assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022965.1_ASM2296v1	NC_012815	Bifidobacterium animalis subsp. lactis DSM 10140, complete genome	1	183464-183849	1	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	GGTCGGTTTTGCGGATGCTTCCG	23	0	0	NA	NA	NA	7	7	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|246aa|up_7|NC_012815.1_173860_174598_+,NA|244aa|up_4|NC_012815.1_176885_177617_-,NA|146aa|down_4|NC_012815.1_189541_189979_-	NA|366aa|up_9|NC_012815.1_170427_171525_-	pfam17996, CE2_N, Carbohydrate esterase 2 N-terminal	NA|461aa|up_8|NC_012815.1_172048_173431_+	TIGR03356, BGL, beta-galactosidase	NA|246aa|up_7|NC_012815.1_173860_174598_+	NA	NA|343aa|up_6|NC_012815.1_174854_175883_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|212aa|up_5|NC_012815.1_176166_176802_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|244aa|up_4|NC_012815.1_176885_177617_-	NA	NA|422aa|up_3|NC_012815.1_178390_179656_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|247aa|up_2|NC_012815.1_180183_180924_+	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional	NA|289aa|up_1|NC_012815.1_180925_181792_+	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|499aa|up_0|NC_012815.1_181944_183441_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|234aa|down_0|NC_012815.1_184022_184724_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|985aa|down_1|NC_012815.1_184734_187689_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|515aa|down_2|NC_012815.1_187743_189288_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|82aa|down_3|NC_012815.1_189299_189545_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|146aa|down_4|NC_012815.1_189541_189979_-	NA	NA|574aa|down_5|NC_012815.1_189896_191618_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|141aa|down_6|NC_012815.1_191614_192037_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|191aa|down_7|NC_012815.1_191855_192428_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|198aa|down_8|NC_012815.1_192731_193325_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|640aa|down_9|NC_012815.1_193396_195316_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_000022965.1_ASM2296v1	NC_012815	Bifidobacterium animalis subsp. lactis DSM 10140, complete genome	2	219241-219324	2	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTTCCGTCTCTTTTTACGCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|256aa|up_2|NC_012815.1_215572_216340_+,NA|237aa|up_1|NC_012815.1_216519_217230_-,NA	NA|733aa|up_9|NC_012815.1_204551_206750_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|923aa|up_8|NC_012815.1_206746_209515_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|214aa|up_7|NC_012815.1_209808_210450_+	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|247aa|up_6|NC_012815.1_210446_211187_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|496aa|up_5|NC_012815.1_211239_212727_+	cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system	NA|528aa|up_4|NC_012815.1_212776_214360_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|294aa|up_3|NC_012815.1_214555_215437_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|256aa|up_2|NC_012815.1_215572_216340_+	NA	NA|237aa|up_1|NC_012815.1_216519_217230_-	NA	NA|523aa|up_0|NC_012815.1_217560_219129_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|467aa|down_0|NC_012815.1_220154_221555_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|432aa|down_1|NC_012815.1_221814_223110_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|down_2|NC_012815.1_223111_223450_+	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|609aa|down_3|NC_012815.1_223760_225587_+	PRK03381, PRK03381, PII uridylyl-transferase; Provisional	NA|91aa|down_4|NC_012815.1_225947_226220_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|460aa|down_5|NC_012815.1_226278_227658_+	TIGR00665, DnaB, replicative DNA helicase	NA|503aa|down_6|NC_012815.1_227754_229263_+	pfam08353, DUF1727, Domain of unknown function (DUF1727)	NA|250aa|down_7|NC_012815.1_229331_230081_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|116aa|down_8|NC_012815.1_230188_230536_+	COG3937, COG3937, Uncharacterized conserved protein [Function unknown]	NA|717aa|down_9|NC_012815.1_230644_232795_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]
GCF_000022965.1_ASM2296v1	NC_012815	Bifidobacterium animalis subsp. lactis DSM 10140, complete genome	3	1319398-1319583	1	PILER-CR	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTGCGTAAAAAGAGACAGA	19	0	0	NA	NA	NA	2	2	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|84aa|up_8|NC_012815.1_1307788_1308040_+,NA|225aa|up_0|NC_012815.1_1318720_1319395_+,NA|84aa|down_7|NC_012815.1_1330794_1331046_+	NA|214aa|up_9|NC_012815.1_1306974_1307616_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|84aa|up_8|NC_012815.1_1307788_1308040_+	NA	NA|900aa|up_7|NC_012815.1_1308123_1310823_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|857aa|up_6|NC_012815.1_1310890_1313461_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|196aa|up_5|NC_012815.1_1313509_1314097_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|437aa|up_4|NC_012815.1_1314432_1315743_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|257aa|up_3|NC_012815.1_1315856_1316627_-	pfam11361, DUF3159, Protein of unknown function (DUF3159)	NA|286aa|up_2|NC_012815.1_1316695_1317553_-	pfam12502, DUF3710, Protein of unknown function (DUF3710)	NA|287aa|up_1|NC_012815.1_1317686_1318547_-	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|225aa|up_0|NC_012815.1_1318720_1319395_+	NA	NA|681aa|down_0|NC_012815.1_1319654_1321697_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|319aa|down_1|NC_012815.1_1321714_1322671_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|down_2|NC_012815.1_1322684_1323611_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|547aa|down_3|NC_012815.1_1323910_1325551_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|312aa|down_4|NC_012815.1_1325827_1326763_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|269aa|down_5|NC_012815.1_1327001_1327808_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|945aa|down_6|NC_012815.1_1327815_1330650_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|84aa|down_7|NC_012815.1_1330794_1331046_+	NA	NA|365aa|down_8|NC_012815.1_1331061_1332156_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|372aa|down_9|NC_012815.1_1332164_1333280_-	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold
GCF_000022965.1_ASM2296v1	NC_012815	Bifidobacterium animalis subsp. lactis DSM 10140, complete genome	4	1511547-1512951	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csb3,cas3,csb2gr5,cas7,cas2,cas1	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Unclear	CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT,CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT,CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT	36,36,36	0	0	NA	NA	NA:NA:NA	19,19,19	19	Unclear	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|107aa|up_2|NC_012815.1_1509294_1509615_+,NA|230aa|down_4|NC_012815.1_1520673_1521363_+	NA|171aa|up_9|NC_012815.1_1499796_1500309_+	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|72aa|up_8|NC_012815.1_1501312_1501528_+	pfam18495, VbhA, Antitoxin VbhA	NA|103aa|up_7|NC_012815.1_1501854_1502163_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csb3|349aa|up_6|NC_012815.1_1502221_1503268_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|1018aa|up_5|NC_012815.1_1503271_1506325_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|546aa|up_4|NC_012815.1_1506315_1507953_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|399aa|up_3|NC_012815.1_1507971_1509168_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|107aa|up_2|NC_012815.1_1509294_1509615_+	NA	cas2|98aa|up_1|NC_012815.1_1509581_1509875_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|544aa|up_0|NC_012815.1_1509886_1511518_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|424aa|down_0|NC_012815.1_1513130_1514402_-	TIGR01436, Glutamate--cysteine_ligase_chloroplastic, glutamate--cysteine ligase, plant type	NA|1573aa|down_1|NC_012815.1_1514475_1519194_-	COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown]	NA|206aa|down_2|NC_012815.1_1519395_1520013_+	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|134aa|down_3|NC_012815.1_1520009_1520411_+	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|230aa|down_4|NC_012815.1_1520673_1521363_+	NA	NA|244aa|down_5|NC_012815.1_1521359_1522091_-	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|809aa|down_6|NC_012815.1_1522450_1524877_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|433aa|down_7|NC_012815.1_1525233_1526532_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|106aa|down_8|NC_012815.1_1526575_1526893_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|342aa|down_9|NC_012815.1_1526893_1527919_-	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family
GCF_000022965.1_ASM2296v1	NC_012815	Bifidobacterium animalis subsp. lactis DSM 10140, complete genome	5	1911620-1911710	4	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTGGCGTCCATGTCACGCGCGGAATCGAT	29	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|71aa|up_3|NC_012815.1_1907041_1907254_-,NA|750aa|down_9|NC_012815.1_1923999_1926249_+	NA|170aa|up_9|NC_012815.1_1897886_1898396_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|691aa|up_8|NC_012815.1_1898545_1900618_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|313aa|up_7|NC_012815.1_1900688_1901627_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|520aa|up_6|NC_012815.1_1901669_1903229_-	NF012221, MARTX_Nterm, MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA|194aa|up_5|NC_012815.1_1903278_1903860_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|997aa|up_4|NC_012815.1_1904069_1907060_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|71aa|up_3|NC_012815.1_1907041_1907254_-	NA	NA|332aa|up_2|NC_012815.1_1907374_1908370_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|483aa|up_1|NC_012815.1_1908518_1909967_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|378aa|up_0|NC_012815.1_1910174_1911308_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|341aa|down_0|NC_012815.1_1911731_1912754_+	pfam07885, Ion_trans_2, Ion channel	NA|706aa|down_1|NC_012815.1_1912823_1914941_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|346aa|down_2|NC_012815.1_1915320_1916358_+	PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional	NA|516aa|down_3|NC_012815.1_1917025_1918573_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|298aa|down_4|NC_012815.1_1918714_1919608_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|319aa|down_5|NC_012815.1_1919604_1920561_+	COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	NA|209aa|down_6|NC_012815.1_1920632_1921259_+	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator	NA|473aa|down_7|NC_012815.1_1921388_1922807_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|335aa|down_8|NC_012815.1_1922992_1923997_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|750aa|down_9|NC_012815.1_1923999_1926249_+	NA
