_531738_532722_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|339aa|down_0|NC_012669.1_533005_534022_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|187aa|down_1|NC_012669.1_534058_534619_-	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|90aa|down_2|NC_012669.1_534775_535045_+	pfam08962, DUF1876, Domain of unknown function (DUF1876)	NA|145aa|down_3|NC_012669.1_535101_535536_-	NA	NA|372aa|down_4|NC_012669.1_535732_536848_+	PRK08224, ligC, ATP-dependent DNA ligase; Reviewed	NA|268aa|down_5|NC_012669.1_536869_537673_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|323aa|down_6|NC_012669.1_537669_538638_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|267aa|down_7|NC_012669.1_538664_539465_-	NA	NA|242aa|down_8|NC_012669.1_539472_540198_-	NA	NA|295aa|down_9|NC_012669.1_540251_541136_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	5	1723222-1723295	5	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GACGATACGACCAGATCGACCACG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|243aa|up_9|NC_012669.1_1706412_1707141_+,NA	NA|243aa|up_9|NC_012669.1_1706412_1707141_+	NA	NA|365aa|up_8|NC_012669.1_1707271_1708366_-	COG1637, COG1637, Predicted nuclease of the RecB family [DNA replication, recombination, and repair]	NA|662aa|up_7|NC_012669.1_1708647_1710633_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|352aa|up_6|NC_012669.1_1710857_1711913_+	cd17248, RMtype1_S_AmiI-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Actinosynnema mirum DSM 43827 S subunit (S	NA|1052aa|up_5|NC_012669.1_1712054_1715210_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|163aa|up_4|NC_012669.1_1715673_1716162_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|303aa|up_3|NC_012669.1_1716155_1717064_+	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|378aa|up_2|NC_012669.1_1717714_1718848_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|584aa|up_1|NC_012669.1_1719266_1721018_+	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein	NA|577aa|up_0|NC_012669.1_1721093_1722824_-	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]	NA|455aa|down_0|NC_012669.1_1723363_1724728_-	cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner	NA|273aa|down_1|NC_012669.1_1724724_1725543_-	cd07531, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Bacillus AraL phosphatase, a putative sugar phosphatase	NA|157aa|down_2|NC_012669.1_1725578_1726049_-	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|256aa|down_3|NC_012669.1_1726667_1727435_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|276aa|down_4|NC_012669.1_1727515_1728343_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|452aa|down_5|NC_012669.1_1728387_1729743_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|243aa|down_6|NC_012669.1_1729799_1730528_+	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|525aa|down_7|NC_012669.1_1730543_1732118_+	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases	NA|281aa|down_8|NC_012669.1_1732099_1732942_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|301aa|down_9|NC_012669.1_1732989_1733892_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	6	1738995-1739082	6	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	CGCGGGGCTACGTCACTGACCCGCGTGGTGG	31	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA|179aa|down_0|NC_012669.1_1739142_1739679_-	NA|452aa|up_9|NC_012669.1_1728387_1729743_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|243aa|up_8|NC_012669.1_1729799_1730528_+	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|525aa|up_7|NC_012669.1_1730543_1732118_+	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases	NA|281aa|up_6|NC_012669.1_1732099_1732942_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|301aa|up_5|NC_012669.1_1732989_1733892_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|377aa|up_4|NC_012669.1_1733888_1735019_-	cd15482, Sialidase_non-viral, Non-viral sialidases	NA|445aa|up_3|NC_012669.1_1735015_1736350_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|303aa|up_2|NC_012669.1_1736355_1737264_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|275aa|up_1|NC_012669.1_1737260_1738085_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|224aa|up_0|NC_012669.1_1738243_1738915_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|179aa|down_0|NC_012669.1_1739142_1739679_-	NA	NA|181aa|down_1|NC_012669.1_1739747_1740290_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|339aa|down_2|NC_012669.1_1740328_1741345_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|779aa|down_3|NC_012669.1_1741471_1743808_+	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|422aa|down_4|NC_012669.1_1743858_1745124_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|322aa|down_5|NC_012669.1_1745120_1746086_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|299aa|down_6|NC_012669.1_1746085_1746982_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|1177aa|down_7|NC_012669.1_1747077_1750608_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|457aa|down_8|NC_012669.1_1750761_1752132_-	cd16018, Enpp, Ectonucleotide pyrophosphatase/phosphodiesterase, also called autotaxin	NA|466aa|down_9|NC_012669.1_1752128_1753526_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	7	1750668-1750757	7	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GGGCCTACGGCAGTGACCCGTGTGG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|179aa|up_7|NC_012669.1_1739142_1739679_-,NA	NA|275aa|up_9|NC_012669.1_1737260_1738085_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|224aa|up_8|NC_012669.1_1738243_1738915_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|179aa|up_7|NC_012669.1_1739142_1739679_-	NA	NA|181aa|up_6|NC_012669.1_1739747_1740290_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|339aa|up_5|NC_012669.1_1740328_1741345_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|779aa|up_4|NC_012669.1_1741471_1743808_+	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|422aa|up_3|NC_012669.1_1743858_1745124_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|322aa|up_2|NC_012669.1_1745120_1746086_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|299aa|up_1|NC_012669.1_1746085_1746982_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|1177aa|up_0|NC_012669.1_1747077_1750608_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|457aa|down_0|NC_012669.1_1750761_1752132_-	cd16018, Enpp, Ectonucleotide pyrophosphatase/phosphodiesterase, also called autotaxin	NA|466aa|down_1|NC_012669.1_1752128_1753526_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|308aa|down_2|NC_012669.1_1753562_1754486_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|333aa|down_3|NC_012669.1_1754482_1755481_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|673aa|down_4|NC_012669.1_1755741_1757760_+	cd08577, PI-PLCc_GDPD_SF_unchar3, Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases	NA|785aa|down_5|NC_012669.1_1757892_1760247_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|306aa|down_6|NC_012669.1_1760273_1761191_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|268aa|down_7|NC_012669.1_1761198_1762002_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|437aa|down_8|NC_012669.1_1762163_1763474_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|462aa|down_9|NC_012669.1_1763615_1765001_+	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	8	3649893-3650076	8	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	CCGTGTGGTTCGTCCTGCGAAGGCCCGACACACAGGACGAACCA	44	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|99aa|up_7|NC_012669.1_3641442_3641739_-,NA|165aa|up_6|NC_012669.1_3641869_3642364_+,NA|313aa|down_1|NC_012669.1_3651431_3652370_-,NA|272aa|down_2|NC_012669.1_3652713_3653529_+,NA|103aa|down_3|NC_012669.1_3653553_3653862_-	NA|143aa|up_9|NC_012669.1_3639292_3639721_-	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium	NA|570aa|up_8|NC_012669.1_3639736_3641446_-	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|99aa|up_7|NC_012669.1_3641442_3641739_-	NA	NA|165aa|up_6|NC_012669.1_3641869_3642364_+	NA	NA|185aa|up_5|NC_012669.1_3642374_3642929_-	PRK07922, PRK07922, amino-acid N-acetyltransferase	NA|325aa|up_4|NC_012669.1_3642925_3643900_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|566aa|up_3|NC_012669.1_3644063_3645761_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|253aa|up_2|NC_012669.1_3645846_3646605_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|506aa|up_1|NC_012669.1_3646664_3648182_+	cd07789, FGGY_CsGK_like, Cellulomonas sp	NA|489aa|up_0|NC_012669.1_3648296_3649763_-	cd18832, GH43_GsAbnA-like, Glycosyl hydrolase family 43 protein such as Geobacillus stearothermophilus endo-alpha-1,5-L-arabinanase AbnA	NA|404aa|down_0|NC_012669.1_3650200_3651412_+	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|313aa|down_1|NC_012669.1_3651431_3652370_-	NA	NA|272aa|down_2|NC_012669.1_3652713_3653529_+	NA	NA|103aa|down_3|NC_012669.1_3653553_3653862_-	NA	NA|231aa|down_4|NC_012669.1_3653997_3654690_+	COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]	NA|682aa|down_5|NC_012669.1_3654670_3656716_+	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|141aa|down_6|NC_012669.1_3656744_3657167_-	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c	NA|204aa|down_7|NC_012669.1_3657322_3657934_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|484aa|down_8|NC_012669.1_3657940_3659392_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|314aa|down_9|NC_012669.1_3659477_3660419_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	9	4449893-4450125	1	PILER-CR	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GGGGAACAACCACACGGTGACC	22	0	0	NA	NA	NA	3	3	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA|221aa|down_4|NC_012669.1_4453601_4454264_-	NA|456aa|up_9|NC_012669.1_4437887_4439255_+	pfam02602, HEM4, Uroporphyrinogen-III synthase HemD	NA|337aa|up_8|NC_012669.1_4439251_4440262_+	PRK09283, PRK09283, porphobilinogen synthase	NA|492aa|up_7|NC_012669.1_4440407_4441883_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|385aa|up_6|NC_012669.1_4442170_4443325_+	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|588aa|up_5|NC_012669.1_4443317_4445081_-	pfam13320, DUF4091, Domain of unknown function (DUF4091)	NA|778aa|up_4|NC_012669.1_4445297_4447631_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|358aa|up_3|NC_012669.1_4447630_4448704_-	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|71aa|up_2|NC_012669.1_4448700_4448913_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|94aa|up_1|NC_012669.1_4449081_4449363_+	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor	NA|133aa|up_0|NC_012669.1_4449458_4449857_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|308aa|down_0|NC_012669.1_4450164_4451088_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|267aa|down_1|NC_012669.1_4451546_4452347_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|321aa|down_2|NC_012669.1_4452343_4453306_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|101aa|down_3|NC_012669.1_4453302_4453605_-	pfam13601, HTH_34, Winged helix DNA-binding domain	NA|221aa|down_4|NC_012669.1_4453601_4454264_-	NA	NA|281aa|down_5|NC_012669.1_4454441_4455284_+	pfam02517, Abi, CAAX protease self-immunity	NA|329aa|down_6|NC_012669.1_4455290_4456277_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|302aa|down_7|NC_012669.1_4456447_4457353_+	pfam02517, Abi, CAAX protease self-immunity	NA|197aa|down_8|NC_012669.1_4457365_4457956_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|917aa|down_9|NC_012669.1_4458108_4460859_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	10	4451362-4451466	9	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	AGACCCGGCGTCACCGCCACCGTG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA|221aa|down_3|NC_012669.1_4453601_4454264_-	NA|337aa|up_9|NC_012669.1_4439251_4440262_+	PRK09283, PRK09283, porphobilinogen synthase	NA|492aa|up_8|NC_012669.1_4440407_4441883_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|385aa|up_7|NC_012669.1_4442170_4443325_+	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|588aa|up_6|NC_012669.1_4443317_4445081_-	pfam13320, DUF4091, Domain of unknown function (DUF4091)	NA|778aa|up_5|NC_012669.1_4445297_4447631_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|358aa|up_4|NC_012669.1_4447630_4448704_-	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|71aa|up_3|NC_012669.1_4448700_4448913_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|94aa|up_2|NC_012669.1_4449081_4449363_+	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor	NA|133aa|up_1|NC_012669.1_4449458_4449857_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|308aa|up_0|NC_012669.1_4450164_4451088_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|267aa|down_0|NC_012669.1_4451546_4452347_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|321aa|down_1|NC_012669.1_4452343_4453306_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|101aa|down_2|NC_012669.1_4453302_4453605_-	pfam13601, HTH_34, Winged helix DNA-binding domain	NA|221aa|down_3|NC_012669.1_4453601_4454264_-	NA	NA|281aa|down_4|NC_012669.1_4454441_4455284_+	pfam02517, Abi, CAAX protease self-immunity	NA|329aa|down_5|NC_012669.1_4455290_4456277_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|302aa|down_6|NC_012669.1_4456447_4457353_+	pfam02517, Abi, CAAX protease self-immunity	NA|197aa|down_7|NC_012669.1_4457365_4457956_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|917aa|down_8|NC_012669.1_4458108_4460859_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|405aa|down_9|NC_012669.1_4460962_4462177_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	11	4631392-4631568	10	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GACCTCGCCGCCGGCGATCGTCAC	24	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA,NA|384aa|down_5|NC_012669.1_4640379_4641531_+,NA|704aa|down_9|NC_012669.1_4645321_4647433_+	NA|318aa|up_9|NC_012669.1_4617454_4618408_+	TIGR04382, myo-inositol_catabolism_protein, 5-dehydro-2-deoxygluconokinase	NA|249aa|up_8|NC_012669.1_4618514_4619261_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|426aa|up_7|NC_012669.1_4619336_4620614_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|298aa|up_6|NC_012669.1_4620617_4621511_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|263aa|up_5|NC_012669.1_4621507_4622296_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|723aa|up_4|NC_012669.1_4622583_4624752_-	cd04794, euk_LANCL, Eukaryotic Lanthionine synthetase C-like protein	NA|337aa|up_3|NC_012669.1_4624759_4625770_-	cd01081, Aldose_epim, aldose 1-epimerase superfamily	NA|293aa|up_2|NC_012669.1_4625795_4626674_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|327aa|up_1|NC_012669.1_4626684_4627665_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|457aa|up_0|NC_012669.1_4627678_4629049_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|210aa|down_0|NC_012669.1_4633264_4633894_+	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|358aa|down_1|NC_012669.1_4633890_4634964_+	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type	NA|965aa|down_2|NC_012669.1_4635053_4637948_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|413aa|down_3|NC_012669.1_4638449_4639688_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|122aa|down_4|NC_012669.1_4639790_4640156_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|384aa|down_5|NC_012669.1_4640379_4641531_+	NA	NA|438aa|down_6|NC_012669.1_4641788_4643102_-	pfam06441, EHN, Epoxide hydrolase N-terminus	NA|484aa|down_7|NC_012669.1_4643174_4644626_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|175aa|down_8|NC_012669.1_4644758_4645283_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|704aa|down_9|NC_012669.1_4645321_4647433_+	NA
GCF_000023105.1_ASM2310v1	NC_012669	Beutenbergia cavernae DSM 12333, complete sequence	12	4641576-4641701	11	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh,DinG	Orphan	GACCAACCACACGGTCGATCCGCGGGCACCCAGACCCCACCCCC	44	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,DinG	NA|384aa|up_0|NC_012669.1_4640379_4641531_+,NA|704aa|down_3|NC_012669.1_4645321_4647433_+,NA|169aa|down_9|NC_012669.1_4656869_4657376_-	NA|293aa|up_9|NC_012669.1_4625795_4626674_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|327aa|up_8|NC_012669.1_4626684_4627665_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|457aa|up_7|NC_012669.1_4627678_4629049_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|1279aa|up_6|NC_012669.1_4629162_4632999_-	cd08980, GH43_LbAraf43-like, Glycosyl hydrolase family 43 proteins such as Lactobacillus brevis alpha-L-arabinofuranosidase LbAraf43 and Geobacillus thermoleovorans GbtXyl43B	NA|210aa|up_5|NC_012669.1_4633264_4633894_+	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|358aa|up_4|NC_012669.1_4633890_4634964_+	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type	NA|965aa|up_3|NC_012669.1_4635053_4637948_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|413aa|up_2|NC_012669.1_4638449_4639688_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|122aa|up_1|NC_012669.1_4639790_4640156_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|384aa|up_0|NC_012669.1_4640379_4641531_+	NA	NA|438aa|down_0|NC_012669.1_4641788_4643102_-	pfam06441, EHN, Epoxide hydrolase N-terminus	NA|484aa|down_1|NC_012669.1_4643174_4644626_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|175aa|down_2|NC_012669.1_4644758_4645283_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|704aa|down_3|NC_012669.1_4645321_4647433_+	NA	NA|195aa|down_4|NC_012669.1_4652374_4652959_-	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb	NA|345aa|down_5|NC_012669.1_4653066_4654101_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|110aa|down_6|NC_012669.1_4654135_4654465_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|410aa|down_7|NC_012669.1_4654699_4655929_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|314aa|down_8|NC_012669.1_4655925_4656867_+	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed	NA|169aa|down_9|NC_012669.1_4656869_4657376_-	NA
