The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012691	Tolumonas auensis DSM 9187, complete sequence	3471292	787327	824358	3471292	integrase,head,protease,transposase	Shigella_phage(26.09%)	51	784649:784663	828509:828523
784649:784663	attL	GCAGAAACACAAGAT	NA	NA	NA	NA
WP_083757722.1|787327_788116_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	35.4	6.5e-37
WP_012728932.1|788150_788495_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012728933.1|788569_789601_-	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
WP_012728934.1|789829_790180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012728935.1|790179_791037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148210411.1|791274_791667_+|integrase	phage integrase N-terminal SAM-like domain-containing protein	integrase	NA	NA	NA	NA
WP_171804894.1|791641_791929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148210470.1|791855_792044_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012728937.1|792198_792600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012728938.1|792771_793602_-	DMT family transporter	NA	NA	NA	NA	NA
WP_012728939.1|793863_794634_-	transcriptional regulator	NA	A0A1C6ZDG7	Pseudomonas_phage	41.4	6.1e-40
WP_012728940.1|794822_795047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728941.1|795043_797269_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A0M4U788	Ralstonia_phage	33.5	5.9e-35
WP_012728942.1|797305_798031_+	ATP-binding protein	NA	M4SPU5	Rhodobacter_phage	27.3	7.1e-22
WP_012728943.1|798061_798661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728944.1|798641_799205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728945.1|799201_799432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728946.1|799431_799659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728947.1|799672_800290_+	DUF3164 family protein	NA	A0A2I7S9B0	Vibrio_phage	62.0	4.3e-68
WP_012728948.1|800292_800475_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012728949.1|800489_800765_+	HU family DNA-binding protein	NA	A0A1P8CWT5	Bacillus_phage	47.2	1.5e-12
WP_041609459.1|800816_801248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728951.1|801244_801778_+	hypothetical protein	NA	J9Q748	Salmonella_phage	40.6	1.3e-25
WP_012728952.1|801774_802461_+	DUF2786 domain-containing protein	NA	L7P7W8	Pseudomonas_phage	38.7	1.8e-30
WP_012728953.1|802457_802637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728954.1|802773_802983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041609460.1|802969_803554_+	regulatory protein GemA	NA	A0A0C4UQU3	Shigella_phage	37.3	6.7e-23
WP_012728956.1|803649_804072_+	transcriptional regulator	NA	A0A0C4UQZ9	Shigella_phage	48.5	4.1e-30
WP_012728957.1|804178_804658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728958.1|804741_805287_+	hypothetical protein	NA	A0A2I7S9B9	Vibrio_phage	39.9	5.0e-20
WP_012728959.1|805288_805531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049759206.1|805538_805799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728961.1|805798_806029_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA	NA
WP_012728962.1|806012_806315_+	DUF2730 family protein	NA	NA	NA	NA	NA
WP_041609669.1|806314_806602_+	hypothetical protein	NA	A0A0C4UR00	Shigella_phage	64.9	9.9e-28
WP_148210413.1|806647_807271_+	DUF3486 family protein	NA	A0A0C4UQU5	Shigella_phage	67.9	3.0e-61
WP_012728965.1|807270_808803_+	hypothetical protein	NA	A0A2I7S9C5	Vibrio_phage	60.6	8.4e-166
WP_012728966.1|808802_810368_+	DUF935 domain-containing protein	NA	J9SVY0	Pseudomonas_phage	48.4	3.4e-130
WP_012728967.1|810367_811834_+	hypothetical protein	NA	A0A2H4IYU7	uncultured_Caudovirales_phage	52.5	3.9e-67
WP_012728968.1|811833_812028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728969.1|812027_812462_+	phage virion morphogenesis protein	NA	A0A2H4J9E5	uncultured_Caudovirales_phage	33.5	3.8e-15
WP_012728970.1|812687_813836_+|protease	phage protease	protease	C9DGP0	Escherichia_phage	47.6	3.4e-79
WP_012728971.1|813835_814744_+|head	Mu-like prophage major head subunit gpT family protein	head	A0A0C4UQR9	Shigella_phage	59.2	1.4e-104
WP_012728972.1|814784_815090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728973.1|815089_815509_+	DUF1320 family protein	NA	B7SDP4	Haemophilus_phage	42.3	3.2e-19
WP_012728974.1|815505_815934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728975.1|815930_816683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728976.1|816817_820255_+	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	36.9	1.5e-45
WP_148210414.1|820337_820712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012728978.1|820708_822208_+	hypothetical protein	NA	A0A0M4U447	Ralstonia_phage	43.0	6.2e-105
WP_012728979.1|822219_824358_+	hypothetical protein	NA	A0A0M4U447	Ralstonia_phage	39.1	2.1e-138
828509:828523	attR	GCAGAAACACAAGAT	NA	NA	NA	NA
>prophage 2
NC_012691	Tolumonas auensis DSM 9187, complete sequence	3471292	992460	999979	3471292		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_012729135.1|992460_993870_-	LysM peptidoglycan-binding domain-containing protein	NA	I1VXB7	Halocynthia_phage	32.7	1.6e-06
WP_012729136.1|993953_994724_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_012729137.1|994810_995566_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012729138.1|995562_996027_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	55.3	9.4e-44
WP_012729139.1|996076_996826_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	38.6	8.6e-39
WP_012729140.1|996868_997447_+	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	30.1	1.8e-12
WP_012729141.1|997465_998263_+	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_012729142.1|998279_998942_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	40.1	3.5e-28
WP_012729143.1|998941_999979_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	47.4	3.6e-75
>prophage 3
NC_012691	Tolumonas auensis DSM 9187, complete sequence	3471292	2200698	2207528	3471292		Powai_lake_megavirus(16.67%)	8	NA	NA
WP_015879079.1|2200698_2201130_-	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	41.7	7.9e-21
WP_015879080.1|2201318_2202614_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	33.0	1.9e-33
WP_015879081.1|2202700_2203039_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_015879082.1|2203038_2204889_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	40.5	3.7e-107
WP_015879083.1|2204937_2205453_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_015879084.1|2205559_2205883_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.0	9.8e-24
WP_015879085.1|2205908_2206295_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.8	2.9e-54
WP_015879086.1|2206313_2207528_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	32.2	8.2e-31
>prophage 4
NC_012691	Tolumonas auensis DSM 9187, complete sequence	3471292	2989089	3003860	3471292	tRNA	Pseudomonas_phage(20.0%)	12	NA	NA
WP_015879768.1|2989089_2990166_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	26.4	3.5e-25
WP_015879769.1|2990175_2991570_-	replicative DNA helicase	NA	A0A1B0VG30	Salmonella_phage	70.2	3.9e-178
WP_015879770.1|2992323_2992518_-	carbon storage regulator CsrA	NA	J7I430	Pseudomonas_phage	68.6	6.7e-12
WP_015879771.1|2992719_2995344_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.0	3.8e-81
WP_015879772.1|2995498_2995954_-	regulatory protein RecX	NA	NA	NA	NA	NA
WP_015879773.1|2996003_2997086_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	64.4	8.7e-117
WP_041609547.1|2997159_2997675_-	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	52.9	1.7e-33
WP_083757798.1|2997724_3000274_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	22.0	1.4e-27
WP_015879776.1|3000329_3001304_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	32.4	1.1e-33
WP_015879777.1|3001352_3002489_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA	NA
WP_041609923.1|3002485_3003100_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.4	3.5e-38
WP_015879779.1|3003113_3003860_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.4	5.7e-67
